LIVIVO - The Search Portal for Life Sciences

zur deutschen Oberfläche wechseln
Advanced search

Search results

Result 1 - 7 of total 7

Search options

  1. Article ; Online: 3D reconstruction of the cerebellar germinal layer reveals tunneling connections between developing granule cells.

    Cordero Cervantes, Diégo / Khare, Harshavardhan / Wilson, Alyssa Michelle / Mendoza, Nathaly Dongo / Coulon-Mahdi, Orfane / Lichtman, Jeff William / Zurzolo, Chiara

    Science advances

    2023  Volume 9, Issue 14, Page(s) eadf3471

    Abstract: The difficulty of retrieving high-resolution, in vivo evidence of the proliferative and migratory processes occurring in neural germinal zones has limited our understanding of neurodevelopmental mechanisms. Here, we used a connectomic approach using a ... ...

    Abstract The difficulty of retrieving high-resolution, in vivo evidence of the proliferative and migratory processes occurring in neural germinal zones has limited our understanding of neurodevelopmental mechanisms. Here, we used a connectomic approach using a high-resolution, serial-sectioning scanning electron microscopy volume to investigate the laminar cytoarchitecture of the transient external granular layer (EGL) of the developing cerebellum, where granule cells coordinate a series of mitotic and migratory events. By integrating image segmentation, three-dimensional reconstruction, and deep-learning approaches, we found and characterized anatomically complex intercellular connections bridging pairs of cerebellar granule cells throughout the EGL. Connected cells were either mitotic, migratory, or transitioning between these two cell stages, displaying a chronological continuum of proliferative and migratory events never previously observed in vivo at this resolution. This unprecedented ultrastructural characterization poses intriguing hypotheses about intercellular connectivity between developing progenitors and its possible role in the development of the central nervous system.
    MeSH term(s) Imaging, Three-Dimensional ; Cerebellum ; Neurons/physiology ; Microscopy, Electron, Scanning
    Language English
    Publishing date 2023-04-05
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2810933-8
    ISSN 2375-2548 ; 2375-2548
    ISSN (online) 2375-2548
    ISSN 2375-2548
    DOI 10.1126/sciadv.adf3471
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  2. Article: Serial-section electron microscopy using automated tape-collecting ultramicrotome (ATUM).

    Baena, Valentina / Schalek, Richard Lee / Lichtman, Jeff William / Terasaki, Mark

    Methods in cell biology

    2019  Volume 152, Page(s) 41–67

    Abstract: The Automated Tape-Collecting Ultramicrotome (ATUM) is a tape-reeling device that is placed in a water-filled diamond knife boat to collect serial sections as they are cut by a conventional ultramicrotome. The ATUM can collect thousands of sections of ... ...

    Abstract The Automated Tape-Collecting Ultramicrotome (ATUM) is a tape-reeling device that is placed in a water-filled diamond knife boat to collect serial sections as they are cut by a conventional ultramicrotome. The ATUM can collect thousands of sections of many different shapes and sizes, which are subsequently imaged by a scanning electron microscope. This method has been used for large-scale connectomics projects of mouse brain, and is well suited for other smaller-scale studies of tissues, cells, and organisms. Here, we describe basic procedures for preparing a block for ATUM sectioning, handling of the ATUM, tape preparation, post-treatment of sections, and considerations for mapping, imaging, and aligning the serial sections.
    MeSH term(s) Animals ; Brain/physiology ; Image Processing, Computer-Assisted/methods ; Imaging, Three-Dimensional/methods ; Mice ; Microscopy, Electron, Scanning/methods ; Microtomy/methods
    Language English
    Publishing date 2019-06-08
    Publishing country United States
    Document type Journal Article
    ISSN 0091-679X
    ISSN 0091-679X
    DOI 10.1016/bs.mcb.2019.04.004
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  3. Article ; Online: Connectomics of the

    Bidel, Flavie / Meirovitch, Yaron / Schalek, Richard Lee / Lu, Xiaotang / Pavarino, Elisa Catherine / Yang, Fuming / Peleg, Adi / Wu, Yuelong / Shomrat, Tal / Berger, Daniel Raimund / Shaked, Adi / Lichtman, Jeff William / Hochner, Binyamin

    eLife

    2023  Volume 12

    Abstract: Here, we present the first analysis of the connectome of a small volume of ... ...

    Abstract Here, we present the first analysis of the connectome of a small volume of the
    MeSH term(s) Animals ; Octopodiformes/physiology ; Connectome ; Memory/physiology ; Neurons/physiology ; Brain/physiology
    Language English
    Publishing date 2023-07-06
    Publishing country England
    Document type Journal Article
    ZDB-ID 2687154-3
    ISSN 2050-084X ; 2050-084X
    ISSN (online) 2050-084X
    ISSN 2050-084X
    DOI 10.7554/eLife.84257
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  4. Article ; Online: The Fuzzy Logic of Network Connectivity in Mouse Visual Thalamus.

    Morgan, Josh Lyskowski / Berger, Daniel Raimund / Wetzel, Arthur Willis / Lichtman, Jeff William

    Cell

    2016  Volume 165, Issue 1, Page(s) 192–206

    Abstract: In an attempt to chart parallel sensory streams passing through the visual thalamus, we acquired a 100-trillion-voxel electron microscopy (EM) dataset and identified cohorts of retinal ganglion cell axons (RGCs) that innervated each of a diverse group of ...

    Abstract In an attempt to chart parallel sensory streams passing through the visual thalamus, we acquired a 100-trillion-voxel electron microscopy (EM) dataset and identified cohorts of retinal ganglion cell axons (RGCs) that innervated each of a diverse group of postsynaptic thalamocortical neurons (TCs). Tracing branches of these axons revealed the set of TCs innervated by each RGC cohort. Instead of finding separate sensory pathways, we found a single large network that could not be easily subdivided because individual RGCs innervated different kinds of TCs and different kinds of RGCs co-innervated individual TCs. We did find conspicuous network subdivisions organized on the basis of dendritic rather than neuronal properties. This work argues that, in the thalamus, neural circuits are not based on a canonical set of connections between intrinsically different neuronal types but, rather, may arise by experience-based mixing of different kinds of inputs onto individual postsynaptic cells.
    MeSH term(s) Animals ; Axons/metabolism ; Fuzzy Logic ; Geniculate Bodies/physiology ; Geniculate Bodies/ultrastructure ; Mice ; Mice, Inbred C57BL ; Nerve Net/physiology ; Nerve Net/ultrastructure ; Neural Pathways/physiology ; Neural Pathways/ultrastructure ; Retinal Ganglion Cells/metabolism ; Synapses ; Visual Cortex/cytology
    Language English
    Publishing date 2016-03-24
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 187009-9
    ISSN 1097-4172 ; 0092-8674
    ISSN (online) 1097-4172
    ISSN 0092-8674
    DOI 10.1016/j.cell.2016.02.033
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  5. Article ; Online: Developmental Rewiring between Cerebellar Climbing Fibers and Purkinje Cells Begins with Positive Feedback Synapse Addition.

    Wilson, Alyssa Michelle / Schalek, Richard / Suissa-Peleg, Adi / Jones, Thouis R / Knowles-Barley, Seymour / Pfister, Hanspeter / Lichtman, Jeff William

    Cell reports

    2019  Volume 29, Issue 9, Page(s) 2849–2861.e6

    Abstract: During postnatal development, cerebellar climbing fibers alter their innervation strengths onto supernumerary Purkinje cell targets, generating a one-to-few connectivity pattern in adulthood. To get insight about the processes responsible for this ... ...

    Abstract During postnatal development, cerebellar climbing fibers alter their innervation strengths onto supernumerary Purkinje cell targets, generating a one-to-few connectivity pattern in adulthood. To get insight about the processes responsible for this remapping, we reconstructed serial electron microscopy datasets from mice during the first postnatal week. Between days 3 and 7, individual climbing fibers selectively add many synapses onto a subset of Purkinje targets in a positive-feedback manner, without pruning synapses from other targets. Active zone sizes of synapses associated with powerful versus weak inputs are indistinguishable. Changes in synapse number are thus the predominant form of early developmental plasticity. Finally, the numbers of climbing fibers and Purkinje cells in a local region nearly match. Initial over-innervation of Purkinje cells by climbing fibers is therefore economical: the number of axons entering a region is enough to assure that each ultimately retains a postsynaptic target and that none branched there in vain.
    MeSH term(s) Animals ; Cerebellum/physiopathology ; Humans ; Mice ; Nerve Fibers/metabolism ; Synapses/metabolism
    Language English
    Publishing date 2019-11-27
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 2649101-1
    ISSN 2211-1247 ; 2211-1247
    ISSN (online) 2211-1247
    ISSN 2211-1247
    DOI 10.1016/j.celrep.2019.10.081
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  6. Article ; Online: Whole-brain serial-section electron microscopy in larval zebrafish.

    Hildebrand, David Grant Colburn / Cicconet, Marcelo / Torres, Russel Miguel / Choi, Woohyuk / Quan, Tran Minh / Moon, Jungmin / Wetzel, Arthur Willis / Scott Champion, Andrew / Graham, Brett Jesse / Randlett, Owen / Plummer, George Scott / Portugues, Ruben / Bianco, Isaac Henry / Saalfeld, Stephan / Baden, Alexander David / Lillaney, Kunal / Burns, Randal / Vogelstein, Joshua Tzvi / Schier, Alexander Franz /
    Lee, Wei-Chung Allen / Jeong, Won-Ki / Lichtman, Jeff William / Engert, Florian

    Nature

    2017  Volume 545, Issue 7654, Page(s) 345–349

    Abstract: High-resolution serial-section electron microscopy (ssEM) makes it possible to investigate the dense meshwork of axons, dendrites, and synapses that form neuronal circuits. However, the imaging scale required to comprehensively reconstruct these ... ...

    Abstract High-resolution serial-section electron microscopy (ssEM) makes it possible to investigate the dense meshwork of axons, dendrites, and synapses that form neuronal circuits. However, the imaging scale required to comprehensively reconstruct these structures is more than ten orders of magnitude smaller than the spatial extents occupied by networks of interconnected neurons, some of which span nearly the entire brain. Difficulties in generating and handling data for large volumes at nanoscale resolution have thus restricted vertebrate studies to fragments of circuits. These efforts were recently transformed by advances in computing, sample handling, and imaging techniques, but high-resolution examination of entire brains remains a challenge. Here, we present ssEM data for the complete brain of a larval zebrafish (Danio rerio) at 5.5 days post-fertilization. Our approach utilizes multiple rounds of targeted imaging at different scales to reduce acquisition time and data management requirements. The resulting dataset can be analysed to reconstruct neuronal processes, permitting us to survey all myelinated axons (the projectome). These reconstructions enable precise investigations of neuronal morphology, which reveal remarkable bilateral symmetry in myelinated reticulospinal and lateral line afferent axons. We further set the stage for whole-brain structure-function comparisons by co-registering functional reference atlases and in vivo two-photon fluorescence microscopy data from the same specimen. All obtained images and reconstructions are provided as an open-access resource.
    MeSH term(s) Anatomy, Artistic ; Animals ; Atlases as Topic ; Axons/metabolism ; Axons/ultrastructure ; Brain/anatomy & histology ; Brain/cytology ; Brain/ultrastructure ; Datasets as Topic ; Larva/anatomy & histology ; Larva/cytology ; Larva/ultrastructure ; Microscopy, Electron ; Microscopy, Fluorescence, Multiphoton ; Open Access Publishing ; Zebrafish/anatomy & histology ; Zebrafish/growth & development
    Language English
    Publishing date 2017-05-10
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 120714-3
    ISSN 1476-4687 ; 0028-0836
    ISSN (online) 1476-4687
    ISSN 0028-0836
    DOI 10.1038/nature22356
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  7. Article ; Online: Saturated Reconstruction of a Volume of Neocortex.

    Kasthuri, Narayanan / Hayworth, Kenneth Jeffrey / Berger, Daniel Raimund / Schalek, Richard Lee / Conchello, José Angel / Knowles-Barley, Seymour / Lee, Dongil / Vázquez-Reina, Amelio / Kaynig, Verena / Jones, Thouis Raymond / Roberts, Mike / Morgan, Josh Lyskowski / Tapia, Juan Carlos / Seung, H Sebastian / Roncal, William Gray / Vogelstein, Joshua Tzvi / Burns, Randal / Sussman, Daniel Lewis / Priebe, Carey Eldin /
    Pfister, Hanspeter / Lichtman, Jeff William

    Cell

    2015  Volume 162, Issue 3, Page(s) 648–661

    Abstract: We describe automated technologies to probe the structure of neural tissue at nanometer resolution and use them to generate a saturated reconstruction of a sub-volume of mouse neocortex in which all cellular objects (axons, dendrites, and glia) and many ... ...

    Abstract We describe automated technologies to probe the structure of neural tissue at nanometer resolution and use them to generate a saturated reconstruction of a sub-volume of mouse neocortex in which all cellular objects (axons, dendrites, and glia) and many sub-cellular components (synapses, synaptic vesicles, spines, spine apparati, postsynaptic densities, and mitochondria) are rendered and itemized in a database. We explore these data to study physical properties of brain tissue. For example, by tracing the trajectories of all excitatory axons and noting their juxtapositions, both synaptic and non-synaptic, with every dendritic spine we refute the idea that physical proximity is sufficient to predict synaptic connectivity (the so-called Peters' rule). This online minable database provides general access to the intrinsic complexity of the neocortex and enables further data-driven inquiries.
    MeSH term(s) Animals ; Automation ; Axons/ultrastructure ; Dendrites/ultrastructure ; Mice ; Microscopy, Electron, Scanning/methods ; Microtomy/methods ; Neocortex/cytology ; Neocortex/ultrastructure ; Neurons/ultrastructure ; Synapses/ultrastructure ; Synaptic Vesicles/ultrastructure
    Language English
    Publishing date 2015-07-03
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 187009-9
    ISSN 1097-4172 ; 0092-8674
    ISSN (online) 1097-4172
    ISSN 0092-8674
    DOI 10.1016/j.cell.2015.06.054
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

To top