Article: CLIMB-COVID: continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance
Genome biology. 2021 Dec., v. 22, no. 1
2021
Abstract: In response to the ongoing SARS-CoV-2 pandemic in the UK, the COVID-19 Genomics UK (COG-UK) consortium was formed to rapidly sequence SARS-CoV-2 genomes as part of a national-scale genomic surveillance strategy. The network consists of universities, ... ...
Institution | The COVID-19 Genomics UK (COG-UK) Consortium |
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Abstract | In response to the ongoing SARS-CoV-2 pandemic in the UK, the COVID-19 Genomics UK (COG-UK) consortium was formed to rapidly sequence SARS-CoV-2 genomes as part of a national-scale genomic surveillance strategy. The network consists of universities, academic institutes, regional sequencing centres and the four UK Public Health Agencies. We describe the development and deployment of CLIMB-COVID, an encompassing digital infrastructure to address the challenge of collecting and integrating both genomic sequencing data and sample-associated metadata produced across the COG-UK network. |
Keywords | COVID-19 infection ; Severe acute respiratory syndrome coronavirus 2 ; genome ; genomics ; metadata ; monitoring ; pandemic ; public health |
Language | English |
Dates of publication | 2021-12 |
Size | p. 196. |
Publishing place | BioMed Central |
Document type | Article |
Note | Editorial |
ZDB-ID | 2040529-7 |
ISSN | 1474-760X |
ISSN | 1474-760X |
DOI | 10.1186/s13059-021-02395-y |
Database | NAL-Catalogue (AGRICOLA) |
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