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  1. Article ; Online: Absence of long-term balancing selection on variation in EuMYB3, an R2R3-MYB gene responsible for the anther-color polymorphism in Erythronium umbilicatum.

    Lin, Rong-Chien / Rausher, Mark D

    Scientific reports

    2024  Volume 14, Issue 1, Page(s) 5364

    Abstract: Balancing selection has been shown to be common in plants for several different types of traits, such as self-incompatibility and heterostyly. Generally, for these traits balancing selection is generated by interactions among individuals or between ... ...

    Abstract Balancing selection has been shown to be common in plants for several different types of traits, such as self-incompatibility and heterostyly. Generally, for these traits balancing selection is generated by interactions among individuals or between individuals and other species (e.g., pathogens or pollinators). However, there are phenotypic polymorphisms in plants that do not obviously involve types of interactions that generate balancing selection. Little is known about the extent to which balancing selection also acts to preserve these polymorphisms. Here we ask whether balancing selection preserves an anther-color polymorphism in Erythronium umbilicatum (Liliaceae). We identified a major gene underlying this polymorphism. We then attempted to detect signatures of balancing selection on that gene by developing a new coalescence test for balancing selection. We found that variation in anther color is in large part caused by variation in a paralog of EuMYB3, an anthocyanin-regulating R2R3-MYB transcription factor. However, we found little evidence for balancing selection having acted historically on EuMYB3. Our results thus suggest that plant polymorphisms, especially those not involved in interactions that are likely to generate negative frequency-dependent selection, may reflect a transient state in which one morph will eventually be fixed by either genetic drift or directional selection. Our results also suggest that regulation of the anthocyanin pathway is more evolutionarily labile than is generally believed.
    MeSH term(s) Humans ; Genes, myb ; Anthocyanins/genetics ; Polymorphism, Genetic ; Genetic Drift ; Liliaceae
    Chemical Substances Anthocyanins
    Language English
    Publishing date 2024-03-04
    Publishing country England
    Document type Journal Article
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-024-56117-y
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Single-nucleotide polymorphism rs2910829 in

    Zhang, Guiying / Tang, Xuelei / Li, Qifu / Lin, Rong

    Open life sciences

    2024  Volume 19, Issue 1, Page(s) 20220818

    Abstract: Stroke is a debilitating condition that often leads to disability and death. The increasing prevalence of stroke has drawn worldwide attention. Extensive evidence indicates a crucial role of genetic determinants in the occurrence and perpetuation of ... ...

    Abstract Stroke is a debilitating condition that often leads to disability and death. The increasing prevalence of stroke has drawn worldwide attention. Extensive evidence indicates a crucial role of genetic determinants in the occurrence and perpetuation of stroke. An Icelandic study identified a significant correlation of the phosphodiesterase 4D (
    Language English
    Publishing date 2024-02-23
    Publishing country Poland
    Document type Journal Article
    ZDB-ID 2817958-4
    ISSN 2391-5412 ; 2391-5412
    ISSN (online) 2391-5412
    ISSN 2391-5412
    DOI 10.1515/biol-2022-0818
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: PDE4D single nucleotide polymorphism rs918592 is associated with ischemic Stroke risk in Chinese populations: a meta-analysis.

    Yu, Xinrui / Zhang, Guiying / Tang, Xuelei / Lin, Rong

    BMC cardiovascular disorders

    2024  Volume 24, Issue 1, Page(s) 17

    Abstract: Background: Several studies have investigated the correlation between phosphodiesterase 4D (PDE4D) single nucleotide polymorphism (SNP) rs918592 and the risk of ischemic stroke (IS) in Chinese populations. But the results were inconsistent and ... ...

    Abstract Background: Several studies have investigated the correlation between phosphodiesterase 4D (PDE4D) single nucleotide polymorphism (SNP) rs918592 and the risk of ischemic stroke (IS) in Chinese populations. But the results were inconsistent and inconclusive. Therefore, to resolve this conflict, we conducted a meta-analysis to further elucidate their relationship in Chinese populations.
    Methods: Studies focused on SNP rs918592 and IS risk were electronic searched in the databases of PubMed, Embase, ISI Web of Science, Weipu, China National Knowledge Infrastructure (CNKI), Chinese Biomedical (CBM) and Wanfang. The association between SNP rs918592 and IS risk was expressed by odds ratio (OR) with its confidence interval (CI). Begg's and Egger's linear regression tests were used to assess publication bias. The meta-analysis was performed with STATA 11.0 statistical software. Two online prediction websites (HaploReg and RegulomeDB) were adopted to explore the functions of SNP rs918592.
    Results: The meta-analysis ultimately included 10 studies involving 2,348 cases and 2,289 controls. The results showed that there was a significant correlation between SNP rs918592 and IS risk in Chinese individuals. The G allele had reduced risk of developing IS compared to the A allele (OR 0.83, 95% CI 0.74-0.95, P = 0.005). HaploReg and RegulomeDB analyses suggested that SNP rs918592 and its strongly linked SNPs (e.g. rs34168777) might have regulatory functions.
    Conclusion: This study shows that SNP rs918592 in PDE4D may be a contributor of IS risk in Chinese populations. It offers a good answer for the association of PDE4D SNP rs918592 with IS risk in Chinese populations for the first time.
    MeSH term(s) Humans ; Polymorphism, Single Nucleotide ; Brain Ischemia/diagnosis ; Brain Ischemia/epidemiology ; Brain Ischemia/genetics ; Stroke/diagnosis ; Stroke/epidemiology ; Stroke/genetics ; Ischemic Stroke ; Cyclic Nucleotide Phosphodiesterases, Type 4/genetics ; Ischemia ; China/epidemiology ; Genetic Predisposition to Disease
    Chemical Substances Cyclic Nucleotide Phosphodiesterases, Type 4 (EC 3.1.4.17) ; PDE4D protein, human (EC 3.1.4.17)
    Language English
    Publishing date 2024-01-03
    Publishing country England
    Document type Meta-Analysis ; Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2059859-2
    ISSN 1471-2261 ; 1471-2261
    ISSN (online) 1471-2261
    ISSN 1471-2261
    DOI 10.1186/s12872-023-03681-2
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: The molecular basis of phenotypic evolution: beyond the usual suspects.

    Lin, Rong-Chien / Ferreira, Bianca T / Yuan, Yao-Wu

    Trends in genetics : TIG

    2024  

    Abstract: It has been well documented that mutations in coding DNA or cis-regulatory elements underlie natural phenotypic variation in many organisms. However, the development of sophisticated functional tools in recent years in a wide range of traditionally non- ... ...

    Abstract It has been well documented that mutations in coding DNA or cis-regulatory elements underlie natural phenotypic variation in many organisms. However, the development of sophisticated functional tools in recent years in a wide range of traditionally non-model systems have revealed many 'unusual suspects' in the molecular bases of phenotypic evolution, including upstream open reading frames (uORFs), cryptic splice sites, and small RNAs. Furthermore, large-scale genome sequencing, especially long-read sequencing, has identified a cornucopia of structural variation underlying phenotypic divergence and elucidated the composition of supergenes that control complex multi-trait polymorphisms. In this review article we highlight recent studies that demonstrate this great diversity of molecular mechanisms producing adaptive genetic variation and the panoply of evolutionary paths leading to the 'grandeur of life'.
    Language English
    Publishing date 2024-05-03
    Publishing country England
    Document type Journal Article ; Review
    ZDB-ID 619240-3
    ISSN 1362-4555 ; 0168-9525 ; 0168-9479
    ISSN (online) 1362-4555
    ISSN 0168-9525 ; 0168-9479
    DOI 10.1016/j.tig.2024.04.010
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Intraductal Papillomas From the Parotid Gland.

    Mao, Lei / Lin, Rong-Zhi / Fan, Da-Ge

    The Journal of craniofacial surgery

    2024  

    Abstract: Intraductal papillomas have been mostly described in minor salivary glands but are extremely rare in the parotid gland. Consequently, limited information is available to guide otolaryngologists and pathologists in managing intraductal papillomas, ... ...

    Abstract Intraductal papillomas have been mostly described in minor salivary glands but are extremely rare in the parotid gland. Consequently, limited information is available to guide otolaryngologists and pathologists in managing intraductal papillomas, specifically in the parotid gland. Diagnosing intraductal papillomas in this location poses significant challenges. In this report, the authors present a new case and first conduct a systematic literature review of the intraductal papillomas originating from the parotid gland. This study contributes valuable insights that can improve diagnostic accuracy, providing more precise treatments, and patient outcomes in cases of intraductal papillomas in the parotid gland.
    Language English
    Publishing date 2024-05-21
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1159501-2
    ISSN 1536-3732 ; 1049-2275
    ISSN (online) 1536-3732
    ISSN 1049-2275
    DOI 10.1097/SCS.0000000000010330
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article: Sleep deprivation affects sex hormones secretion by regulating the expression of the circadian clock gene in the hypothalamus and pituitary via the PI3K/Akt signaling pathway in pregnant rats.

    Lin, Rong-Jin / Dai, Xiao-Feng

    Sheng li xue bao : [Acta physiologica Sinica

    2022  Volume 74, Issue 4, Page(s) 534–540

    Abstract: Sleep deprivation (SD) has many deleterious health effects and occurs in more than 70% of pregnant women. However, the changes in sex hormones and relevant mechanisms after SD have not been well clarified. The aim of the present study was to explore the ... ...

    Abstract Sleep deprivation (SD) has many deleterious health effects and occurs in more than 70% of pregnant women. However, the changes in sex hormones and relevant mechanisms after SD have not been well clarified. The aim of the present study was to explore the effects of SD on the secretion of sex hormones and the underlying mechanisms. Twelve pregnant Wistar rats were divided into control (CON, n = 6) and SD (n = 6) groups. Pregnant rats in the SD group were deprived of sleep for 18 h, and allowed free rest for 6 h, and then the above procedures were repeated until delivery. The CON group lived in a 12 h light/dark light cycle environment. Estradiol (E2) and progesterone (P4) levels were detected by enzyme-linked immunosorbent assay (ELISA), and the expression of circadian clock genes, Bmal1, Clock and Per2, in hypothalamus and pituitary gland tissues were evaluated by immunohistochemistry (IHC) and reverse transcription-quantitative polymerase chain reaction (RT-qPCR). The PI3K and Akt phosphorylation levels in the hypothalamic and pituitary tissues were determined by Western blot. The results showed that, compared with the CON group, the SD group exhibited significantly reduced serum E2 and P4 levels, down-regulated Bmal1, Clock and Per2 expression, as well as decreased phosphorylation levels of PI3K and Akt. But there was no significant difference of the total PI3K and Akt protein expression levels between the two groups. These results suggest that SD might affect the expression of the circadian clock genes in the hypothalamus and pituitary via PI3K/Akt pathway, and subsequently regulate the secretion of sex hormones in the pregnant rats, which hints the important roles of SD-induced changes of serum sex hormone levels in the pregnant rats.
    MeSH term(s) ARNTL Transcription Factors/genetics ; ARNTL Transcription Factors/metabolism ; Animals ; Circadian Clocks/genetics ; Circadian Clocks/physiology ; Circadian Rhythm/genetics ; Female ; Gene Expression Regulation/genetics ; Gonadal Steroid Hormones/genetics ; Gonadal Steroid Hormones/metabolism ; Hypothalamus/metabolism ; Phosphatidylinositol 3-Kinases/genetics ; Phosphatidylinositol 3-Kinases/metabolism ; Pituitary Gland/metabolism ; Pregnancy ; Progesterone ; Proto-Oncogene Proteins c-akt/genetics ; Proto-Oncogene Proteins c-akt/metabolism ; Rats ; Rats, Wistar ; Signal Transduction ; Sleep Deprivation/genetics ; Sleep Deprivation/metabolism
    Chemical Substances ARNTL Transcription Factors ; Gonadal Steroid Hormones ; Progesterone (4G7DS2Q64Y) ; Proto-Oncogene Proteins c-akt (EC 2.7.11.1)
    Language English
    Publishing date 2022-08-11
    Publishing country China
    Document type Journal Article
    ZDB-ID 604308-2
    ISSN 0371-0874
    ISSN 0371-0874
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  7. Article: Inverse association between age and risk of lymph node metastasis in patients with early gastric cancer: a surveillance, epidemiology, and end results analysis.

    Pang, Suya / Wang, Weijun / Zhou, Jianning / Jiang, Xin / Lin, Rong

    Journal of Cancer

    2024  Volume 15, Issue 9, Page(s) 2829–2836

    Abstract: Background: ...

    Abstract Background:
    Language English
    Publishing date 2024-03-25
    Publishing country Australia
    Document type Journal Article
    ZDB-ID 2573318-7
    ISSN 1837-9664
    ISSN 1837-9664
    DOI 10.7150/jca.94542
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Isolation, Identification and Chemical Modification of Bufadienolides from

    Ye, Qingmei / Lin, Rong / Chen, Zeping / Li, Juan / Zheng, Caijuan

    Molecules (Basel, Switzerland)

    2024  Volume 29, Issue 7

    Abstract: The traditional Chinese medicine toad venom ( ...

    Abstract The traditional Chinese medicine toad venom (
    MeSH term(s) Humans ; Male ; Animals ; Prostatic Neoplasms/drug therapy ; Antineoplastic Agents/pharmacology ; Amphibian Venoms/pharmacology ; Bufanolides/pharmacology ; Bufonidae ; Lactams ; Lactones
    Chemical Substances Antineoplastic Agents ; Amphibian Venoms ; Bufanolides ; Lactams ; Lactones
    Language English
    Publishing date 2024-03-31
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 1413402-0
    ISSN 1420-3049 ; 1431-5165 ; 1420-3049
    ISSN (online) 1420-3049
    ISSN 1431-5165 ; 1420-3049
    DOI 10.3390/molecules29071571
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: The Efficacy and Safety of Regimens for Helicobacter pylori Eradication Treatment in China: A Systemic Review and Network Meta-Analysis.

    Li, Jing / Shi, Huiying / Zhou, Fang / Xie, Li / Lin, Rong

    Journal of clinical gastroenterology

    2024  Volume 58, Issue 1, Page(s) 12–23

    Abstract: Background: With Helicobacter pylori's increasing antibiotic resistance, evidence of more effective treatments is lacking in China, where H. pylori prevalence is nearly 50%. Thus, we performed a network meta-analysis to compare therapeutic regimens.: ... ...

    Abstract Background: With Helicobacter pylori's increasing antibiotic resistance, evidence of more effective treatments is lacking in China, where H. pylori prevalence is nearly 50%. Thus, we performed a network meta-analysis to compare therapeutic regimens.
    Methods: Data extracted from eligible randomized controlled trials from January 2000 to September 2021 were entered into a Bayesian hierarchical random-effects model to evaluate the efficacy and safety of H. pylori eradication regimens.
    Results: This study included 101 trials involving 21,745 patients. Vonoprazan-bismuth-containing quadruple therapy (VBQT) ranked the highest [surfaces under cumulative ranking curve (SUCRA), 83.64%], followed by high-dose amoxicillin dual therapy (HDDT) [SUCRA, 79.70%, odds ratio (OR)=1.31, 95% credible interval (CrI) (0.36, 4.72)] and proton pump inhibitor-based bismuth-containing quadruple therapy (BQT) [SUCRA, 63.59%, OR=1.59, 95% CrI (0.48, 5.24)]. HDDT [OR=2.47, 95% CrI (1.51, 4.06)], BQT [OR=2.04, 95% CrI (1.69, 2.47)], concomitant quadruple nonbismuth therapy (CT) [OR=1.93, 95% CrI (1.19, 3.15)], and sequential therapy (ST) [OR=1.86, 95% CrI (1.50, 2.32)] had higher eradication rates than standard triple therapy (TT). ST (SUCRA, 82.52%) and VBQT (SUCRA, 83.89%) had the highest eradication rate before and after 2010 in the effectiveness ranking, respectively. Furthermore, the H. pylori eradication rate of patients receiving 14-day BQT treatment was higher than that of 10-day BQT regimen [OR=2.55, 95% CI (1.84, 3.53)] and 7-day BQT regimen [OR=3.64, 95% CI (2.64, 5.01)].
    Conclusions: The TT regimen was not an optimal choice in China for H. pylori eradication; VBQT, HDDT, and BQT showed better efficacy. After 2010, there is a trend toward significance that VBQT provided a higher H. pylori eradication rate in China, but with only 1 randomized controlled trial. Thus, more supportive real-world data are needed to confirm its effectiveness.
    MeSH term(s) Humans ; Anti-Bacterial Agents/adverse effects ; Bismuth/adverse effects ; Helicobacter Infections/drug therapy ; Helicobacter pylori ; Network Meta-Analysis ; Bayes Theorem ; Drug Therapy, Combination ; Amoxicillin/adverse effects ; China ; Proton Pump Inhibitors ; Treatment Outcome
    Chemical Substances Anti-Bacterial Agents ; Bismuth (U015TT5I8H) ; Amoxicillin (804826J2HU) ; Proton Pump Inhibitors
    Language English
    Publishing date 2024-01-01
    Publishing country United States
    Document type Meta-Analysis ; Systematic Review ; Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 448460-5
    ISSN 1539-2031 ; 0192-0790
    ISSN (online) 1539-2031
    ISSN 0192-0790
    DOI 10.1097/MCG.0000000000001902
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  10. Article: Recurrent hemichorea with different etiologies in one patient.

    Lin, Rong / Lai, Tzu-Hsien / Chen, Mei-Hsiu

    Oxford medical case reports

    2023  Volume 2023, Issue 2, Page(s) omad006

    Abstract: Hemichorea is a unilateral movement disorder caused by acute ischemic or hemorrhagic stroke of contralateral cerebral lesions. It is followed by hyperglycemia, and other systemic diseases. Several cases of recurrent hemichorea associated with the same ... ...

    Abstract Hemichorea is a unilateral movement disorder caused by acute ischemic or hemorrhagic stroke of contralateral cerebral lesions. It is followed by hyperglycemia, and other systemic diseases. Several cases of recurrent hemichorea associated with the same etiology have been reported, but cases with different etiologies have rarely been reported. We report a case in which the patient experienced both strokes and post-stroke-related hyperglycemic hemichorea. Magnetic resonance imaging of the brain appeared different in these two episodes. Our case demonstrates the importance of evaluating every patient presented with recurrent hemichorea carefully, as the disorder may be caused by different conditions.
    Language English
    Publishing date 2023-02-27
    Publishing country England
    Document type Case Reports
    ZDB-ID 2766251-2
    ISSN 2053-8855
    ISSN 2053-8855
    DOI 10.1093/omcr/omad006
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