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  1. Article: A novel lipid metabolism-related lncRNA signature predictive of clinical prognosis in cervical cancer.

    Lu, Yanzhen / He, Xiujun / Fang, Xia / Chai, Ningxia / Xu, Fangfang

    Frontiers in genetics

    2022  Volume 13, Page(s) 1001347

    Abstract: Background: ...

    Abstract Background:
    Language English
    Publishing date 2022-10-17
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2606823-0
    ISSN 1664-8021
    ISSN 1664-8021
    DOI 10.3389/fgene.2022.1001347
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Bioinformatics-Based Analysis of lncRNA-mRNA Interaction Network of Mild Hepatic Encephalopathy in Cirrhosis.

    Wang, Ke / Lu, Yanzhen / Zhao, Zhifeng / Zhang, Chihao

    Computational and mathematical methods in medicine

    2021  Volume 2021, Page(s) 7777699

    Abstract: Backgrounds: Serum long noncoding RNAs (lncRNAs) and messenger RNAs (mRNAs) interaction network was discovered to exert an important role in liver cirrhosis while little is known in mild hepatic encephalopathy (MHE). Therefore, we aim to systematically ... ...

    Abstract Backgrounds: Serum long noncoding RNAs (lncRNAs) and messenger RNAs (mRNAs) interaction network was discovered to exert an important role in liver cirrhosis while little is known in mild hepatic encephalopathy (MHE). Therefore, we aim to systematically evaluate the serum lncRNA-mRNA network and its regulatory mechanism in MHE.
    Methods: The data of serum mRNAs and lncRNAs were derived from the Gene Expression Omnibus (GEO) database. The differentially expressed genes (DEGs) were calculated between 11 cirrhotic patients with and without MHE. Next, the biological functions and underlined pathways of DEGs were determined through Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses. Finally, an interactive network between lncRNAs and mRNAs was built, and hub genes were identified, respectively.
    Results: A total of 64 differentially expressed lncRNAs (dif-lncRNAs) were found between patients with and without MHE, including 30 up- and 34 downregulated genes. 187 differentially expressed mRNAs (dif-mRNAs) were identified, including 84 up- and 103 downregulated genes. Functional enrichment analysis suggested that the regulatory pathways involved in MHE mainly consisted of a series of immune and inflammatory responses. Several hub mRNAs involved in regulatory network were identified, including CCL5, CCR5, CXCR3, CD274, STAT1, CXCR6, and EOMES. In addition, lnc-FAM84B-8 and lnc-SAMD3-1 were found to regulate these above hub genes through building a lncRNA-mRNA network.
    Conclusion: This is the first study to construct the serum lncRNA-mRNA network in MHE, demonstrating the critical role of lncRNAs in regulating inflammatory and immunological profiles in the developing of MHE, suggesting a latent mechanism in this pathophysiological process.
    MeSH term(s) Computational Biology ; Databases, Nucleic Acid ; Down-Regulation ; Gene Expression Profiling ; Gene Ontology ; Gene Regulatory Networks ; Hepatic Encephalopathy/etiology ; Hepatic Encephalopathy/genetics ; Humans ; Liver Cirrhosis/complications ; Liver Cirrhosis/genetics ; Protein Interaction Maps/genetics ; RNA, Long Noncoding/blood ; RNA, Long Noncoding/genetics ; RNA, Messenger/blood ; RNA, Messenger/genetics ; Up-Regulation
    Chemical Substances RNA, Long Noncoding ; RNA, Messenger
    Language English
    Publishing date 2021-12-13
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2252430-7
    ISSN 1748-6718 ; 1748-670X ; 1027-3662
    ISSN (online) 1748-6718
    ISSN 1748-670X ; 1027-3662
    DOI 10.1155/2021/7777699
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Transcriptome Analysis of LLC-PK Cells Single or Coinfected with Porcine Epidemic Diarrhea Virus and Porcine Deltacoronavirus.

    Lu, Yanzhen / Yu, Ruiming / Tong, Lixin / Zhang, Liping / Zhang, Zhongwang / Pan, Li / Wang, Yonglu / Guo, Huichen / Hu, Yonghao / Liu, Xinsheng

    Viruses

    2023  Volume 16, Issue 1

    Abstract: Porcine epidemic diarrhea virus (PEDV) and porcine deltacoronavirus (PDCoV) are the two most prevalent swine enteric coronaviruses worldwide. They commonly cause natural coinfections, which worsen as the disease progresses and cause increased mortality ... ...

    Abstract Porcine epidemic diarrhea virus (PEDV) and porcine deltacoronavirus (PDCoV) are the two most prevalent swine enteric coronaviruses worldwide. They commonly cause natural coinfections, which worsen as the disease progresses and cause increased mortality in piglets. To better understand the transcriptomic changes after PEDV and PDCoV coinfection, we compared LLC porcine kidney (LLC-PK) cells infected with PEDV and/or PDCoV and evaluated the differential expression of genes by transcriptomic analysis and real-time qPCR. The antiviral efficacy of interferon-stimulated gene 20 (ISG20) against PDCoV and PEDV infections was also assessed. Differentially expressed genes (DEGs) were detected in PEDV-, PDCoV-, and PEDV + PDCoV-infected cells at 6, 12, and 24 h post-infection (hpi), and at 24 hpi, the number of DEGs was the highest. Furthermore, changes in the expression of interferons, which are mainly related to apoptosis and activation of the host innate immune pathway, were found in the PEDV and PDCoV infection and coinfection groups. Additionally, 43 ISGs, including GBP2, IRF1, ISG20, and IFIT2, were upregulated during PEDV or PDCoV infection. Furthermore, we found that ISG20 significantly inhibited PEDV and PDCoV infection in LLC-PK cells. The transcriptomic profiles of cells coinfected with PEDV and PDCoV were reported, providing reference data for understanding the host response to PEDV and PDCoV coinfection.
    MeSH term(s) Animals ; Swine ; Porcine epidemic diarrhea virus/genetics ; Coinfection/veterinary ; Deltacoronavirus/genetics ; Gene Expression Profiling ; Interferons/genetics
    Chemical Substances Interferons (9008-11-1)
    Language English
    Publishing date 2023-12-31
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2516098-9
    ISSN 1999-4915 ; 1999-4915
    ISSN (online) 1999-4915
    ISSN 1999-4915
    DOI 10.3390/v16010074
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  4. Article: [Identification of the impurity in auramine O by high performance liquid chromatography-ion trap-time of flight mass spectrometry and preparation of the auramine O reference standard by preparative high performance liquid chromatography].

    Che, Fenfang / Lu, Yanzhen / Xi, Xingjun / Lan, Tao / Wei, Yun

    Se pu = Chinese journal of chromatography

    2019  Volume 37, Issue 3, Page(s) 299–304

    Abstract: A novel and effective method was established for the qualitative analysis of impurities in auramine O samples of illegal food additives using high performance liquid chromatography-ion trap-time of flight mass spectrometry (HPLC-IT-TOF-MS). An impurity ... ...

    Abstract A novel and effective method was established for the qualitative analysis of impurities in auramine O samples of illegal food additives using high performance liquid chromatography-ion trap-time of flight mass spectrometry (HPLC-IT-TOF-MS). An impurity was identified in the auramine O sample using the optimized HPLC-IT-TOF-MS method. According to the exact mass of each fragment ion measured by multistage MS, the structure of the impurity was determined to be that of 4-(imino (4-(methylamino) phenyl) methyl)-
    MeSH term(s) Benzophenoneidum/analysis ; Chromatography, High Pressure Liquid ; Drug Contamination ; Food Additives/analysis ; Food Contamination/analysis ; Mass Spectrometry
    Chemical Substances Food Additives ; Benzophenoneidum (2465-27-2)
    Language Chinese
    Publishing date 2019-03-22
    Publishing country China
    Document type Journal Article
    ISSN 1000-8713
    ISSN 1000-8713
    DOI 10.3724/SP.J.1123.2018.10025
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  5. Article: Comprehensive evaluation of effective polyphenols in apple leaves and their combinatory antioxidant and neuroprotective activities

    Lu, Yanzhen / Yang Du / Xiaoyan Qin / Huantong Wu / Yanjun Huang / Yong Cheng / Yun Wei

    Industrial crops and products. 2019 Mar., v. 129

    2019  

    Abstract: Apple (Malus pumila Mill.) leaves contain many antioxidant polyphenols that have received considerable attention due to their potential prevention of various chronic human diseases. The present study aimed to provide a comprehensive evaluation of ... ...

    Abstract Apple (Malus pumila Mill.) leaves contain many antioxidant polyphenols that have received considerable attention due to their potential prevention of various chronic human diseases. The present study aimed to provide a comprehensive evaluation of polyphenols in apple leaves. The petroleum ether, ethyl acetate, and 75% ethanol extracts of apple leaves were assessed for their total phenolic and flavonoid contents and antioxidant activities. Among the three extracts, the 75% ethanol extract contained the highest phenolic (56.74 mg/g) and flavonoid (37.56 mg/g) contents and had the highest antioxidant activity (EC50 value 50.96 mg/L) by 2, 2-diphenyl-1-picrylhydrazyl assay. According to high performance liquid chromatography profiling and high-speed countercurrent chromatography separation, the 75% ethanol extract contained five major polyphenols phloridzin (P, 66.1 mg/g), isoquercitrin (IQ, 8.4 mg/g), quercetin 3-O-xyloside (9.5 mg/g), quercetin 3-O-arabinoside (10.7 mg/g), and quercetin 3-O-rhamnoside (28.5 mg/g). Additionally, the five separated polyphenols were investigated for their antioxidant activities and protective effects against hydrogen peroxide-induced oxidative stress in rat hippocampal neurons in vitro. The results showed that all the five polyphenols had antioxidant activities like the synthetic antioxidants butylated hydroxytoluene (BHT) and tert-butylhydroquinone (TBHQ) and IQ had the highest antioxidant activity (EC50 value 2.92 mg/L) among them. The IQ combination with P or with BHT had significant synergism in antioxidant activity at the ratios from 25:1 to 1:25 (w/w) and the strongest synergism at the ratio of 1:1. The IQ showed significant neuroprotective effect at the concentrations of 0.5–1.0 mg/L, while P and BHT had no neuroprotective effect and TBHQ had neurotoxic effect at high concentrations (0.5–5.0 mg/L). These results indicated that apple leaves could be exploited as a cheap and abundant resource of antioxidants and their utilization could be very attractive for pharmaceutical, food, and cosmetic industries.
    Keywords Malus pumila ; antioxidant activity ; butylated hydroxytoluene ; countercurrent chromatography ; ethanol ; ethyl acetate ; high performance liquid chromatography ; human diseases ; hydrogen peroxide ; hydroquinone ; industry ; isoquercitrin ; leaves ; median effective concentration ; neurons ; neuroprotective effect ; neurotoxicity ; oxidative stress ; petroleum ; phloridzin ; polyphenols ; quercetin ; quinones ; rats ; synergism
    Language English
    Dates of publication 2019-03
    Size p. 242-252.
    Publishing place Elsevier B.V.
    Document type Article
    ZDB-ID 1132158-1
    ISSN 1872-633X ; 0926-6690
    ISSN (online) 1872-633X
    ISSN 0926-6690
    DOI 10.1016/j.indcrop.2018.12.013
    Database NAL-Catalogue (AGRICOLA)

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  6. Article: Isolation and purification of alkaloids from the fruits of Macleaya cordata by ionic‐liquid‐modified high‐speed counter‐current chromatography

    Liu, Yuanyuan / Wang, Wenjuan / Che, Fenfang / Lu, Yanzhen / Li, Aoxin / Li, Hao / Liu, Jiangang / Wei, Yun

    Journal of separation science. 2020 June, v. 43, no. 12

    2020  

    Abstract: Macleaya cordata (Willd) R. Br. is a medicinal plant. The most important bioactive compounds of M. cordata are alkaloids that have many biological activities including antifungal, anti‐inflammatory, and antitumor. In this study, an ionic‐liquid‐modified ... ...

    Abstract Macleaya cordata (Willd) R. Br. is a medicinal plant. The most important bioactive compounds of M. cordata are alkaloids that have many biological activities including antifungal, anti‐inflammatory, and antitumor. In this study, an ionic‐liquid‐modified high‐speed counter‐current chromatography method was established to obtain alkaloids from the fruits of M. cordata. The conditions of ionic‐liquid‐modified high‐speed counter‐current chromatography, including solvent systems, the content of ionic liquid (1‐butyl‐3‐methylimidazolium tetrafluoroborate [C₄mim][BF₄]), and the posttreatment of the ionic liquid, were investigated. Five alkaloids protopine, allocryptopine, sanguinarine, 8‐O‐demethylchelerythrine, and chelerythrine were separated from the extract of the fruits using a high speed counter‐current chromatography with two‐phase solvent system composed of dichloromethane/methanol/0.3 mol/L hydrochloric acid aqueous solution/[C₄mim][BF₄] (4:2:2:0.015, v/v). Their purities were 96.33, 95.56, 97.94, 96.22, and 97.90%, respectively. The results indicated that a small amount of ionic liquids as modifier of the two‐phase solvent system could shorten the separation time and improve the separation efficiency of the alkaloids from the fruits. The ionic‐liquid‐modified high‐speed counter‐current chromatography would provide a feasible way for highly effective separation of alkaloids from natural products.
    Keywords Macleaya cordata ; countercurrent chromatography ; hydrochloric acid ; ionic liquids ; medicinal plants ; methylene chloride ; sanguinarine ; separation
    Language English
    Dates of publication 2020-06
    Size p. 2459-2466.
    Publishing place John Wiley & Sons, Ltd
    Document type Article
    Note NAL-AP-2-clean ; JOURNAL ARTICLE
    ZDB-ID 2047990-6
    ISSN 1615-9314 ; 1615-9306
    ISSN (online) 1615-9314
    ISSN 1615-9306
    DOI 10.1002/jssc.201901242
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  7. Article: Isolation of Four Major Compounds of γ-Oryzanol from Rice Bran Oil by Ionic Liquids Modified High-Speed Countercurrent Chromatography and Antimicrobial Activity and Neuroprotective Effect of Cycloartenyl Ferulate In Vitro

    Liu, Cong / Xi, Xingjun / Liu, Yuanyuan / Lu, Yanzhen / Che, Fenfang / Gu, Yanxiang / Yu, Yingchun / Li, Hao / Liu, Jiangang / Wei, Yun

    Chromatographia. 2021 July, v. 84, no. 7

    2021  

    Abstract: This study presents an effective high-speed countercurrent chromatography method of two-phase solvent system combined with ionic liquids for the isolation and purification of four major compounds of γ-oryzanol from rice bran oil. The conditions of high- ... ...

    Abstract This study presents an effective high-speed countercurrent chromatography method of two-phase solvent system combined with ionic liquids for the isolation and purification of four major compounds of γ-oryzanol from rice bran oil. The conditions of high-speed countercurrent chromatography, including solvent systems and the content of ionic liquids, were optimized to improve separation efficiency. The optimal solvent system was n-hexane–dichloromethane–acetonitrile–[C₄mim][PF₆] at a volume ratio of (10:1:10:0.15, v/v). Adding a small amount of ionic liquids significantly improved the separation efficiency. Four compounds of γ-oryzanol, cycloartenyl ferulate, 24-methylene cycloartanyl ferulate, campesteryl ferulate, and sitosteryl ferulate were successfully purified in one run from rice bran oil with the purities of 95.25%, 92.48%, 92.47%, and 93.43%, respectively. The result of bioassay showed that rice bran oil and separated individual cycloartenyl ferulate could significantly inhibit mycelium growth of crop diseases Rhizoctonia solani and Fusarium graminerum, the bioactivity of cycloartenyl was higher than that of the rice bran oil. The cellular antioxidant activity experimental result indicted that cycloartenyl ferulate could alleviate H₂O₂-induced oxidative stress.
    Keywords Fusarium ; Thanatephorus cucumeris ; antimicrobial properties ; antioxidant activity ; bioassays ; countercurrent chromatography ; mycelium ; neuroprotective effect ; oxidative stress ; rice bran oil
    Language English
    Dates of publication 2021-07
    Size p. 635-644.
    Publishing place Springer Berlin Heidelberg
    Document type Article
    ZDB-ID 80097-1
    ISSN 0009-5893
    ISSN 0009-5893
    DOI 10.1007/s10337-021-04044-9
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  8. Article ; Online: Isolation of four phenolic compounds from Mangifera indica L. flowers by using normal phase combined with elution extrusion two-step high speed countercurrent chromatography.

    Shaheen, Nusrat / Lu, Yanzhen / Geng, Ping / Shao, Qian / Wei, Yun

    Journal of chromatography. B, Analytical technologies in the biomedical and life sciences

    2017  Volume 1046, Page(s) 211–217

    Abstract: Two-step high speed countercurrent chromatography method, following normal phase and elution-extrusion mode of operation by using selected solvent systems, was introduced for phenolic compounds separation. Phenolic compounds including gallic acid, ethyl ... ...

    Abstract Two-step high speed countercurrent chromatography method, following normal phase and elution-extrusion mode of operation by using selected solvent systems, was introduced for phenolic compounds separation. Phenolic compounds including gallic acid, ethyl gallate, ethyl digallate and ellagic acid were separated from the ethanol extract of mango (Mangifera indica L.) flowers for the first time. In the first step, gallic acid of 3.7mg and ethyl gallate of 3.9mg with the purities of 98.87% and 99.55%, respectively, were isolated by using hexane-ethylacetate-methanol-water (4:6:4:6, v/v) in normal phase high speed countercurrent chromatography from 200mg of crude extract, while ethyl digallate and ellagic acid were collected in the form of mixture fraction. In the second step, further purification of the mixture was carried out with the help of another selected solvent system of dichloromethane-methanol-water (4:3:2, v/v) following elusion-extrusion mode of operation. Ethyl digallate of 3.8mg and ellagic acid of 5.7mg were separated well with high purities of 98.68% and 99.71%, respectively. The separated phenolic compounds were identified and confirmed by HPLC, UPLC-QTOF/ESI-MS,
    MeSH term(s) Chromatography, High Pressure Liquid ; Countercurrent Distribution/methods ; Flowers/chemistry ; Mangifera/chemistry ; Nuclear Magnetic Resonance, Biomolecular ; Phenols/analysis ; Phenols/chemistry ; Phenols/isolation & purification ; Plant Extracts/chemistry ; Spectrometry, Mass, Electrospray Ionization
    Chemical Substances Phenols ; Plant Extracts
    Language English
    Publishing date 2017-03-01
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 1180823-8
    ISSN 1873-376X ; 0378-4347 ; 1570-0232 ; 1387-2273
    ISSN (online) 1873-376X
    ISSN 0378-4347 ; 1570-0232 ; 1387-2273
    DOI 10.1016/j.jchromb.2017.01.018
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  9. Article ; Online: An automatic on-line 2,2-diphenyl-1-picrylhydrazyl-high performance liquid chromatography method for high-throughput screening of antioxidants from natural products.

    Lu, Yanzhen / Wu, Nan / Fang, Yingtong / Shaheen, Nusrat / Wei, Yun

    Journal of chromatography. A

    2017  Volume 1521, Page(s) 100–109

    Abstract: Many natural products are rich in antioxidants which play an important role in preventing or postponing a variety of diseases, such as cardiovascular and inflammatory disease, diabetes as well as breast cancer. In this paper, an automatic on-line 2,2- ... ...

    Abstract Many natural products are rich in antioxidants which play an important role in preventing or postponing a variety of diseases, such as cardiovascular and inflammatory disease, diabetes as well as breast cancer. In this paper, an automatic on-line 2,2-diphenyl-1-picrylhydrazyl-high performance liquid chromatography (DPPH-HPLC) method was established for antioxidants screening with nine standards including organic acids (4-hydroxyphenylacetic acid, p-coumaric acid, ferulic acid, and benzoic acid), alkaloids (coptisine and berberine), and flavonoids (quercitrin, astragalin, and quercetin). The optimal concentration of DPPH was determined, and six potential antioxidants including 4-hydroxyphenylacetic acid, p-coumaric acid, ferulic acid, quercitrin, astragalin, and quercetin, and three non-antioxidants including benzoic acid, coptisine, and berberine, were successfully screened out and validated by conventional DPPH radical scavenging activity assay. The established method has been applied to the crude samples of Saccharum officinarum rinds, Coptis chinensis powders, and Malus pumila leaves, consecutively. Two potential antioxidant compounds from Saccharum officinarum rinds and five potential antioxidant compounds from Malus pumila eaves were rapidly screened out. Then these seven potential antioxidants were purified and identified as p-coumaric acid, ferulic acid, phloridzin, isoquercitrin, quercetin-3-xyloside, quercetin-3-arabinoside, and quercetin-3-rhamnoside using countercurrent chromatography combined with mass spectrometry and their antioxidant activities were further evaluated by conventional DPPH radical scavenging assay. The activity result was in accordance with that of the established method. This established method is cheap and automatic, and could be used as an efficient tool for high-throughput antioxidant screening from various complex natural products.
    Language English
    Publishing date 2017-10-27
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 1171488-8
    ISSN 1873-3778 ; 0021-9673
    ISSN (online) 1873-3778
    ISSN 0021-9673
    DOI 10.1016/j.chroma.2017.09.030
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  10. Article ; Online: Isolation and purification of alkaloids from the fruits of Macleaya cordata by ionic-liquid-modified high-speed counter-current chromatography.

    Liu, Yuanyuan / Wang, Wenjuan / Che, Fenfang / Lu, Yanzhen / Li, Aoxin / Li, Hao / Liu, Jiangang / Wei, Yun

    Journal of separation science

    2020  Volume 43, Issue 12, Page(s) 2459–2466

    Abstract: Macleaya cordata (Willd) R. Br. is a medicinal plant. The most important bioactive compounds of M. cordata are alkaloids that have many biological activities including antifungal, anti-inflammatory, and antitumor. In this study, an ionic-liquid-modified ... ...

    Abstract Macleaya cordata (Willd) R. Br. is a medicinal plant. The most important bioactive compounds of M. cordata are alkaloids that have many biological activities including antifungal, anti-inflammatory, and antitumor. In this study, an ionic-liquid-modified high-speed counter-current chromatography method was established to obtain alkaloids from the fruits of M. cordata. The conditions of ionic-liquid-modified high-speed counter-current chromatography, including solvent systems, the content of ionic liquid (1-butyl-3-methylimidazolium tetrafluoroborate [C
    MeSH term(s) Alkaloids/chemistry ; Alkaloids/isolation & purification ; Countercurrent Distribution ; Fruit/chemistry ; Ionic Liquids/chemistry ; Papaveraceae/chemistry
    Chemical Substances Alkaloids ; Ionic Liquids
    Language English
    Publishing date 2020-04-13
    Publishing country Germany
    Document type Journal Article
    ZDB-ID 2047990-6
    ISSN 1615-9314 ; 1615-9306
    ISSN (online) 1615-9314
    ISSN 1615-9306
    DOI 10.1002/jssc.201901242
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