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Article ; Online: Fecal microbiome in dogs with lymphoid and nonlymphoid tumors

Bae, Hyeona / Lim, Seul Ki / Jo, Hee Eun / Oh, Yeonsu / Park, Jinho / Choi, Hak‐Jong / Yu, DoHyeon

Journal of Veterinary Internal Medicine. 2023 Mar., v. 37, no. 2 p.648-659

2023

Abstract: BACKGROUND: The association of gut microbiota with cancer etiology and prognosis has been demonstrated in humans and rodents but has not been studied in dogs with different types of tumors. HYPOTHESIS/OBJECTIVES: To analyze microbiome composition ... ...

Abstract	BACKGROUND: The association of gut microbiota with cancer etiology and prognosis has been demonstrated in humans and rodents but has not been studied in dogs with different types of tumors. HYPOTHESIS/OBJECTIVES: To analyze microbiome composition according to tumor progression based on metastasis, recurrence, and therapeutic response in canine tumors. ANIMALS: Thirty‐two client‐owned dogs were divided into 3 groups: healthy (n = 9), with lymphoma (n = 12), with nonlymphoid tumors (n = 11). METHODS: Retrospective case series included animals were divided into subgroups according to the nature and severity of their tumors. Feces were screened for the 16S rRNA gene. RESULTS: Overall, alpha diversity was significantly reduced in dogs with tumors (n = 23; 12 lymphoid and 11 nonlymphoid) compared to healthy dogs (n = 9). Bacteroides had lower abundance in canine tumors at genus level. Staphylococcus showed significantly reduced abundance in dogs with aggressive tumor progression. Higher white blood cell (WBC) and neutrophil counts and lower hematocrit were significant in dogs with aggressive tumor. Spearman's rank correlation coefficient analysis revealed several measurements that showed moderate to strong correlations, including Coprococcus with total WBC count, neutrophil count, and hematocrit in the aggressive tumor group, and Saccharimonas with serum albumin and sodium concentration in all tumor dogs. CONCLUSION AND CLINICAL IMPORTANCE: The diversity of the gut microbiome was significantly reduced in dogs with tumors compared to healthy dogs. Correlations were found between changes in blood measurements and changes in microbiome composition in relation to paraneoplastic syndrome.
Keywords	Bacteroides ; Coprococcus ; Staphylococcus ; dogs ; feces ; genes ; hematocrit ; intestinal microorganisms ; leukocyte count ; lymphoma ; metastasis ; microbiome ; neoplasm progression ; neutrophils ; prognosis ; serum albumin ; sodium ; species diversity ; therapeutics ; veterinary medicine
Language	English
Dates of publication	2023-03
Size	p. 648-659.
Publishing place	John Wiley & Sons, Inc.
Document type	Article ; Online
Note	JOURNAL ARTICLE
ZDB-ID	92798-3
ISSN	1939-1676 ; 0891-6640
ISSN (online)	1939-1676
ISSN	0891-6640
DOI	10.1111/jvim.16657
Database	NAL-Catalogue (AGRICOLA)

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Article ; Online: Monitoring mRNA Expression Patterns in Macrophages in Response to Two Different Strains of Probiotics.

Choi, Sang-Pil / Park, Si-Won / Kang, Seok-Jin / Lim, Seul Ki / Kwon, Min-Sung / Choi, Hak-Jong / Chun, Taehoon

Food science of animal resources

2023 Volume 43, Issue 4, Page(s) 703–711

Abstract: As an initial study to elucidate the molecular mechanism of how probiotics modulate macrophage activity, we monitored mRNA expression patterns in peritoneal macrophages (PMs) treated with two different strains of probiotics. After treatment with ... ...

Abstract	As an initial study to elucidate the molecular mechanism of how probiotics modulate macrophage activity, we monitored mRNA expression patterns in peritoneal macrophages (PMs) treated with two different strains of probiotics. After treatment with either
Language	English
Publishing date	2023-07-01
Publishing country	Korea (South)
Document type	Journal Article
ZDB-ID	3016289-0
ISSN	2636-0780 ; 2636-0772
ISSN (online)	2636-0780
ISSN	2636-0772
DOI	10.5851/kosfa.2023.e23
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Article ; Online: Fecal microbiome in dogs with lymphoid and nonlymphoid tumors.

Bae, Hyeona / Lim, Seul Ki / Jo, Hee Eun / Oh, Yeonsu / Park, Jinho / Choi, Hak-Jong / Yu, DoHyeon

Journal of veterinary internal medicine

2023 Volume 37, Issue 2, Page(s) 648–659

Abstract: Background: The association of gut microbiota with cancer etiology and prognosis has been demonstrated in humans and rodents but has not been studied in dogs with different types of tumors.: Hypothesis/objectives: To analyze microbiome composition ... ...

Abstract	Background: The association of gut microbiota with cancer etiology and prognosis has been demonstrated in humans and rodents but has not been studied in dogs with different types of tumors. Hypothesis/objectives: To analyze microbiome composition according to tumor progression based on metastasis, recurrence, and therapeutic response in canine tumors. Animals: Thirty-two client-owned dogs were divided into 3 groups: healthy (n = 9), with lymphoma (n = 12), with nonlymphoid tumors (n = 11). Methods: Retrospective case series included animals were divided into subgroups according to the nature and severity of their tumors. Feces were screened for the 16S rRNA gene. Results: Overall, alpha diversity was significantly reduced in dogs with tumors (n = 23; 12 lymphoid and 11 nonlymphoid) compared to healthy dogs (n = 9). Bacteroides had lower abundance in canine tumors at genus level. Staphylococcus showed significantly reduced abundance in dogs with aggressive tumor progression. Higher white blood cell (WBC) and neutrophil counts and lower hematocrit were significant in dogs with aggressive tumor. Spearman's rank correlation coefficient analysis revealed several measurements that showed moderate to strong correlations, including Coprococcus with total WBC count, neutrophil count, and hematocrit in the aggressive tumor group, and Saccharimonas with serum albumin and sodium concentration in all tumor dogs. Conclusion and clinical importance: The diversity of the gut microbiome was significantly reduced in dogs with tumors compared to healthy dogs. Correlations were found between changes in blood measurements and changes in microbiome composition in relation to paraneoplastic syndrome.
MeSH term(s)	Humans ; Dogs ; Animals ; RNA, Ribosomal, 16S/genetics ; RNA, Ribosomal, 16S/analysis ; Retrospective Studies ; Microbiota ; Lymphoma/veterinary ; Feces/chemistry ; Dog Diseases
Chemical Substances	RNA, Ribosomal, 16S
Language	English
Publishing date	2023-02-28
Publishing country	United States
Document type	Journal Article
ZDB-ID	92798-3
ISSN	1939-1676 ; 0891-6640
ISSN (online)	1939-1676
ISSN	0891-6640
DOI	10.1111/jvim.16657
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Article ; Online: Salicibibacter cibarius sp. nov. and Salicibibacter cibi sp. nov., two novel species of the family Bacillaceae isolated from kimchi.

Oh, Young Joon / Kim, Joon Yong / Lim, Seul Ki / Kwon, Min-Sung / Choi, Hak-Jong

Journal of microbiology (Seoul, Korea)

2021 Volume 59, Issue 5, Page(s) 460–466

Abstract: To date, all species in the genus Salicibibacter have been isolated in Korean commercial kimchi. We aimed to describe the taxonomic characteristics of two strains, NKC5- ... ...

Abstract	To date, all species in the genus Salicibibacter have been isolated in Korean commercial kimchi. We aimed to describe the taxonomic characteristics of two strains, NKC5-3
MeSH term(s)	Bacillaceae/classification ; Bacillaceae/genetics ; Bacillaceae/isolation & purification ; Bacillaceae/physiology ; Bacterial Typing Techniques ; Base Composition ; DNA, Bacterial/genetics ; DNA, Ribosomal/genetics ; Fatty Acids/analysis ; Fermented Foods/microbiology ; Genomics ; Hydrogen-Ion Concentration ; Phospholipids/analysis ; Phylogeny ; RNA, Ribosomal, 16S/genetics ; Republic of Korea ; Sodium Chloride ; Species Specificity
Chemical Substances	DNA, Bacterial ; DNA, Ribosomal ; Fatty Acids ; Phospholipids ; RNA, Ribosomal, 16S ; Sodium Chloride (451W47IQ8X)
Language	English
Publishing date	2021-04-28
Publishing country	Korea (South)
Document type	Journal Article
ZDB-ID	2012399-1
ISSN	1976-3794 ; 1225-8873
ISSN (online)	1976-3794
ISSN	1225-8873
DOI	10.1007/s12275-021-0513-1
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Article: Salicibibacter cibarius sp. nov. and Salicibibacter cibi sp. nov., two novel species of the family Bacillaceae isolated from kimchi

Oh, Young Joon / Kim, Joon Yong / Lim, Seul Ki / Kwon, Min-Sung / Choi, Hak-Jong

journal of microbiology. 2021 May, v. 59, no. 5

2021

Abstract: To date, all species in the genus Salicibibacter have been isolated in Korean commercial kimchi. We aimed to describe the taxonomic characteristics of two strains, NKC5-3ᵀ and NKC21-4ᵀ, isolated from commercial kimchi collected from various regions in ... ...

Abstract	To date, all species in the genus Salicibibacter have been isolated in Korean commercial kimchi. We aimed to describe the taxonomic characteristics of two strains, NKC5-3ᵀ and NKC21-4ᵀ, isolated from commercial kimchi collected from various regions in the Republic of Korea. Cells of these strains were rod-shaped, Gram-positive, aerobic, oxidase- and catalase-positive, non-motile, halophilic, and alkalitolerant. Both strains, unlike other species of the genus Salicibibacter, could not grow without NaCl. Strains NKC5-3ᵀ and NKC21-4ᵀ could tolerate up to 25.0% (w/v) NaCl (optimum 10%) and grow at pH 7.0–10.0 (optimum 8.5) and 8.0–9.0 (optimum 8.5), respectively; they showed 97.1% 16S rRNA gene sequence similarity to each other and were most closely related to S. kimchii NKC1-1ᵀ (97.0% and 96.8% similarity, respectively). The genome of strain NKC5-3ᵀ was nearly 4.6 Mb in size, with 4,456 protein-coding sequences (CDSs), whereas NKC21-4ᵀ genome was nearly 3.9 Mb in size, with 3,717 CDSs. OrthoANI values between the novel strains and S. kimchii NKC1-1ᵀ were far lower than the species demarcation threshold. NKC5-3ᵀ and NKC21-4ᵀ clustered together to form branches that were distinct from the other Salicibibacter species. The major fatty acids in these strains were anteiso-C₁₅:₀ and anteiso-C₁₇:₀, and the predominant menaquinone was menaquinone-7. The polar lipids of NKC5-3ᵀ included diphosphatidylglycerol (DPG), phosphatidylglycerol (PG), and five unidentified phospholipids (PL), and those of NKC21-4ᵀ included DPG, PG, seven unidentified PLs, and an unidentified lipid. Both isolates had DPG, which is the first case in the genus Salicibibacter. The genomic G + C content of strains NKC5-3ᵀ and NKC21-4ᵀ was 44.7 and 44.9 mol%, respectively. Based on phenotypic, genomic, phylogenetic, and chemotaxonomic analyses, strains NKC5-3ᵀ (= KACC 22040ᵀ = DSM 111417ᵀ) and NKC21-4ᵀ (= KACC 22041ᵀ = DSM 111418ᵀ) represent two novel species of the genus Salicibibacter, for which the names Salicibibacter cibarius sp. nov. and Salicibibacter cibi sp. nov. are proposed.
Keywords	Bacillaceae ; chemotaxonomy ; genome ; genomics ; kimchi ; menaquinones ; microbiology ; nucleotide sequences ; pH ; phenotype ; phospholipids ; phylogeny ; sequence homology ; South Korea
Language	English
Dates of publication	2021-05
Size	p. 460-466.
Publishing place	The Microbiological Society of Korea
Document type	Article
Note	NAL-AP-2-clean
ZDB-ID	2012399-1
ISSN	1225-8873
ISSN	1225-8873
DOI	10.1007/s12275-021-0513-1
Database	NAL-Catalogue (AGRICOLA)

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Article ; Online: Lactic Acid Bacteria Strains Used as Starters for Kimchi Fermentation Protect the Disruption of Tight Junctions in the Caco-2 Cell Monolayer Model.

Kang, Jin Yong / Lee, Moeun / Song, Jung Hee / Choi, Eun Ji / Kim, Da Un / Lim, Seul Ki / Kim, Namhee / Chang, Ji Yoon

Journal of microbiology and biotechnology

2022 Volume 32, Issue 12, Page(s) 1583–1588

Abstract: In this study, we investigated the effect of lactic acid bacteria (LAB) strains used as starters for kimchi fermentation, ... ...

Abstract	In this study, we investigated the effect of lactic acid bacteria (LAB) strains used as starters for kimchi fermentation, namely
MeSH term(s)	Humans ; Lactobacillales ; Fermentation ; Tight Junctions ; Caco-2 Cells ; Hydrogen Peroxide/pharmacology ; Lipopolysaccharides ; Fermented Foods/microbiology
Chemical Substances	Hydrogen Peroxide (BBX060AN9V) ; Lipopolysaccharides
Language	English
Publishing date	2022-11-17
Publishing country	Korea (South)
Document type	Journal Article
ZDB-ID	2412195-2
ISSN	1738-8872 ; 1738-8872
ISSN (online)	1738-8872
ISSN	1738-8872
DOI	10.4014/jmb.2209.09026
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Article: Complete genome sequence of probiotic

Oh, Young Joon / Lee, Jieun / Lim, Seul Ki / Kwon, Min-Sung / Lee, Sulhee / Choi, Sang-Pil / Yu, Dohyeon / Oh, Yeon-Su / Park, Jinho / Choi, Hak-Jong

Journal of animal science and technology

2023 Volume 65, Issue 4, Page(s) 890–893

Abstract: Lactobacillus ... ...

Abstract	Lactobacillus johnsonii
Language	English
Publishing date	2023-07-30
Publishing country	Korea (South)
Document type	Journal Article
ZDB-ID	2775231-8
ISSN	2055-0391
ISSN	2055-0391
DOI	10.5187/jast.2022.e98
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Article: Complete genome sequence of

Oh, Young Joon / Kim, Joon Yong / Lee, Jieun / Lim, Seul Ki / Yu, Dohyeon / Oh, Yeon-Su / Park, Jinho / Choi, Hak-Jong

Journal of animal science and technology

2021 Volume 63, Issue 5, Page(s) 1207–1210

Abstract: Lactobacillus ... ...

Abstract	Lactobacillus amylovorus
Language	English
Publishing date	2021-09-30
Publishing country	Korea (South)
Document type	Journal Article
ZDB-ID	2775231-8
ISSN	2055-0391
ISSN	2055-0391
DOI	10.5187/jast.2021.e100
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Article ; Online: The high glucose-induced stimulation of B1R and B2R expression via CB(1)R activation is involved in rat podocyte apoptosis.

Lim, Seul Ki / Park, Soo Hyun

Life sciences

2012 Volume 91, Issue 19-20, Page(s) 895–906

Abstract: Aims: We examined renal kallikrein-kinin system (KKS) apoptosis and its related signaling pathway in rat podocytes. In addition, we studied the relationship of cannabinoid receptor 1 (CB(1)R) with high glucose and BK receptors.: Main methods: Cell ... ...

Abstract	Aims: We examined renal kallikrein-kinin system (KKS) apoptosis and its related signaling pathway in rat podocytes. In addition, we studied the relationship of cannabinoid receptor 1 (CB(1)R) with high glucose and BK receptors. Main methods: Cell viability was determined by an MTT assay and apoptosis by DNA fragmentation assay, while gene expression was investigated by RT-PCR. Protein expression was analyzed by Western blot analysis. A chemical inhibitor or siRNA transfection was used to inhibit B1R, B2R, and CB(1)R signaling. Key findings: High glucose (25 mM) treatment decreased cell viability and increased DNA fragmentation. High glucose-induced DNA fragmentation and PARP and caspase-3 activations were blocked by both [des-Arg(10)]-HOE 140 (a B1R antagonist) and HOE 140 (a B2R antagonist). High glucose also increased Akt phosphorylation, ER stress-related protein expression, and NF-κB/I-κB phosphorylation in podocytes, which was blocked by both [des-Arg(10)]-HOE 140 and HOE 140. In addition, B1R and B2R siRNA transfections prevented high glucose-induced Akt and NF-κB activations in rat podocytes. Moreover, AM251 (a CB(1)R antagonist) treatment and CB(1)R siRNA transfection blocked the high glucose-induced stimulation of BK receptor expression, Akt activation, and NF-κB activation. Significance: Our study suggests that hyperglycemia induces apoptosis via the stimulation of B1R and B2R expression through CB(1)R activation in rat podocytes in vitro, which is associated with the development of diabetic nephropathy.
MeSH term(s)	Animals ; Apoptosis ; Bradykinin/analogs & derivatives ; Bradykinin/pharmacology ; Cell Survival ; DNA Fragmentation ; Endoplasmic Reticulum Stress ; Gene Expression Regulation ; Glucose/administration & dosage ; Hyperglycemia/physiopathology ; Kallikrein-Kinin System ; Piperidines/pharmacology ; Podocytes/metabolism ; Pyrazoles/pharmacology ; Rats ; Receptor, Bradykinin B1/genetics ; Receptor, Bradykinin B2/genetics ; Receptor, Cannabinoid, CB1/metabolism ; Reverse Transcriptase Polymerase Chain Reaction ; Tetrahydroisoquinolines/pharmacology
Chemical Substances	Piperidines ; Pyrazoles ; Receptor, Bradykinin B1 ; Receptor, Bradykinin B2 ; Receptor, Cannabinoid, CB1 ; Tetrahydroisoquinolines ; HOE 140, desArg(10)- (138680-92-9) ; AM 251 (3I4FA44MAI) ; icatibant (7PG89G35Q7) ; Glucose (IY9XDZ35W2) ; Bradykinin (S8TIM42R2W)
Language	English
Publishing date	2012-11-02
Publishing country	Netherlands
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	3378-9
ISSN	1879-0631 ; 0024-3205
ISSN (online)	1879-0631
ISSN	0024-3205
DOI	10.1016/j.lfs.2012.07.020
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Article ; Online: Kimchi intake alleviates obesity-induced neuroinflammation by modulating the gut-brain axis

Kim, Namhee / Lee, Jieun / Song, Hye Seon / Oh, Young Joon / Kwon, Min-Sung / Yun, Misun / Lim, Seul Ki / Park, Hyo Kyeong / Jang, Young Seo / Lee, Sulhee / Choi, Sang-Pil / Roh, Seong Woon / Choi, Hak-Jong

Food Research International. 2022 Aug., v. 158 p.111533-

2022

Abstract: A high-fat diet (HFD) induces low-grade, chronic inflammation throughout the body including the hypothalamus, a key brain region involved in the control of satiety and energy expenditure in central nervous system (CNS). Kimchi is a traditional fermented ... ...

Abstract	A high-fat diet (HFD) induces low-grade, chronic inflammation throughout the body including the hypothalamus, a key brain region involved in the control of satiety and energy expenditure in central nervous system (CNS). Kimchi is a traditional fermented Korean food, which is recognized as a healthy food. In this study, we evaluated its ability to suppress the obesity-induced inflammation in mice fed an HFD. Male C57BL/6 mice were fed an HFD or HFD with kimchi (pH 5.2 ∼ 5.8). Oral administration of kimchi significantly reduced the body weight, fat mass gain, and levels of pro-inflammatory cytokines in serum. Furthermore, kimchi diminished the HFD-induced activation of astrocyte and microglial cells (reactive gliosis, a hallmark of CNS injury and inflammation) in hypothalamus region. IgG accumulation assay showed that kimchi ingestion suppressed HFD-induced breakage of the blood brain barrier (BBB) via upregulating the expression of tight junction molecules in cerebrovascular endothelial cells. In addition, kimchi modulated gut microbiome profiles, which showed an increase in the abundance of Akkermansia muciniphila. Moreover, kimchi enhanced acetate level and BBB integrity in A. muciniphila-colonized gnotobiotic mice. These results suggest that kimchi may exert beneficial effects to prevent and ameliorate obesity and associated neuroinflammation by changing gut microbiota composition and short-chain fatty acids production.
Keywords	acetates ; astrocytes ; blood serum ; blood-brain barrier ; cytokines ; energy expenditure ; fermentation ; food research ; germ-free animals ; healthy diet ; high fat diet ; hypothalamus ; inflammation ; ingestion ; intestinal microorganisms ; kimchi ; males ; obesity ; oral administration ; pH ; satiety ; tight junctions ; Neuroinflammation ; Microbiota ; Akkermansia muciniphila ; HFD ; DIO ; FFA ; MCP-1 ; TNF-α ; CNS ; SCFAs ; BBB ; GFAP ; Iba1 ; POMC ; CC-3 ; ARC ; PVN ; GF ; SPF
Language	English
Dates of publication	2022-08
Publishing place	Elsevier Ltd
Document type	Article ; Online
ZDB-ID	1111695-x
ISSN	1873-7145 ; 0963-9969
ISSN (online)	1873-7145
ISSN	0963-9969
DOI	10.1016/j.foodres.2022.111533
Database	NAL-Catalogue (AGRICOLA)

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