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  1. Book ; Online: Goat

    Liu, Tiedong / Low, Bryan Kian Hsiang

    Fine-tuned LLaMA Outperforms GPT-4 on Arithmetic Tasks

    2023  

    Abstract: We introduce Goat, a fine-tuned LLaMA model that significantly outperforms GPT-4 on a range of arithmetic tasks. Fine-tuned on a synthetically generated dataset, Goat achieves state-of-the-art performance on BIG-bench arithmetic sub-task. In particular, ... ...

    Abstract We introduce Goat, a fine-tuned LLaMA model that significantly outperforms GPT-4 on a range of arithmetic tasks. Fine-tuned on a synthetically generated dataset, Goat achieves state-of-the-art performance on BIG-bench arithmetic sub-task. In particular, the zero-shot Goat-7B matches or even surpasses the accuracy achieved by the few-shot PaLM-540B. Surprisingly, Goat can achieve near-perfect accuracy on large-number addition and subtraction through supervised fine-tuning only, which is almost impossible with previous pretrained language models, such as Bloom, OPT, GPT-NeoX, etc. We attribute Goat's exceptional performance to LLaMA's consistent tokenization of numbers. To tackle more challenging tasks like large-number multiplication and division, we propose an approach that classifies tasks based on their learnability, and subsequently decomposes unlearnable tasks, such as multi-digit multiplication and division, into a series of learnable tasks by leveraging basic arithmetic principles. We thoroughly examine the performance of our model, offering a comprehensive evaluation of the effectiveness of our proposed decomposition steps. Additionally, Goat-7B can be easily trained using LoRA on a 24GB VRAM GPU, facilitating reproducibility for other researchers. We release our model, dataset, and the Python script for dataset generation.
    Keywords Computer Science - Machine Learning ; Computer Science - Artificial Intelligence ; Computer Science - Computation and Language
    Subject code 006
    Publishing date 2023-05-23
    Publishing country us
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  2. Article: Transcriptome-based network analysis of cell cycle-related genes in response to blue and red light in maize.

    Liu, Tiedong / Zhang, Xiwen / Liu, Shengqun

    AoB PLANTS

    2023  Volume 15, Issue 6, Page(s) plad079

    Abstract: In maize, blue and red light are key environmental factors regulating cell-cycle progression. We used transcriptomics to investigate and compare differential gene expression under the four light conditions: red light, blue light, red converted to blue ... ...

    Abstract In maize, blue and red light are key environmental factors regulating cell-cycle progression. We used transcriptomics to investigate and compare differential gene expression under the four light conditions: red light, blue light, red converted to blue and blue converted to red. A total of 23 differentially expressed genes were identified. The gene-gene interaction analysis indicated a significant interaction between four unidentified genes,
    Language English
    Publishing date 2023-12-11
    Publishing country England
    Document type Journal Article
    ZDB-ID 2555823-7
    ISSN 2041-2851
    ISSN 2041-2851
    DOI 10.1093/aobpla/plad079
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Transcriptome and Metabolomic Analyses Reveal Regulatory Networks Controlling Maize Stomatal Development in Response to Blue Light.

    Liu, Tiedong / Zhang, Xiwen

    International journal of molecular sciences

    2021  Volume 22, Issue 10

    Abstract: 1) Background: Blue light is important for the formation of maize stomata, but the signal network remains unclear. (2) Methods: We replaced red light with blue light in an experiment and provided a complementary regulatory network for the stomatal ... ...

    Abstract (1) Background: Blue light is important for the formation of maize stomata, but the signal network remains unclear. (2) Methods: We replaced red light with blue light in an experiment and provided a complementary regulatory network for the stomatal development of maize by using transcriptome and metabolomics analysis. (3) Results: Exposure to blue light led to 1296 differentially expressed genes and 419 differential metabolites. Transcriptome comparisons and correlation signaling network analysis detected 55 genes, and identified 6 genes that work in the regulation of the HY5 module and MAPK cascade, that interact with PTI1, COI1, MPK2, and MPK3, in response to the substitution of blue light in environmental adaptation and signaling transduction pathways. Metabolomics analysis showed that two genes involved in carotenoid biosynthesis and starch and sucrose metabolism participate in stomatal development. Their signaling sites located on the PHI1 and MPK2 sites of the MAPK cascade respond to blue light signaling. (4) Conclusions: Blue light remarkably changed the transcriptional signal transduction and metabolism of metabolites, and eight obtained genes worked in the HY5 module and MAPK cascade.
    MeSH term(s) Gene Expression Regulation, Plant/genetics ; Gene Regulatory Networks/genetics ; Light ; Metabolomics/methods ; Signal Transduction/genetics ; Transcription, Genetic/genetics ; Transcriptome/genetics ; Zea mays/genetics
    Language English
    Publishing date 2021-05-20
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2019364-6
    ISSN 1422-0067 ; 1422-0067 ; 1661-6596
    ISSN (online) 1422-0067
    ISSN 1422-0067 ; 1661-6596
    DOI 10.3390/ijms22105393
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Comparative transcriptome and metabolome analysis reveal glutathione metabolic network and functional genes underlying blue and red-light mediation in maize seedling leaf.

    Liu, Tiedong / Zhang, Xiwen

    BMC plant biology

    2021  Volume 21, Issue 1, Page(s) 593

    Abstract: Background: Light quality severely affects biosynthesis and metabolism-associated process of glutathione. However, the role of specific light is still unclear on the glutathione metabolism. In this article, comparatively transcriptome and metabolome ... ...

    Abstract Background: Light quality severely affects biosynthesis and metabolism-associated process of glutathione. However, the role of specific light is still unclear on the glutathione metabolism. In this article, comparatively transcriptome and metabolome methods are used to fully understand the blue and red-light conditions working on the glutathione metabolism in maize seedling leaf.
    Results: There are 20 differently expressed genes and 4 differently expressed metabolites in KEGG pathway of glutathione metabolism. Among them, 12 genes belong to the glutathione S-transferase family, 3 genes belong to the ascorbate peroxidase gene family and 2 genes belong to the ribonucleoside-diphosphate reductase gene family. Three genes, G6PD, SPDS1, and GPX1 belong to the gene family of glucose 6-phosphate dehydrogenase, spermidine synthase, and glutathione peroxidase, respectively. Four differently expressed metabolites are identified. Three of them, Glutathione disulfide, Glutathione, and l-γ-Glutamyl-L-amino acid are decreased while L-Glutamate is increased. In addition, Through PPI analysis, two annotated genes gst16 and DAAT, and 3 unidentified genes 100381533, pco105094 and umc2770, identified as RPP13-like3, BCAT-like1and GMPS, were obtained. By the analysis of protein sequence and PPI network, we predict that pco105094 and umc2770 were involved in the GSSG-GSH and AsA-GSH cycle in the network of glutathione metabolism.
    Conclusions: Compared to red light, blue light remarkably changed the transcription signal transduction and metabolism of glutathione metabolism. Differently expressed genes and metabolic mapped to the glutathione metabolism signaling pathways. In total, we obtained three unidentified genes, and two of them were predicted in current glutathione metabolism network. This result will contribute to the research of glutathione metabolism of maize.
    MeSH term(s) Gene Expression Regulation, Plant ; Genes, Plant ; Glutathione/metabolism ; Light ; Metabolic Networks and Pathways/genetics ; Metabolome ; Plant Leaves/enzymology ; Plant Leaves/metabolism ; Plant Leaves/radiation effects ; Plant Proteins/chemistry ; Plant Proteins/genetics ; Plant Proteins/metabolism ; Protein Conformation ; Seedlings/metabolism ; Seedlings/radiation effects ; Transcriptome ; Zea mays/enzymology ; Zea mays/genetics ; Zea mays/metabolism ; Zea mays/radiation effects
    Chemical Substances Plant Proteins ; Glutathione (GAN16C9B8O)
    Language English
    Publishing date 2021-12-14
    Publishing country England
    Document type Comparative Study ; Journal Article
    ISSN 1471-2229
    ISSN (online) 1471-2229
    DOI 10.1186/s12870-021-03376-w
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Comparative transcriptome and metabolome analysis reveal glutathione metabolic network and functional genes underlying blue and red-light mediation in maize seedling leaf

    Liu, Tiedong / Zhang, Xiwen

    BMC Plant Biol. 2021 Dec., v. 21, no. 1 p.593-593

    2021  

    Abstract: BACKGROUND: Light quality severely affects biosynthesis and metabolism-associated process of glutathione. However, the role of specific light is still unclear on the glutathione metabolism. In this article, comparatively transcriptome and metabolome ... ...

    Abstract BACKGROUND: Light quality severely affects biosynthesis and metabolism-associated process of glutathione. However, the role of specific light is still unclear on the glutathione metabolism. In this article, comparatively transcriptome and metabolome methods are used to fully understand the blue and red-light conditions working on the glutathione metabolism in maize seedling leaf. RESULTS: There are 20 differently expressed genes and 4 differently expressed metabolites in KEGG pathway of glutathione metabolism. Among them, 12 genes belong to the glutathione S-transferase family, 3 genes belong to the ascorbate peroxidase gene family and 2 genes belong to the ribonucleoside-diphosphate reductase gene family. Three genes, G6PD, SPDS1, and GPX1 belong to the gene family of glucose 6-phosphate dehydrogenase, spermidine synthase, and glutathione peroxidase, respectively. Four differently expressed metabolites are identified. Three of them, Glutathione disulfide, Glutathione, and l-γ-Glutamyl-L-amino acid are decreased while L-Glutamate is increased. In addition, Through PPI analysis, two annotated genes gst16 and DAAT, and 3 unidentified genes 100381533, pco105094 and umc2770, identified as RPP13-like3, BCAT-like1and GMPS, were obtained. By the analysis of protein sequence and PPI network, we predict that pco105094 and umc2770 were involved in the GSSG-GSH and AsA-GSH cycle in the network of glutathione metabolism. CONCLUSIONS: Compared to red light, blue light remarkably changed the transcription signal transduction and metabolism of glutathione metabolism. Differently expressed genes and metabolic mapped to the glutathione metabolism signaling pathways. In total, we obtained three unidentified genes, and two of them were predicted in current glutathione metabolism network. This result will contribute to the research of glutathione metabolism of maize.
    Keywords NADP-glucose-6-phosphate dehydrogenase ; amino acid sequences ; ascorbate peroxidase ; biochemical pathways ; biosynthesis ; blue light ; corn ; disulfides ; genes ; glucose 6-phosphate ; glutamic acid ; glutathione ; glutathione peroxidase ; glutathione transferase ; leaves ; light quality ; metabolites ; metabolome ; metabolomics ; red light ; ribonucleotide reductase ; seedlings ; signal transduction ; spermidine synthase ; transcriptome
    Language English
    Dates of publication 2021-12
    Size p. 593.
    Publishing place BioMed Central
    Document type Article ; Online
    ZDB-ID 2059868-3
    ISSN 1471-2229
    ISSN 1471-2229
    DOI 10.1186/s12870-021-03376-w
    Database NAL-Catalogue (AGRICOLA)

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  6. Article ; Online: Inhibition of lithium dendrite growth by high-thermal-stability separator containing sulfonated covalent organic frameworks and polybenzimidazole

    Min, You / Liu, Tiedong / Zhang, Bin / Guo, Li / Wu, Aogui / Xian, Dongxia / Wang, Lei

    Journal of Membrane Science. 2023 July, v. 677 p.121617-

    2023  

    Abstract: Li-ion batteries (LIBs) are considered an excellent energy storage system because of their ultrahigh energy density. However, safety problems caused by the shrinkage of their separators at high temperatures and the growth of lithium dendrites have ... ...

    Abstract Li-ion batteries (LIBs) are considered an excellent energy storage system because of their ultrahigh energy density. However, safety problems caused by the shrinkage of their separators at high temperatures and the growth of lithium dendrites have seriously limited their further development and application. Therefore, it is important to develop a separator with excellent heat resistance that inhibits the growth of lithium dendrites. In this work, bifunctional separators are prepared using poly(aryl ether benzimidazole) (OPBI) and sulfonated covalent organic frameworks (SCOFs). OPBI is used as the matrix material of the separator owing to its outstanding thermal properties, and the microstructure and polar functional groups of the SCOFs regulate the transport of Li⁺ and reduce the growth of lithium dendrites. The obtained SCOF15@OPBI hybrid separators exhibited excellent thermal stability (no change in physical size at 200 °C for 1 h) and stabilized the lithium plating/stripping process on the anode for more than 3200 h with a relatively low voltage hysteresis of roughly 1.6 mV at 0.5 mA cm⁻². The hybrid separator also showed high ionic conductivity (1.76 mS cm⁻¹) and an outstanding electrolyte uptake rate (439%), and a cell containing the hybrid separator exhibited a satisfactory discharge specific capacity (153.2 mA h g⁻¹). The hybrid separator promotes large-scale energy storage applications of LIBs.
    Keywords anodes ; benzimidazole ; electric potential difference ; electrolytes ; energy density ; heat tolerance ; hysteresis ; lithium ; microstructure ; shrinkage ; thermal stability ; Li-ion batteries ; Separators ; Lithium dendrites ; Covalent organic frameworks ; poly(aryl ether benzimidazole)
    Language English
    Dates of publication 2023-07
    Publishing place Elsevier B.V.
    Document type Article ; Online
    ZDB-ID 194516-6
    ISSN 0376-7388
    ISSN 0376-7388
    DOI 10.1016/j.memsci.2023.121617
    Database NAL-Catalogue (AGRICOLA)

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  7. Article: Three new Xylaria species (Xylariaceae, Xylariales) on fallen leaves from Hainan Tropical Rainforest National Park

    Pan, Xiao-Yan / Song, Zi-Kun / Qu, Zhi / Liu, Tie-Dong / Ma, Hai-Xia

    MycoKeys. 2022 Jan. 12, v. 86

    2022  

    Abstract: AbstractThree new species of Xylaria on fallen leaves in Hainan Province of China are described and illustrated, based on morphological and molecular evidence. Xylaria hedyosmicola is found on fallen leaves of Hedyosmum orientale and featured by thread- ... ...

    Abstract AbstractThree new species of Xylaria on fallen leaves in Hainan Province of China are described and illustrated, based on morphological and molecular evidence. Xylaria hedyosmicola is found on fallen leaves of Hedyosmum orientale and featured by thread-like stromata with a long sterile filiform apex. Phylogenetically, X. hedyosmicola is closely related to an undescribed Xylaria sp. from Hawaii Island, USA and morphologically similar to X. vagans. Xylaria lindericola is found on fallen leaves of Lindera robusta and characterised by its subglobose stromata and a long filiform stipe. It is phylogenetically closely related to X.siculaf.major. Xylaria polysporicola is found on fallen leaves of Polyspora hainanensis, it is distinguished by upright or prostrate stromata and ascospores sometimes with a slimy sheath or non-cellular appendages. Xylaria polysporicola is phylogenetically closely related to X. amphithele and X. ficicola. An identification key to the ten species on fallen leaves in China is given.
    Keywords Lindera ; Xylaria ; ascospores ; national parks ; new species ; phylogeny ; taxonomic keys ; tropical rain forests ; China
    Language English
    Dates of publication 2022-0112
    Size p. 47-63.
    Publishing place Pensoft Publishers
    Document type Article
    ZDB-ID 2630648-7
    ISSN 1314-4049
    ISSN 1314-4049
    DOI 10.3897/mycokeys.86.71623
    Database NAL-Catalogue (AGRICOLA)

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  8. Article: Estimating the Soil Erosion Response to Land-Use Land-Cover Change Using GIS-Based RUSLE and Remote Sensing: A Case Study of Miyun Reservoir, North China

    Gong, Wenfeng / Liu, Tiedong / Duan, Xuanyu / Sun, Yuxin / Zhang, Yangyang / Tong, Xinyu / Qiu, Zixuan

    Water. 2022 Feb. 25, v. 14, no. 5

    2022  

    Abstract: Soil erosion by water is a major cause of land degradation. Agricultural practices and many other ecological environmental problems contribute to land degradation worldwide, especially in arid and semi-arid areas. Miyun County, which is located in a ... ...

    Abstract Soil erosion by water is a major cause of land degradation. Agricultural practices and many other ecological environmental problems contribute to land degradation worldwide, especially in arid and semi-arid areas. Miyun County, which is located in a mountainous region of North China, is an important natural ecological zone and surface source of drinking water for Beijing and is very vulnerable to soil erosion due to its thin soil layer and human activities. Landsat images from 2003 and 2013 were used to analyze the land-use and land-cover change (LULCC) over this period. The revised universal soil loss equation (RUSLE) model integrated with Geographic Information System (GIS) was used to quantify soil loss and to map erosion risk. In addition, the response of soil erosion to LULCC was evaluated. The results showed that the areas under cropland, forest, and water bodies increased over the study period by 66.03, 243.44, and 9.01 km², respectively. The increase in forested land indicated that the improved ground vegetation cover was due to the implementation of active ecological measures. Between 2003 and 2013, light soil erosion increased by 587.46 km², and extremely severe soil erosion increased by 9.57 km². The extents of slight, moderate, severe, and very severe soil erosion, however, decreased by 8.02, 445.21, 142.69, and 1.11 km², respectively. A total of 57.5% of land with moderate soil erosion has been converted to light soil erosion, which could be highly beneficial for the improvement of vegetation control of soil and water losses. In terms of area, forestland exhibited the greatest increase, while moderate soil erosion exhibited the greatest decrease over the study period. Land-use change led to an alteration in the intensity of soil erosion due to changes or loss of vegetation. The conversion from high intensity soil erosion to low intensity was attributed to the implementation of ecological environmental protection. The results generated from this study may be useful for planners and land-use managers to make appropriate decisions for soil conservation.
    Keywords Landsat ; Revised Universal Soil Loss Equation ; case studies ; cropland ; environmental protection ; forest land ; forests ; geographic information systems ; ground vegetation ; humans ; land cover ; land degradation ; land use and land cover maps ; land use change ; mountains ; risk ; soil conservation ; soil erosion ; soil texture ; vegetation cover ; China
    Language English
    Dates of publication 2022-0225
    Publishing place Multidisciplinary Digital Publishing Institute
    Document type Article
    ZDB-ID 2521238-2
    ISSN 2073-4441
    ISSN 2073-4441
    DOI 10.3390/w14050742
    Database NAL-Catalogue (AGRICOLA)

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  9. Article ; Online: Three new

    Pan, Xiao-Yan / Song, Zi-Kun / Qu, Zhi / Liu, Tie-Dong / Ma, Hai-Xia

    MycoKeys

    2022  Volume 86, Page(s) 47–63

    Abstract: Three new species ... ...

    Abstract Three new species of
    Language English
    Publishing date 2022-01-12
    Publishing country Bulgaria
    Document type Journal Article
    ZDB-ID 2630648-7
    ISSN 1314-4049 ; 1314-4049
    ISSN (online) 1314-4049
    ISSN 1314-4049
    DOI 10.3897/mycokeys.86.71623
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Remote Sensing of Tropical Rainforest Biomass Changes in Hainan Island, China from 2003 to 2018

    Lin, Meizhi / Ling, Qingping / Pei, Huiqing / Song, Yanni / Qiu, Zixuan / Wang, Cai / Liu, Tiedong / Gong, Wenfeng

    Remote Sensing. 2021 Apr. 27, v. 13, no. 9

    2021  

    Abstract: The largest area of tropical rainforests in China is on Hainan Island, and it is an important part of the world’s tropical rainforests. The structure of the tropical rainforests in Hainan is complex, the biomass density is high, and conducting ground ... ...

    Abstract The largest area of tropical rainforests in China is on Hainan Island, and it is an important part of the world’s tropical rainforests. The structure of the tropical rainforests in Hainan is complex, the biomass density is high, and conducting ground surveys is difficult, costly, and time-consuming. Remote sensing is a good monitoring method for biomass estimation. However, the saturation phenomenon of such data from different satellite sensors results in low forest biomass estimation accuracy in tropical rainforests with high biomass density. Based on environmental information, the biomass of permanent sample plots, and forest age, this study established a tropical rainforest database for Hainan. Forest age and 14 types of environmental information, combined with an enhanced vegetation index (EVI), were introduced to establish a tropical rainforest biomass estimation model for remote sensing that can overcome the saturation phenomenon present when using remote sensing data. The fitting determination coefficient R2 of the model was 0.694. The remote sensing estimate of relative bias was 2.29%, and the relative root mean square error was 35.41%. The tropical rainforest biomass in Hainan Island is mainly distributed in the central mountainous and southern areas. The tropical rainforests in the northern and coastal areas have been severely damaged by tourism and real estate development. Particularly in low-altitude areas, large areas of tropical rainforest have been replaced by economic forests. Furthermore, the tropical rainforest areas in some cities and counties have decreased, affecting the increase in tropical rainforest biomass. On Hainan Island, there were few tropical rainforests in areas with high rainfall. Therefore, afforestation in these areas could maximize the ecological benefits of tropical rainforests. To further strengthen the protection, there is an urgent need to establish a feasible, reliable, and effective tropical rainforest loss assessment system using quantitative scientific methodologies.
    Keywords afforestation ; altitude ; biomass ; databases ; models ; mountains ; rain ; satellites ; tourism ; tropical rain forests ; vegetation index ; China
    Language English
    Dates of publication 2021-0427
    Publishing place Multidisciplinary Digital Publishing Institute
    Document type Article ; Online
    Note NAL-AP-2-clean
    ZDB-ID 2513863-7
    ISSN 2072-4292
    ISSN 2072-4292
    DOI 10.3390/rs13091696
    Database NAL-Catalogue (AGRICOLA)

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