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  1. Article ; Online: TFE3 promotes ferroptosis in melanoma.

    Dias, Diogo / Louphrasitthiphol, Pakavarin / Goding, Colin R

    Pigment cell & melanoma research

    2023  Volume 37, Issue 2, Page(s) 286–290

    MeSH term(s) Humans ; Melanoma/genetics ; Ferroptosis/genetics ; Basic Helix-Loop-Helix Leucine Zipper Transcription Factors
    Chemical Substances Basic Helix-Loop-Helix Leucine Zipper Transcription Factors ; TFE3 protein, human
    Language English
    Publishing date 2023-11-12
    Publishing country England
    Document type Letter
    ZDB-ID 2409570-9
    ISSN 1755-148X ; 1600-0749 ; 0893-5785 ; 1755-1471
    ISSN (online) 1755-148X ; 1600-0749
    ISSN 0893-5785 ; 1755-1471
    DOI 10.1111/pcmr.13149
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Macrophage Cytoplasmic Transfer in Melanoma Invasion.

    Louphrasitthiphol, Pakavarin / Goding, Colin R

    Developmental cell

    2017  Volume 43, Issue 5, Page(s) 543–544

    Abstract: Within tumors, macrophage infiltration can promote cancer cell invasiveness and, consequently, metastatic dissemination. In this issue of Developmental Cell, Roh-Johnson et al. (2017) reveal that cytoplasmic transfer from macrophages to melanoma cells ... ...

    Abstract Within tumors, macrophage infiltration can promote cancer cell invasiveness and, consequently, metastatic dissemination. In this issue of Developmental Cell, Roh-Johnson et al. (2017) reveal that cytoplasmic transfer from macrophages to melanoma cells correlates with melanoma invasion and arises as a result of intimate cell-cell contact.
    MeSH term(s) Animals ; Cell Line, Tumor ; Cytoplasm/metabolism ; Humans ; Macrophages/pathology ; Melanoma/metabolism ; Neoplasm Invasiveness/pathology
    Language English
    Publishing date 2017--04
    Publishing country United States
    Document type Journal Article ; Review ; Comment
    ZDB-ID 2054967-2
    ISSN 1878-1551 ; 1534-5807
    ISSN (online) 1878-1551
    ISSN 1534-5807
    DOI 10.1016/j.devcel.2017.11.012
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Novel positron emission tomography imaging targeting cell surface glycans for pancreatic cancer:

    Kuroda, Yukihito / Oda, Tatsuya / Shimomura, Osamu / Louphrasitthiphol, Pakavarin / Mathis, Bryan J / Tateno, Hiroaki / Hatano, Kentaro

    Cancer science

    2023  Volume 114, Issue 8, Page(s) 3364–3373

    Abstract: Advancement in early detection modalities will greatly improve the overall prognoses of pancreatic ductal adenocarcinoma (PDAC). For this purpose, we report a novel class of tumor-specific probes for positron emission tomography (PET) based on targeting ... ...

    Abstract Advancement in early detection modalities will greatly improve the overall prognoses of pancreatic ductal adenocarcinoma (PDAC). For this purpose, we report a novel class of tumor-specific probes for positron emission tomography (PET) based on targeting cell surface glycans. The PDAC-targeting ability of rBC2LCN lectin, combined with fluorine-18 (
    MeSH term(s) Humans ; Mice ; Animals ; Mice, Nude ; Cell Line, Tumor ; Positron-Emission Tomography/methods ; Pancreatic Neoplasms/diagnostic imaging ; Carcinoma, Pancreatic Ductal ; Radiopharmaceuticals ; Pancreatic Neoplasms
    Chemical Substances Fluorine-18 (GZ5I74KB8G) ; rBC2LCN lectin ; Radiopharmaceuticals
    Language English
    Publishing date 2023-05-19
    Publishing country England
    Document type Journal Article
    ZDB-ID 2115647-5
    ISSN 1349-7006 ; 1349-7006
    ISSN (online) 1349-7006
    ISSN 1349-7006
    DOI 10.1111/cas.15846
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Hypoxia at 3D organoid establishment selects essential subclones within heterogenous pancreatic cancer.

    Kumano, Koichiro / Nakahashi, Hiromitsu / Louphrasitthiphol, Pakavarin / Kuroda, Yukihito / Miyazaki, Yoshihiro / Shimomura, Osamu / Hashimoto, Shinji / Akashi, Yoshimasa / Mathis, Bryan J / Kim, Jaejeong / Owada, Yohei / Goding, Colin R / Oda, Tatsuya

    Frontiers in cell and developmental biology

    2024  Volume 12, Page(s) 1327772

    Abstract: Pancreatic ductal adenocarcinoma (PDAC) is especially hypoxic and composed of heterogeneous cell populations containing hypoxia-adapted cells. Hypoxia as a microenvironment of PDAC is known to cause epithelial-mesenchymal transition (EMT) and resistance ... ...

    Abstract Pancreatic ductal adenocarcinoma (PDAC) is especially hypoxic and composed of heterogeneous cell populations containing hypoxia-adapted cells. Hypoxia as a microenvironment of PDAC is known to cause epithelial-mesenchymal transition (EMT) and resistance to therapy. Therefore, cells adapted to hypoxia possess malignant traits that should be targeted for therapy. However, current 3D organoid culture systems are usually cultured under normoxia, losing hypoxia-adapted cells due to selectivity bias at the time of organoid establishment. To overcome any potential selection bias, we focused on oxygen concentration during the establishment of 3D organoids. We subjected identical PDAC surgical samples to normoxia (O2 20%) or hypoxia (O2 1%), yielding glandular and solid organoid morphology, respectively. Pancreatic cancer organoids established under hypoxia displayed higher expression of EMT-related proteins, a Moffitt basal-like subtype transcriptome, and higher 5-FU resistance in contrast to organoids established under normoxia. We suggest that hypoxia during organoid establishment efficiently selects for hypoxia-adapted cells possibly responsible for PDAC malignant traits, facilitating a fundamental source for elucidating and developing new treatment strategies against PDAC.
    Language English
    Publishing date 2024-02-05
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2737824-X
    ISSN 2296-634X
    ISSN 2296-634X
    DOI 10.3389/fcell.2024.1327772
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: Phenotype-specific melanoma uptake of fatty acid from human adipocytes activates AXL and CAV1-dependent β-catenin nuclear accumulation.

    Chocarro-Calvo, Ana / Jociles-Ortega, Miguel / García-Martinez, José Manuel / Louphrasitthiphol, Pakavarin / Garcia, Yurena Vivas / Ramírez-Sánchez, Ana / Chauhan, Jagat / Fiuza, M Carmen / Duran, Manuel / García-Jiménez, Custodia / Goding, Colin R

    bioRxiv : the preprint server for biology

    2024  

    Abstract: Phenotypic diversity of cancer cells within tumors generated through bi-directional interactions with the tumor microenvironment has emerged as a major driver of disease progression and therapy resistance. Nutrient availability plays a critical role in ... ...

    Abstract Phenotypic diversity of cancer cells within tumors generated through bi-directional interactions with the tumor microenvironment has emerged as a major driver of disease progression and therapy resistance. Nutrient availability plays a critical role in determining phenotype, but whether specific nutrients elicit different responses on distinct phenotypes is poorly understood. Here we show, using melanoma as a model, that only MITF
    Language English
    Publishing date 2024-01-24
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2024.01.21.576568
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: DNA damage remodels the MITF interactome to increase melanoma genomic instability.

    Binet, Romuald / Lambert, Jean-Philippe / Tomkova, Marketa / Tischfield, Samuel / Baggiolini, Arianna / Picaud, Sarah / Sarkar, Sovan / Louphrasitthiphol, Pakavarin / Dias, Diogo / Carreira, Suzanne / Humphrey, Timothy C / Fillipakopoulos, Panagis / White, Richard / Goding, Colin R

    Genes & development

    2024  Volume 38, Issue 1-2, Page(s) 70–94

    Abstract: Since genome instability can drive cancer initiation and progression, cells have evolved highly effective and ubiquitous DNA damage response (DDR) programs. However, some cells (for example, in skin) are normally exposed to high levels of DNA-damaging ... ...

    Abstract Since genome instability can drive cancer initiation and progression, cells have evolved highly effective and ubiquitous DNA damage response (DDR) programs. However, some cells (for example, in skin) are normally exposed to high levels of DNA-damaging agents. Whether such high-risk cells possess lineage-specific mechanisms that tailor DNA repair to the tissue remains largely unknown. Using melanoma as a model, we show here that the microphthalmia-associated transcription factor MITF, a lineage addition oncogene that coordinates many aspects of melanocyte and melanoma biology, plays a nontranscriptional role in shaping the DDR. On exposure to DNA-damaging agents, MITF is phosphorylated at S325, and its interactome is dramatically remodeled; most transcription cofactors dissociate, and instead MITF interacts with the MRE11-RAD50-NBS1 (MRN) complex. Consequently, cells with high MITF levels accumulate stalled replication forks and display defects in homologous recombination-mediated repair associated with impaired MRN recruitment to DNA damage. In agreement with this, high MITF levels are associated with increased single-nucleotide and copy number variant burdens in melanoma. Significantly, the SUMOylation-defective MITF-E318K melanoma predisposition mutation recapitulates the effects of DNA-PKcs-phosphorylated MITF. Our data suggest that a nontranscriptional function of a lineage-restricted transcription factor contributes to a tissue-specialized modulation of the DDR that can impact cancer initiation.
    MeSH term(s) Humans ; Melanoma/genetics ; Microphthalmia-Associated Transcription Factor/genetics ; DNA Damage ; Genomic Instability/genetics ; DNA
    Chemical Substances Microphthalmia-Associated Transcription Factor ; DNA (9007-49-2) ; MITF protein, human
    Language English
    Publishing date 2024-02-13
    Publishing country United States
    Document type Journal Article
    ZDB-ID 806684-x
    ISSN 1549-5477 ; 0890-9369
    ISSN (online) 1549-5477
    ISSN 0890-9369
    DOI 10.1101/gad.350740.123
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: ABCB5 is activated by MITF and β-catenin and is associated with melanoma differentiation.

    Louphrasitthiphol, Pakavarin / Chauhan, Jagat / Goding, Colin R

    Pigment cell & melanoma research

    2019  Volume 33, Issue 1, Page(s) 112–118

    Abstract: Defining markers of different phenotypic states in melanoma is important for understanding disease progression, determining the response to therapy, and defining the molecular mechanisms underpinning phenotype-switching driven by the changing intratumor ... ...

    Abstract Defining markers of different phenotypic states in melanoma is important for understanding disease progression, determining the response to therapy, and defining the molecular mechanisms underpinning phenotype-switching driven by the changing intratumor microenvironment. The ABCB5 transporter is implicated in drug-resistance and has been identified as a marker of melanoma-initiating cells. Indeed ongoing studies are using ABCB5 to define stem cell populations. However, we show here that the ABCB5 is a direct target for the microphthalmia-associated transcription factor MITF and its expression can be induced by β-catenin, a key activator and co-factor for MITF. Consequently, ABCB5 mRNA expression is primarily associated with melanoma cells exhibiting differentiation markers. The results suggest first that ABCB5 is unlikely to represent a marker of de-differentiated melanoma stem cells, and second that ABCB5 may contribute to the non-genetic drug-resistance associated with highly differentiated melanoma cells. To reconcile the apparently conflicting observations in the field, we propose a model in which ABCB5 may mark a slow-cycling differentiated population of melanoma cells.
    MeSH term(s) ATP Binding Cassette Transporter, Subfamily B/genetics ; ATP Binding Cassette Transporter, Subfamily B/metabolism ; Base Sequence ; Cell Differentiation ; Gene Expression Regulation, Neoplastic ; Humans ; Melanoma/genetics ; Melanoma/metabolism ; Melanoma/pathology ; Microphthalmia-Associated Transcription Factor/metabolism ; Phenotype ; Skin Neoplasms/genetics ; Skin Neoplasms/metabolism ; Skin Neoplasms/pathology ; beta Catenin/metabolism
    Chemical Substances ABCB5 protein, human ; ATP Binding Cassette Transporter, Subfamily B ; Microphthalmia-Associated Transcription Factor ; beta Catenin
    Language English
    Publishing date 2019-10-28
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2409570-9
    ISSN 1755-148X ; 1600-0749 ; 0893-5785 ; 1755-1471
    ISSN (online) 1755-148X ; 1600-0749
    ISSN 0893-5785 ; 1755-1471
    DOI 10.1111/pcmr.12830
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article: Aberrant Glycosylation in Pancreatic Ductal Adenocarcinoma 3D Organoids Is Mediated by KRAS Mutations.

    Nakahashi, Hiromitsu / Oda, Tatsuya / Shimomura, Osamu / Akashi, Yoshimasa / Takahashi, Kazuhiro / Miyazaki, Yoshihiro / Furuta, Tomoaki / Kuroda, Yukihito / Louphrasitthiphol, Pakavarin / Mathis, Bryan J / Tateno, Hiroaki

    Journal of oncology

    2024  Volume 2024, Page(s) 1529449

    Abstract: Aberrant glycosylation in tumor cells is a hallmark during carcinogenesis. KRAS gene mutations are the most well-known oncogenic abnormalities but their association with glycan alterations in pancreatic ductal adenocarcinoma (PDAC) is largely unknown. We ...

    Abstract Aberrant glycosylation in tumor cells is a hallmark during carcinogenesis. KRAS gene mutations are the most well-known oncogenic abnormalities but their association with glycan alterations in pancreatic ductal adenocarcinoma (PDAC) is largely unknown. We employed patient-derived 3D organoids to culture pure live PDAC cells, excluding contamination by fibroblasts and immune cells, to gasp the comprehensive cancer cell surface glycan expression profile using lectin microarray and transcriptomic analyses. Surgical specimens from 24 PDAC patients were digested and embedded into a 3D culture system. Surface-bound glycans of 3D organoids were analyzed by high-density, 96-lectin microarrays. KRAS mutation status and expression of various glycosyltransferases were analyzed by RNA-seq. We successfully established 16 3D organoids: 14 PDAC, 1 intraductal papillary mucinous neoplasm (IPMN), and 1 normal pancreatic duct. KRAS was mutated in 13 (7 G12V, 5 G12D, 1 Q61L) and wild in 3 organoids (1 normal duct, 1 IPMN, 1 PDAC). Lectin reactivity of AAL (
    Language English
    Publishing date 2024-03-18
    Publishing country Egypt
    Document type Journal Article
    ZDB-ID 2461349-6
    ISSN 1687-8469 ; 1687-8450
    ISSN (online) 1687-8469
    ISSN 1687-8450
    DOI 10.1155/2024/1529449
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article: Loss of MC1R signaling implicates TBX3 in pheomelanogenesis and melanoma predisposition.

    Berns, H Matthew / Watkins-Chow, Dawn E / Lu, Sizhu / Louphrasitthiphol, Pakavarin / Zhang, Tongwu / Brown, Kevin M / Moura-Alves, Pedro / Goding, Colin R / Pavan, William J

    bioRxiv : the preprint server for biology

    2023  

    Abstract: The human Red Hair Color (RHC) trait is caused by increased pheomelanin (red-yellow) and reduced eumelanin (black-brown) pigment in skin and hair due to diminished melanocortin 1 receptor (MC1R) function. In addition, individuals harboring the RHC trait ... ...

    Abstract The human Red Hair Color (RHC) trait is caused by increased pheomelanin (red-yellow) and reduced eumelanin (black-brown) pigment in skin and hair due to diminished melanocortin 1 receptor (MC1R) function. In addition, individuals harboring the RHC trait are predisposed to melanoma development. While
    Language English
    Publishing date 2023-03-13
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2023.03.10.532018
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article: DNA damage-induced interaction between a lineage addiction oncogenic transcription factor and the MRN complex shapes a tissue-specific DNA Damage Response and cancer predisposition.

    Binet, Romuald / Lambert, Jean-Philippe / Tomkova, Marketa / Tischfield, Samuel / Baggiolini, Arianna / Picaud, Sarah / Sarkar, Sovan / Louphrasitthiphol, Pakavarin / Dias, Diogo / Carreira, Suzanne / Humphrey, Timothy / Fillipakopoulos, Panagis / White, Richard / Goding, Colin R

    bioRxiv : the preprint server for biology

    2023  

    Abstract: Since genome instability can drive cancer initiation and progression, cells have evolved highly effective and ubiquitous DNA Damage Response (DDR) programs. However, some cells, in skin for example, are normally exposed to high levels of DNA damaging ... ...

    Abstract Since genome instability can drive cancer initiation and progression, cells have evolved highly effective and ubiquitous DNA Damage Response (DDR) programs. However, some cells, in skin for example, are normally exposed to high levels of DNA damaging agents. Whether such high-risk cells possess lineage-specific mechanisms that tailor DNA repair to the tissue remains largely unknown. Here we show, using melanoma as a model, that the microphthalmia-associated transcription factor MITF, a lineage addition oncogene that coordinates many aspects of melanocyte and melanoma biology, plays a non-transcriptional role in shaping the DDR. On exposure to DNA damaging agents, MITF is phosphorylated by ATM/DNA-PKcs, and unexpectedly its interactome is dramatically remodelled; most transcription (co)factors dissociate, and instead MITF interacts with the MRE11-RAD50-NBS1 (MRN) complex. Consequently, cells with high MITF levels accumulate stalled replication forks, and display defects in homologous recombination-mediated repair associated with impaired MRN recruitment to DNA damage. In agreement, high MITF levels are associated with increased SNV burden in melanoma. Significantly, the SUMOylation-defective MITF-E318K melanoma predisposition mutation recapitulates the effects of ATM/DNA-PKcs-phosphorylated MITF. Our data suggest that a non-transcriptional function of a lineage-restricted transcription factor contributes to a tissue-specialised modulation of the DDR that can impact cancer initiation.
    Language English
    Publishing date 2023-04-21
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2023.04.21.537819
    Database MEDical Literature Analysis and Retrieval System OnLINE

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