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  1. Article: Physical, Chemical, and Biological Properties of Soil under Decaying Wood in a Tropical Wet Forest in Puerto Rico

    Zalamea, Marcela / González, Grizelle / Lodge, Deborah Jean

    Forests. 2016 Aug. 04, v. 7, no. 8

    2016  

    Abstract: Decaying wood is related to nutrient cycling through its role as either a sink or source of nutrients. However, at micro scales, what is the effect of decaying logs on the physical, chemical, and biotic characteristics of the soil underneath? We took ... ...

    Abstract Decaying wood is related to nutrient cycling through its role as either a sink or source of nutrients. However, at micro scales, what is the effect of decaying logs on the physical, chemical, and biotic characteristics of the soil underneath? We took samples from a 0 to 5 cm depth under and a 50 cm distance away from decaying logs (Dacryodes excelsa and Swietenia macrophylla) at 2 stages of decay, and measured soil temperature, total and available nutrients, and root length in a tropical wet forest. We found decaying wood affected physical, chemical, and biotic properties of the underlying soil. Soil temperature was less variable under the decaying logs than away from the logs. Soil under the decaying wood had fewer roots, and lower NO<inf>3</inf>− and Mg2+ availability than samples collected a distance of 50 cm away from the logs. Tree species and decay stage were important factors defining the effect of decaying wood on the distribution of available nutrients. Ca2+, Mg2+, and K+ levels were higher in the soil associated with the youngest logs, and were higher near S. macrophylla logs. Heavy metals were also higher in the soil located near the younger logs independent of the species; other metal ions such as Al3+ and Fe3+ were higher in the soil associated with D. excelsa and the oldest logs. These results indicate decaying wood can contribute to and generate spatial heterogeneity of soil properties.
    Keywords aluminum ; biogeochemical cycles ; calcium ; Dacryodes excelsa ; decayed wood ; forests ; heavy metals ; iron ; magnesium ; metal ions ; nitric oxide ; nutrient availability ; nutrients ; potassium ; roots ; soil biological properties ; soil heterogeneity ; soil temperature ; spatial variation ; Swietenia macrophylla ; trees ; Puerto Rico
    Language English
    Dates of publication 2016-0804
    Publishing place Multidisciplinary Digital Publishing Institute
    Document type Article
    ZDB-ID 2527081-3
    ISSN 1999-4907
    ISSN 1999-4907
    DOI 10.3390/f7080168
    Database NAL-Catalogue (AGRICOLA)

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  2. Article: The first ITS phylogeny of the genus Cantharocybe (Agaricales, Hygrophoraceae) with a new record of C. virosa from Bangladesh

    Hosen, Md. Iqbal / Li, Tai-Hui / Lodge, Deborah Jean / Rockefeller, Alan

    MycoKeys. 2016 Sept. 2, v. 14

    2016  

    Abstract: This is the first internal transcribed spacer (ITS) phylogeny of the enigmatic genus Cantharocybe and includes ITS sequences from two out of the three holotype collections. Two species are reported from the Americas and only a single species from Asia. ... ...

    Abstract This is the first internal transcribed spacer (ITS) phylogeny of the enigmatic genus Cantharocybe and includes ITS sequences from two out of the three holotype collections. Two species are reported from the Americas and only a single species from Asia. Additionally, a collection of Cantharocybe virosa collected from tropical Bangladesh was included in this study. This species is a new record for Bangladesh, and is characterized by its tawny gray or grayish brown pileus and stipe surface, smooth ellipsoid basidiospores, elongated necked lecythiform cystidia, a trichoderm pileipellis, and abundant clamp connections. Molecular phylogenetic analysis using ITS, and combined analyses of ITS with the large subunit of nuclear ribosomal RNA (nrLSU) showed that the collection from Bangladesh is conspecific with the Indian C. virosa. A large, previously unknown intron was found in the ITS of C. brunneovelutina and C. virosa, while the C. gruberi sequence was found to be truncated where the intron would have been inserted. The intron was not identical between Cantharocybe species, and may be phylogenetically informative. Morphological description, color photographs and line drawings are provided for Bangladesh collection C. virosa. A key to the genus Cantharocybe is provided.
    Keywords Hygrophoraceae ; basidiospores ; color ; holotypes ; internal transcribed spacers ; introns ; photographs ; phylogeny ; ribosomal RNA ; taxonomic keys ; Bangladesh
    Language English
    Dates of publication 2016-0902
    Size p. 37-50.
    Publishing place Pensoft Publishers
    Document type Article
    Note NAL-light
    ZDB-ID 2630648-7
    ISSN 1314-4049
    ISSN 1314-4049
    DOI 10.3897/mycokeys.14.9859
    Database NAL-Catalogue (AGRICOLA)

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  3. Article: Considerations and consequences of allowing DNA sequence data as types of fungal taxa.

    Zamora, Juan Carlos / Svensson, Måns / Kirschner, Roland / Olariaga, Ibai / Ryman, Svengunnar / Parra, Luis Alberto / Geml, József / Rosling, Anna / Adamčík, Slavomír / Ahti, Teuvo / Aime, M Catherine / Ainsworth, A Martyn / Albert, László / Albertó, Edgardo / García, Alberto Altés / Ageev, Dmitry / Agerer, Reinhard / Aguirre-Hudson, Begoña / Ammirati, Joe /
    Andersson, Harry / Angelini, Claudio / Antonín, Vladimír / Aoki, Takayuki / Aptroot, André / Argaud, Didier / Sosa, Blanca Imelda Arguello / Aronsen, Arne / Arup, Ulf / Asgari, Bita / Assyov, Boris / Atienza, Violeta / Bandini, Ditte / Baptista-Ferreira, João Luís / Baral, Hans-Otto / Baroni, Tim / Barreto, Robert Weingart / Beker, Henry / Bell, Ann / Bellanger, Jean-Michel / Bellù, Francesco / Bemmann, Martin / Bendiksby, Mika / Bendiksen, Egil / Bendiksen, Katriina / Benedek, Lajos / Bérešová-Guttová, Anna / Berger, Franz / Berndt, Reinhard / Bernicchia, Annarosa / Biketova, Alona Yu / Bizio, Enrico / Bjork, Curtis / Boekhout, Teun / Boertmann, David / Böhning, Tanja / Boittin, Florent / Boluda, Carlos G / Boomsluiter, Menno W / Borovička, Jan / Brandrud, Tor Erik / Braun, Uwe / Brodo, Irwin / Bulyonkova, Tatiana / Burdsall, Harold H / Buyck, Bart / Burgaz, Ana Rosa / Calatayud, Vicent / Callac, Philippe / Campo, Emanuele / Candusso, Massimo / Capoen, Brigitte / Carbó, Joaquim / Carbone, Matteo / Castañeda-Ruiz, Rafael F / Castellano, Michael A / Chen, Jie / Clerc, Philippe / Consiglio, Giovanni / Corriol, Gilles / Courtecuisse, Régis / Crespo, Ana / Cripps, Cathy / Crous, Pedro W / da Silva, Gladstone Alves / da Silva, Meiriele / Dam, Marjo / Dam, Nico / Dämmrich, Frank / Das, Kanad / Davies, Linda / De Crop, Eske / De Kesel, Andre / De Lange, Ruben / De Madrignac Bonzi, Bárbara / Dela Cruz, Thomas Edison E / Delgat, Lynn / Demoulin, Vincent / Desjardin, Dennis E / Diederich, Paul / Dima, Bálint / Dios, Maria Martha / Divakar, Pradeep Kumar / Douanla-Meli, Clovis / Douglas, Brian / Drechsler-Santos, Elisandro Ricardo / Dyer, Paul S / Eberhardt, Ursula / Ertz, Damien / Esteve-Raventós, Fernando / Salazar, Javier Angel Etayo / Evenson, Vera / Eyssartier, Guillaume / Farkas, Edit / Favre, Alain / Fedosova, Anna G / Filippa, Mario / Finy, Péter / Flakus, Adam / Fos, Simón / Fournier, Jacques / Fraiture, André / Franchi, Paolo / Molano, Ana Esperanza Franco / Friebes, Gernot / Frisch, Andreas / Fryday, Alan / Furci, Giuliana / Márquez, Ricardo Galán / Garbelotto, Matteo / García-Martín, Joaquina María / Otálora, Mónica A García / Sánchez, Dania García / Gardiennet, Alain / Garnica, Sigisfredo / Benavent, Isaac Garrido / Gates, Genevieve / da Cruz Lima Gerlach, Alice / Ghobad-Nejhad, Masoomeh / Gibertoni, Tatiana B / Grebenc, Tine / Greilhuber, Irmgard / Grishkan, Bella / Groenewald, Johannes Z / Grube, Martin / Gruhn, Gérald / Gueidan, Cécile / Gulden, Gro / Gusmão, Luis Fp / Hafellner, Josef / Hairaud, Michel / Halama, Marek / Hallenberg, Nils / Halling, Roy E / Hansen, Karen / Harder, Christoffer Bugge / Heilmann-Clausen, Jacob / Helleman, Stip / Henriot, Alain / Hernandez-Restrepo, Margarita / Herve, Raphaël / Hobart, Caroline / Hoffmeister, Mascha / Høiland, Klaus / Holec, Jan / Holien, Håkon / Hughes, Karen / Hubka, Vit / Huhtinen, Seppo / Ivančević, Boris / Jagers, Marian / Jaklitsch, Walter / Jansen, AnnaElise / Jayawardena, Ruvishika S / Jeppesen, Thomas Stjernegaard / Jeppson, Mikael / Johnston, Peter / Jørgensen, Per Magnus / Kärnefelt, Ingvar / Kalinina, Liudmila B / Kantvilas, Gintaras / Karadelev, Mitko / Kasuya, Taiga / Kautmanová, Ivona / Kerrigan, Richard W / Kirchmair, Martin / Kiyashko, Anna / Knapp, Dániel G / Knudsen, Henning / Knudsen, Kerry / Knutsson, Tommy / Kolařík, Miroslav / Kõljalg, Urmas / Košuthová, Alica / Koszka, Attila / Kotiranta, Heikki / Kotkova, Vera / Koukol, Ondřej / Kout, Jiří / Kovács, Gábor M / Kříž, Martin / Kruys, Åsa / Kučera, Viktor / Kudzma, Linas / Kuhar, Francisco / Kukwa, Martin / Arun Kumar, T K / Kunca, Vladimír / Kušan, Ivana / Kuyper, Thomas W / Lado, Carlos / Læssøe, Thomas / Lainé, Patrice / Langer, Ewald / Larsson, Ellen / Larsson, Karl-Henrik / Laursen, Gary / Lechat, Christian / Lee, Serena / Lendemer, James C / Levin, Laura / Lindemann, Uwe / Lindström, Håkan / Liu, Xingzhong / Hernandez, Regulo Carlos Llarena / Llop, Esteve / Locsmándi, Csaba / Lodge, Deborah Jean / Loizides, Michael / Lőkös, László / Luangsa-Ard, Jennifer / Lüderitz, Matthias / Lumbsch, Thorsten / Lutz, Matthias / Mahoney, Dan / Malysheva, Ekaterina / Malysheva, Vera / Manimohan, Patinjareveettil / Marin-Felix, Yasmina / Marques, Guilhermina / Martínez-Gil, Rubén / Marson, Guy / Mata, Gerardo / Matheny, P Brandon / Mathiassen, Geir Harald / Matočec, Neven / Mayrhofer, Helmut / Mehrabi, Mehdi / Melo, Ireneia / Mešić, Armin / Methven, Andrew S / Miettinen, Otto / Romero, Ana M Millanes / Miller, Andrew N / Mitchell, James K / Moberg, Roland / Moreau, Pierre-Arthur / Moreno, Gabriel / Morozova, Olga / Morte, Asunción / Muggia, Lucia / González, Guillermo Muñoz / Myllys, Leena / Nagy, István / Nagy, László G / Neves, Maria Alice / Niemelä, Tuomo / Nimis, Pier Luigi / Niveiro, Nicolas / Noordeloos, Machiel E / Nordin, Anders / Noumeur, Sara Raouia / Novozhilov, Yuri / Nuytinck, Jorinde / Ohenoja, Esteri / Fiuza, Patricia Oliveira / Orange, Alan / Ordynets, Alexander / Ortiz-Santana, Beatriz / Pacheco, Leticia / Pál-Fám, Ferenc / Palacio, Melissa / Palice, Zdeněk / Papp, Viktor / Pärtel, Kadri / Pawlowska, Julia / Paz, Aurelia / Peintner, Ursula / Pennycook, Shaun / Pereira, Olinto Liparini / Daniëls, Pablo Pérez / Pérez-De-Gregorio Capella, Miquel À / Del Amo, Carlos Manuel Pérez / Gorjón, Sergio Pérez / Pérez-Ortega, Sergio / Pérez-Vargas, Israel / Perry, Brian A / Petersen, Jens H / Petersen, Ronald H / Pfister, Donald H / Phukhamsakda, Chayanard / Piątek, Marcin / Piepenbring, Meike / Pino-Bodas, Raquel / Esquivel, Juan Pablo Pinzón / Pirot, Paul / Popov, Eugene S / Popoff, Orlando / Álvaro, María Prieto / Printzen, Christian / Psurtseva, Nadezhda / Purahong, Witoon / Quijada, Luis / Rambold, Gerhard / Ramírez, Natalia A / Raja, Huzefa / Raspé, Olivier / Raymundo, Tania / Réblová, Martina / Rebriev, Yury A / de Dios Reyes García, Juan / Ripoll, Miguel Ángel Ribes / Richard, Franck / Richardson, Mike J / Rico, Víctor J / Robledo, Gerardo Lucio / Barbosa, Flavia Rodrigues / Rodriguez-Caycedo, Cristina / Rodriguez-Flakus, Pamela / Ronikier, Anna / Casas, Luis Rubio / Rusevska, Katerina / Saar, Günter / Saar, Irja / Salcedo, Isabel / Martínez, Sergio M Salcedo / Montoya, Carlos A Salvador / Sánchez-Ramírez, Santiago / Sandoval-Sierra, J Vladimir / Santamaria, Sergi / Monteiro, Josiane Santana / Schroers, Hans Josef / Schulz, Barbara / Schmidt-Stohn, Geert / Schumacher, Trond / Senn-Irlet, Beatrice / Ševčíková, Hana / Shchepin, Oleg / Shirouzu, Takashi / Shiryaev, Anton / Siepe, Klaus / Sir, Esteban B / Sohrabi, Mohammad / Soop, Karl / Spirin, Viacheslav / Spribille, Toby / Stadler, Marc / Stalpers, Joost / Stenroos, Soili / Suija, Ave / Sunhede, Stellan / Svantesson, Sten / Svensson, Sigvard / Svetasheva, Tatyana Yu / Świerkosz, Krzysztof / Tamm, Heidi / Taskin, Hatira / Taudière, Adrien / Tedebrand, Jan-Olof / Lahoz, Raúl Tena / Temina, Marina / Thell, Arne / Thines, Marco / Thor, Göran / Thüs, Holger / Tibell, Leif / Tibell, Sanja / Timdal, Einar / Tkalčec, Zdenko / Tønsberg, Tor / Trichies, Gérard / Triebel, Dagmar / Tsurykau, Andrei / Tulloss, Rodham E / Tuovinen, Veera / Sosa, Miguel Ulloa / Urcelay, Carlos / Valade, François / Garza, Ricardo Valenzuela / van den Boom, Pieter / Van Vooren, Nicolas / Vasco-Palacios, Aida M / Vauras, Jukka / Velasco Santos, Juan Manuel / Vellinga, Else / Verbeken, Annemieke / Vetlesen, Per / Vizzini, Alfredo / Voglmayr, Hermann / Volobuev, Sergey / von Brackel, Wolfgang / Voronina, Elena / Walther, Grit / Watling, Roy / Weber, Evi / Wedin, Mats / Weholt, Øyvind / Westberg, Martin / Yurchenko, Eugene / Zehnálek, Petr / Zhang, Huang / Zhurbenko, Mikhail P / Ekman, Stefan

    IMA fungus

    2018  Volume 9, Issue 1, Page(s) 167–175

    Abstract: Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological ... ...

    Abstract Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological diversity) with nomenclature (an artificial agreement to name biological diversity). Two proposals to amend the International Code of Nomenclature for algae, fungi, and plants (ICN), allowing DNA sequences alone (of any region and extent) to serve as types of taxon names for voucherless fungi (mainly putative taxa from environmental DNA sequences), have been submitted to be voted on at the 11
    Language English
    Publishing date 2018-05-24
    Publishing country England
    Document type Journal Article
    ZDB-ID 2666116-0
    ISSN 2210-6359 ; 2210-6340
    ISSN (online) 2210-6359
    ISSN 2210-6340
    DOI 10.5598/imafungus.2018.09.01.10
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Considerations and consequences of allowing DNA sequence data as types of fungal taxa.

    Zamora, Juan Carlos / Svensson, Måns / Kirschner, Roland / Olariaga, Ibai / Ryman, Svengunnar / Parra, Luis Alberto / Geml, József / Rosling, Anna / Adamčík, Slavomír / Ahti, Teuvo / Aime, M Catherine / Ainsworth, A Martyn / Albert, László / Albertó, Edgardo / García, Alberto Altés / Ageev, Dmitry / Agerer, Reinhard / Aguirre-Hudson, Begoña / Ammirati, Joe /
    Andersson, Harry / Angelini, Claudio / Antonín, Vladimír / Aoki, Takayuki / Aptroot, André / Argaud, Didier / Sosa, Blanca Imelda Arguello / Aronsen, Arne / Arup, Ulf / Asgari, Bita / Assyov, Boris / Atienza, Violeta / Bandini, Ditte / Baptista-Ferreira, João Luís / Baral, Hans-Otto / Baroni, Tim / Barreto, Robert Weingart / Beker, Henry / Bell, Ann / Bellanger, Jean-Michel / Bellù, Francesco / Bemmann, Martin / Bendiksby, Mika / Bendiksen, Egil / Bendiksen, Katriina / Benedek, Lajos / Bérešová-Guttová, Anna / Berger, Franz / Berndt, Reinhard / Bernicchia, Annarosa / Biketova, Alona Yu / Bizio, Enrico / Bjork, Curtis / Boekhout, Teun / Boertmann, David / Böhning, Tanja / Boittin, Florent / Boluda, Carlos G / Boomsluiter, Menno W / Borovička, Jan / Brandrud, Tor Erik / Braun, Uwe / Brodo, Irwin / Bulyonkova, Tatiana / Burdsall, Harold H / Buyck, Bart / Burgaz, Ana Rosa / Calatayud, Vicent / Callac, Philippe / Campo, Emanuele / Candusso, Massimo / Capoen, Brigitte / Carbó, Joaquim / Carbone, Matteo / Castañeda-Ruiz, Rafael F / Castellano, Michael A / Chen, Jie / Clerc, Philippe / Consiglio, Giovanni / Corriol, Gilles / Courtecuisse, Régis / Crespo, Ana / Cripps, Cathy / Crous, Pedro W / da Silva, Gladstone Alves / da Silva, Meiriele / Dam, Marjo / Dam, Nico / Dämmrich, Frank / Das, Kanad / Davies, Linda / De Crop, Eske / De Kesel, Andre / De Lange, Ruben / De Madrignac Bonzi, Bárbara / Dela Cruz, Thomas Edison E / Delgat, Lynn / Demoulin, Vincent / Desjardin, Dennis E / Diederich, Paul / Dima, Bálint / Dios, Maria Martha / Divakar, Pradeep Kumar / Douanla-Meli, Clovis / Douglas, Brian / Drechsler-Santos, Elisandro Ricardo / Dyer, Paul S / Eberhardt, Ursula / Ertz, Damien / Esteve-Raventós, Fernando / Salazar, Javier Angel Etayo / Evenson, Vera / Eyssartier, Guillaume / Farkas, Edit / Favre, Alain / Fedosova, Anna G / Filippa, Mario / Finy, Péter / Flakus, Adam / Fos, Simón / Fournier, Jacques / Fraiture, André / Franchi, Paolo / Molano, Ana Esperanza Franco / Friebes, Gernot / Frisch, Andreas / Fryday, Alan / Furci, Giuliana / Márquez, Ricardo Galán / Garbelotto, Matteo / García-Martín, Joaquina María / Otálora, Mónica A García / Sánchez, Dania García / Gardiennet, Alain / Garnica, Sigisfredo / Benavent, Isaac Garrido / Gates, Genevieve / da Cruz Lima Gerlach, Alice / Ghobad-Nejhad, Masoomeh / Gibertoni, Tatiana B / Grebenc, Tine / Greilhuber, Irmgard / Grishkan, Bella / Groenewald, Johannes Z / Grube, Martin / Gruhn, Gérald / Gueidan, Cécile / Gulden, Gro / Gusmão, Luis Fp / Hafellner, Josef / Hairaud, Michel / Halama, Marek / Hallenberg, Nils / Halling, Roy E / Hansen, Karen / Harder, Christoffer Bugge / Heilmann-Clausen, Jacob / Helleman, Stip / Henriot, Alain / Hernandez-Restrepo, Margarita / Herve, Raphaël / Hobart, Caroline / Hoffmeister, Mascha / Høiland, Klaus / Holec, Jan / Holien, Håkon / Hughes, Karen / Hubka, Vit / Huhtinen, Seppo / Ivančević, Boris / Jagers, Marian / Jaklitsch, Walter / Jansen, AnnaElise / Jayawardena, Ruvishika S / Jeppesen, Thomas Stjernegaard / Jeppson, Mikael / Johnston, Peter / Jørgensen, Per Magnus / Kärnefelt, Ingvar / Kalinina, Liudmila B / Kantvilas, Gintaras / Karadelev, Mitko / Kasuya, Taiga / Kautmanová, Ivona / Kerrigan, Richard W / Kirchmair, Martin / Kiyashko, Anna / Knapp, Dániel G / Knudsen, Henning / Knudsen, Kerry / Knutsson, Tommy / Kolařík, Miroslav / Kõljalg, Urmas / Košuthová, Alica / Koszka, Attila / Kotiranta, Heikki / Kotkova, Vera / Koukol, Ondřej / Kout, Jiří / Kovács, Gábor M / Kříž, Martin / Kruys, Åsa / Kučera, Viktor / Kudzma, Linas / Kuhar, Francisco / Kukwa, Martin / Arun Kumar, T K / Kunca, Vladimír / Kušan, Ivana / Kuyper, Thomas W / Lado, Carlos / Læssøe, Thomas / Lainé, Patrice / Langer, Ewald / Larsson, Ellen / Larsson, Karl-Henrik / Laursen, Gary / Lechat, Christian / Lee, Serena / Lendemer, James C / Levin, Laura / Lindemann, Uwe / Lindström, Håkan / Liu, Xingzhong / Hernandez, Regulo Carlos Llarena / Llop, Esteve / Locsmándi, Csaba / Lodge, Deborah Jean / Loizides, Michael / Lőkös, László / Luangsa-Ard, Jennifer / Lüderitz, Matthias / Lumbsch, Thorsten / Lutz, Matthias / Mahoney, Dan / Malysheva, Ekaterina / Malysheva, Vera / Manimohan, Patinjareveettil / Marin-Felix, Yasmina / Marques, Guilhermina / Martínez-Gil, Rubén / Marson, Guy / Mata, Gerardo / Matheny, P Brandon / Mathiassen, Geir Harald / Matočec, Neven / Mayrhofer, Helmut / Mehrabi, Mehdi / Melo, Ireneia / Mešić, Armin / Methven, Andrew S / Miettinen, Otto / Romero, Ana M Millanes / Miller, Andrew N / Mitchell, James K / Moberg, Roland / Moreau, Pierre-Arthur / Moreno, Gabriel / Morozova, Olga / Morte, Asunción / Muggia, Lucia / González, Guillermo Muñoz / Myllys, Leena / Nagy, István / Nagy, László G / Neves, Maria Alice / Niemelä, Tuomo / Nimis, Pier Luigi / Niveiro, Nicolas / Noordeloos, Machiel E / Nordin, Anders / Noumeur, Sara Raouia / Novozhilov, Yuri / Nuytinck, Jorinde / Ohenoja, Esteri / Fiuza, Patricia Oliveira / Orange, Alan / Ordynets, Alexander / Ortiz-Santana, Beatriz / Pacheco, Leticia / Pál-Fám, Ferenc / Palacio, Melissa / Palice, Zdeněk / Papp, Viktor / Pärtel, Kadri / Pawlowska, Julia / Paz, Aurelia / Peintner, Ursula / Pennycook, Shaun / Pereira, Olinto Liparini / Daniëls, Pablo Pérez / Pérez-De-Gregorio Capella, Miquel À / Del Amo, Carlos Manuel Pérez / Gorjón, Sergio Pérez / Pérez-Ortega, Sergio / Pérez-Vargas, Israel / Perry, Brian A / Petersen, Jens H / Petersen, Ronald H / Pfister, Donald H / Phukhamsakda, Chayanard / Piątek, Marcin / Piepenbring, Meike / Pino-Bodas, Raquel / Esquivel, Juan Pablo Pinzón / Pirot, Paul / Popov, Eugene S / Popoff, Orlando / Álvaro, María Prieto / Printzen, Christian / Psurtseva, Nadezhda / Purahong, Witoon / Quijada, Luis / Rambold, Gerhard / Ramírez, Natalia A / Raja, Huzefa / Raspé, Olivier / Raymundo, Tania / Réblová, Martina / Rebriev, Yury A / de Dios Reyes García, Juan / Ripoll, Miguel Ángel Ribes / Richard, Franck / Richardson, Mike J / Rico, Víctor J / Robledo, Gerardo Lucio / Barbosa, Flavia Rodrigues / Rodriguez-Caycedo, Cristina / Rodriguez-Flakus, Pamela / Ronikier, Anna / Casas, Luis Rubio / Rusevska, Katerina / Saar, Günter / Saar, Irja / Salcedo, Isabel / Martínez, Sergio M Salcedo / Montoya, Carlos A Salvador / Sánchez-Ramírez, Santiago / Sandoval-Sierra, J Vladimir / Santamaria, Sergi / Monteiro, Josiane Santana / Schroers, Hans Josef / Schulz, Barbara / Schmidt-Stohn, Geert / Schumacher, Trond / Senn-Irlet, Beatrice / Ševčíková, Hana / Shchepin, Oleg / Shirouzu, Takashi / Shiryaev, Anton / Siepe, Klaus / Sir, Esteban B / Sohrabi, Mohammad / Soop, Karl / Spirin, Viacheslav / Spribille, Toby / Stadler, Marc / Stalpers, Joost / Stenroos, Soili / Suija, Ave / Sunhede, Stellan / Svantesson, Sten / Svensson, Sigvard / Svetasheva, Tatyana Yu / Świerkosz, Krzysztof / Tamm, Heidi / Taskin, Hatira / Taudière, Adrien / Tedebrand, Jan-Olof / Lahoz, Raúl Tena / Temina, Marina / Thell, Arne / Thines, Marco / Thor, Göran / Thüs, Holger / Tibell, Leif / Tibell, Sanja / Timdal, Einar / Tkalčec, Zdenko / Tønsberg, Tor / Trichies, Gérard / Triebel, Dagmar / Tsurykau, Andrei / Tulloss, Rodham E / Tuovinen, Veera / Sosa, Miguel Ulloa / Urcelay, Carlos / Valade, François / Garza, Ricardo Valenzuela / van den Boom, Pieter / Van Vooren, Nicolas / Vasco-Palacios, Aida M / Vauras, Jukka / Velasco Santos, Juan Manuel / Vellinga, Else / Verbeken, Annemieke / Vetlesen, Per / Vizzini, Alfredo / Voglmayr, Hermann / Volobuev, Sergey / von Brackel, Wolfgang / Voronina, Elena / Walther, Grit / Watling, Roy / Weber, Evi / Wedin, Mats / Weholt, Øyvind / Westberg, Martin / Yurchenko, Eugene / Zehnálek, Petr / Zhang, Huang / Zhurbenko, Mikhail P / Ekman, Stefan

    IMA fungus

    2018  

    Abstract: Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological ... ...

    Abstract Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological diversity) with nomenclature (an artificial agreement to name biological diversity). Two proposals to amend the International Code of Nomenclature for algae, fungi, and plants (ICN), allowing DNA sequences alone (of any region and extent) to serve as types of taxon names for voucherless fungi (mainly putative taxa from environmental DNA sequences), have been submitted to be voted on at the 11th International Mycological Congress (Puerto Rico, July 2018). We consider various genetic processes affecting the distribution of alleles among taxa and find that alleles may not consistently and uniquely represent the species within which they are contained. Should the proposals be accepted, the meaning of nomenclatural types would change in a fundamental way from physical objects as sources of data to the data themselves. Such changes are conducive to irreproducible science, the potential typification on artefactual data, and massive creation of names with low information content, ultimately causing nomenclatural instability and unnecessary work for future researchers that would stall future explorations of fungal diversity. We conclude that the acceptance of DNA sequences alone as types of names of taxa, under the terms used in the current proposals, is unnecessary and would not solve the problem of naming putative taxa known only from DNA sequences in a scientifically defensible way. As an alternative, we highlight the use of formulas for naming putative taxa (candidate taxa) that do not require any modification of the ICN.
    Keywords IMC11 ; nomenclature ; speciation ; taxonomy ; typification ; voucherless fungi
    Subject code 612
    Publishing date 2018-06-01
    Publishing country de
    Document type Article ; Online
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  5. Article ; Online: Considerations and consequences of allowing DNA sequence data as types of fungal taxa.

    Zamora, Juan Carlos / Svensson, Måns / Kirschner, Roland / Olariaga, Ibai / Ryman, Svengunnar / Parra, Luis Alberto / Geml, József / Rosling, Anna / Adamčík, Slavomír / Ahti, Teuvo / Aime, M Catherine / Ainsworth, A Martyn / Albert, László / Albertó, Edgardo / García, Alberto Altés / Ageev, Dmitry / Agerer, Reinhard / Aguirre-Hudson, Begoña / Ammirati, Joe /
    Andersson, Harry / Angelini, Claudio / Antonín, Vladimír / Aoki, Takayuki / Aptroot, André / Argaud, Didier / Sosa, Blanca Imelda Arguello / Aronsen, Arne / Arup, Ulf / Asgari, Bita / Assyov, Boris / Atienza, Violeta / Bandini, Ditte / Baptista-Ferreira, João Luís / Baral, Hans-Otto / Baroni, Tim / Barreto, Robert Weingart / Beker, Henry / Bell, Ann / Bellanger, Jean-Michel / Bellù, Francesco / Bemmann, Martin / Bendiksby, Mika / Bendiksen, Egil / Bendiksen, Katriina / Benedek, Lajos / Bérešová-Guttová, Anna / Berger, Franz / Berndt, Reinhard / Bernicchia, Annarosa / Biketova, Alona Yu / Bizio, Enrico / Bjork, Curtis / Boekhout, Teun / Boertmann, David / Böhning, Tanja / Boittin, Florent / Boluda, Carlos G / Boomsluiter, Menno W / Borovička, Jan / Brandrud, Tor Erik / Braun, Uwe / Brodo, Irwin / Bulyonkova, Tatiana / Burdsall, Harold H / Buyck, Bart / Burgaz, Ana Rosa / Calatayud, Vicent / Callac, Philippe / Campo, Emanuele / Candusso, Massimo / Capoen, Brigitte / Carbó, Joaquim / Carbone, Matteo / Castañeda-Ruiz, Rafael F / Castellano, Michael A / Chen, Jie / Clerc, Philippe / Consiglio, Giovanni / Corriol, Gilles / Courtecuisse, Régis / Crespo, Ana / Cripps, Cathy / Crous, Pedro W / da Silva, Gladstone Alves / da Silva, Meiriele / Dam, Marjo / Dam, Nico / Dämmrich, Frank / Das, Kanad / Davies, Linda / De Crop, Eske / De Kesel, Andre / De Lange, Ruben / De Madrignac Bonzi, Bárbara / Dela Cruz, Thomas Edison E / Delgat, Lynn / Demoulin, Vincent / Desjardin, Dennis E / Diederich, Paul / Dima, Bálint / Dios, Maria Martha / Divakar, Pradeep Kumar / Douanla-Meli, Clovis / Douglas, Brian / Drechsler-Santos, Elisandro Ricardo / Dyer, Paul S / Eberhardt, Ursula / Ertz, Damien / Esteve-Raventós, Fernando / Salazar, Javier Angel Etayo / Evenson, Vera / Eyssartier, Guillaume / Farkas, Edit / Favre, Alain / Fedosova, Anna G / Filippa, Mario / Finy, Péter / Flakus, Adam / Fos, Simón / Fournier, Jacques / Fraiture, André / Franchi, Paolo / Molano, Ana Esperanza Franco / Friebes, Gernot / Frisch, Andreas / Fryday, Alan / Furci, Giuliana / Márquez, Ricardo Galán / Garbelotto, Matteo / García-Martín, Joaquina María / Otálora, Mónica A García / Sánchez, Dania García / Gardiennet, Alain / Garnica, Sigisfredo / Benavent, Isaac Garrido / Gates, Genevieve / da Cruz Lima Gerlach, Alice / Ghobad-Nejhad, Masoomeh / Gibertoni, Tatiana B / Grebenc, Tine / Greilhuber, Irmgard / Grishkan, Bella / Groenewald, Johannes Z / Grube, Martin / Gruhn, Gérald / Gueidan, Cécile / Gulden, Gro / Gusmão, Luis Fp / Hafellner, Josef / Hairaud, Michel / Halama, Marek / Hallenberg, Nils / Halling, Roy E / Hansen, Karen / Harder, Christoffer Bugge / Heilmann-Clausen, Jacob / Helleman, Stip / Henriot, Alain / Hernandez-Restrepo, Margarita / Herve, Raphaël / Hobart, Caroline / Hoffmeister, Mascha / Høiland, Klaus / Holec, Jan / Holien, Håkon / Hughes, Karen / Hubka, Vit / Huhtinen, Seppo / Ivančević, Boris / Jagers, Marian / Jaklitsch, Walter / Jansen, AnnaElise / Jayawardena, Ruvishika S / Jeppesen, Thomas Stjernegaard / Jeppson, Mikael / Johnston, Peter / Jørgensen, Per Magnus / Kärnefelt, Ingvar / Kalinina, Liudmila B / Kantvilas, Gintaras / Karadelev, Mitko / Kasuya, Taiga / Kautmanová, Ivona / Kerrigan, Richard W / Kirchmair, Martin / Kiyashko, Anna / Knapp, Dániel G / Knudsen, Henning / Knudsen, Kerry / Knutsson, Tommy / Kolařík, Miroslav / Kõljalg, Urmas / Košuthová, Alica / Koszka, Attila / Kotiranta, Heikki / Kotkova, Vera / Koukol, Ondřej / Kout, Jiří / Kovács, Gábor M / Kříž, Martin / Kruys, Åsa / Kučera, Viktor / Kudzma, Linas / Kuhar, Francisco / Kukwa, Martin / Arun Kumar, T K / Kunca, Vladimír / Kušan, Ivana / Kuyper, Thomas W / Lado, Carlos / Læssøe, Thomas / Lainé, Patrice / Langer, Ewald / Larsson, Ellen / Larsson, Karl-Henrik / Laursen, Gary / Lechat, Christian / Lee, Serena / Lendemer, James C / Levin, Laura / Lindemann, Uwe / Lindström, Håkan / Liu, Xingzhong / Hernandez, Regulo Carlos Llarena / Llop, Esteve / Locsmándi, Csaba / Lodge, Deborah Jean / Loizides, Michael / Lőkös, László / Luangsa-Ard, Jennifer / Lüderitz, Matthias / Lumbsch, Thorsten / Lutz, Matthias / Mahoney, Dan / Malysheva, Ekaterina / Malysheva, Vera / Manimohan, Patinjareveettil / Marin-Felix, Yasmina / Marques, Guilhermina / Martínez-Gil, Rubén / Marson, Guy / Mata, Gerardo / Matheny, P Brandon / Mathiassen, Geir Harald / Matočec, Neven / Mayrhofer, Helmut / Mehrabi, Mehdi / Melo, Ireneia / Mešić, Armin / Methven, Andrew S / Miettinen, Otto / Romero, Ana M Millanes / Miller, Andrew N / Mitchell, James K / Moberg, Roland / Moreau, Pierre-Arthur / Moreno, Gabriel / Morozova, Olga / Morte, Asunción / Muggia, Lucia / González, Guillermo Muñoz / Myllys, Leena / Nagy, István / Nagy, László G / Neves, Maria Alice / Niemelä, Tuomo / Nimis, Pier Luigi / Niveiro, Nicolas / Noordeloos, Machiel E / Nordin, Anders / Noumeur, Sara Raouia / Novozhilov, Yuri / Nuytinck, Jorinde / Ohenoja, Esteri / Fiuza, Patricia Oliveira / Orange, Alan / Ordynets, Alexander / Ortiz-Santana, Beatriz / Pacheco, Leticia / Pál-Fám, Ferenc / Palacio, Melissa / Palice, Zdeněk / Papp, Viktor / Pärtel, Kadri / Pawlowska, Julia / Paz, Aurelia / Peintner, Ursula / Pennycook, Shaun / Pereira, Olinto Liparini / Daniëls, Pablo Pérez / Pérez-De-Gregorio Capella, Miquel À / Del Amo, Carlos Manuel Pérez / Gorjón, Sergio Pérez / Pérez-Ortega, Sergio / Pérez-Vargas, Israel / Perry, Brian A / Petersen, Jens H / Petersen, Ronald H / Pfister, Donald H / Phukhamsakda, Chayanard / Piątek, Marcin / Piepenbring, Meike / Pino-Bodas, Raquel / Esquivel, Juan Pablo Pinzón / Pirot, Paul / Popov, Eugene S / Popoff, Orlando / Álvaro, María Prieto / Printzen, Christian / Psurtseva, Nadezhda / Purahong, Witoon / Quijada, Luis / Rambold, Gerhard / Ramírez, Natalia A / Raja, Huzefa / Raspé, Olivier / Raymundo, Tania / Réblová, Martina / Rebriev, Yury A / de Dios Reyes García, Juan / Ripoll, Miguel Ángel Ribes / Richard, Franck / Richardson, Mike J / Rico, Víctor J / Robledo, Gerardo Lucio / Barbosa, Flavia Rodrigues / Rodriguez-Caycedo, Cristina / Rodriguez-Flakus, Pamela / Ronikier, Anna / Casas, Luis Rubio / Rusevska, Katerina / Saar, Günter / Saar, Irja / Salcedo, Isabel / Martínez, Sergio M Salcedo / Montoya, Carlos A Salvador / Sánchez-Ramírez, Santiago / Sandoval-Sierra, J Vladimir / Santamaria, Sergi / Monteiro, Josiane Santana / Schroers, Hans Josef / Schulz, Barbara / Schmidt-Stohn, Geert / Schumacher, Trond / Senn-Irlet, Beatrice / Ševčíková, Hana / Shchepin, Oleg / Shirouzu, Takashi / Shiryaev, Anton / Siepe, Klaus / Sir, Esteban B / Sohrabi, Mohammad / Soop, Karl / Spirin, Viacheslav / Spribille, Toby / Stadler, Marc / Stalpers, Joost / Stenroos, Soili / Suija, Ave / Sunhede, Stellan / Svantesson, Sten / Svensson, Sigvard / Svetasheva, Tatyana Yu / Świerkosz, Krzysztof / Tamm, Heidi / Taskin, Hatira / Taudière, Adrien / Tedebrand, Jan-Olof / Lahoz, Raúl Tena / Temina, Marina / Thell, Arne / Thines, Marco / Thor, Göran / Thüs, Holger / Tibell, Leif / Tibell, Sanja / Timdal, Einar / Tkalčec, Zdenko / Tønsberg, Tor / Trichies, Gérard / Triebel, Dagmar / Tsurykau, Andrei / Tulloss, Rodham E / Tuovinen, Veera / Sosa, Miguel Ulloa / Urcelay, Carlos / Valade, François / Garza, Ricardo Valenzuela / van den Boom, Pieter / Van Vooren, Nicolas / Vasco-Palacios, Aida M / Vauras, Jukka / Velasco Santos, Juan Manuel / Vellinga, Else / Verbeken, Annemieke / Vetlesen, Per / Vizzini, Alfredo / Voglmayr, Hermann / Volobuev, Sergey / von Brackel, Wolfgang / Voronina, Elena / Walther, Grit / Watling, Roy / Weber, Evi / Wedin, Mats / Weholt, Øyvind / Westberg, Martin / Yurchenko, Eugene / Zehnálek, Petr / Zhang, Huang / Zhurbenko, Mikhail P / Ekman, Stefan

    IMA fungus

    2018  

    Abstract: Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological ... ...

    Abstract Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological diversity) with nomenclature (an artificial agreement to name biological diversity). Two proposals to amend the International Code of Nomenclature for algae, fungi, and plants (ICN), allowing DNA sequences alone (of any region and extent) to serve as types of taxon names for voucherless fungi (mainly putative taxa from environmental DNA sequences), have been submitted to be voted on at the 11th International Mycological Congress (Puerto Rico, July 2018). We consider various genetic processes affecting the distribution of alleles among taxa and find that alleles may not consistently and uniquely represent the species within which they are contained. Should the proposals be accepted, the meaning of nomenclatural types would change in a fundamental way from physical objects as sources of data to the data themselves. Such changes are conducive to irreproducible science, the potential typification on artefactual data, and massive creation of names with low information content, ultimately causing nomenclatural instability and unnecessary work for future researchers that would stall future explorations of fungal diversity. We conclude that the acceptance of DNA sequences alone as types of names of taxa, under the terms used in the current proposals, is unnecessary and would not solve the problem of naming putative taxa known only from DNA sequences in a scientifically defensible way. As an alternative, we highlight the use of formulas for naming putative taxa (candidate taxa) that do not require any modification of the ICN.
    Keywords IMC11 ; nomenclature ; speciation ; taxonomy ; typification ; voucherless fungi
    Subject code 612
    Publishing date 2018-06-01
    Publishing country de
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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