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  1. Article ; Online: Which older Brazilians will accept a COVID-19 vaccine? Cross-sectional evidence from the Brazilian Longitudinal Study of Aging (ELSI-Brazil)

    James Macinko / Juliana Vaz de Melo Mambrini / Brayan V Seixas / M Fernanda Lima-Costa

    BMJ Open, Vol 11, Iss

    2021  Volume 11

    Keywords Medicine ; R
    Language English
    Publishing date 2021-11-01T00:00:00Z
    Publisher BMJ Publishing Group
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  2. Article ; Online: Genomic African and Native American Ancestry and Chagas Disease

    M Fernanda Lima-Costa / James Macinko / Juliana Vaz de Mello Mambrini / Sérgio Viana Peixoto / Alexandre Costa Pereira / Eduardo Tarazona-Santos / Antonio Luiz Pinho Ribeiro

    PLoS Neglected Tropical Diseases, Vol 10, Iss 5, p e

    The Bambui (Brazil) Epigen Cohort Study of Aging.

    2016  Volume 0004724

    Abstract: The influence of genetic ancestry on Trypanosoma cruzi infection and Chagas disease outcomes is unknown.We used 370,539 Single Nucleotide Polymorphisms (SNPs) to examine the association between individual proportions of African, European and Native ... ...

    Abstract The influence of genetic ancestry on Trypanosoma cruzi infection and Chagas disease outcomes is unknown.We used 370,539 Single Nucleotide Polymorphisms (SNPs) to examine the association between individual proportions of African, European and Native American genomic ancestry with T. cruzi infection and related outcomes in 1,341 participants (aged ≥ 60 years) of the Bambui (Brazil) population-based cohort study of aging. Potential confounding variables included sociodemographic characteristics and an array of health measures. The prevalence of T. cruzi infection was 37.5% and 56.3% of those infected had a major ECG abnormality. Baseline T. cruzi infection was correlated with higher levels of African and Native American ancestry, which in turn were strongly associated with poor socioeconomic circumstances. Cardiomyopathy in infected persons was not significantly associated with African or Native American ancestry levels. Infected persons with a major ECG abnormality were at increased risk of 15-year mortality relative to their counterparts with no such abnormalities (adjusted hazard ratio = 1.80; 95% 1.41, 2.32). African and Native American ancestry levels had no significant effect modifying this association.Our findings indicate that African and Native American ancestry have no influence on the presence of major ECG abnormalities and had no influence on the ability of an ECG abnormality to predict mortality in older people infected with T. cruzi. In contrast, our results revealed a strong and independent association between prevalent T. cruzi infection and higher levels of African and Native American ancestry. Whether this association is a consequence of genetic background or differential exposure to infection remains to be determined.
    Keywords Arctic medicine. Tropical medicine ; RC955-962 ; Public aspects of medicine ; RA1-1270
    Subject code 333
    Language English
    Publishing date 2016-05-01T00:00:00Z
    Publisher Public Library of Science (PLoS)
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  3. Article ; Online: Genome-wide burden and association analyses implicate copy number variations in asthma risk among children and young adults from Latin America

    Pablo Oliveira / Gustavo N. O. Costa / Andresa K. A. Damasceno / Fernando P. Hartwig / George C. G. Barbosa / Camila A. Figueiredo / Rita de C. Ribeiro-Silva / Alexandre Pereira / M. Fernanda Lima-Costa / Fernanda S. Kehdy / Eduardo Tarazona-Santos / Bernardo L. Horta / Laura C. Rodrigues / Rosemeire L. Fiaccone / Maurício L. Barreto

    Scientific Reports, Vol 8, Iss 1, Pp 1-

    2018  Volume 10

    Abstract: Abstract The genetic architecture of asthma was relatively well explored. However, some work remains in the field to improve our understanding on asthma genetics, especially in non-Caucasian populations and with regards to commonly neglected genetic ... ...

    Abstract Abstract The genetic architecture of asthma was relatively well explored. However, some work remains in the field to improve our understanding on asthma genetics, especially in non-Caucasian populations and with regards to commonly neglected genetic variants, such as Copy Number Variations (CNVs). In the present study, we investigated the contribution of CNVs on asthma risk among Latin Americans. CNVs were inferred from SNP genotyping data. Genome wide burden and association analyses were conducted to evaluate the impact of CNVs on asthma outcome. We found no significant difference in the numbers of CNVs between asthmatics and non-asthmatics. Nevertheless, we found that CNVs are larger in patients then in healthy controls and that CNVs from cases intersect significantly more genes and regulatory elements. We also found that a deletion at 6p22.1 is associated with asthma symptoms in children from Salvador (Brazil) and in young adults from Pelotas (Brazil). To support our results, we conducted an in silico functional analysis and found that this deletion spans several regulatory elements, including two promoter elements active in lung cells. In conclusion, we found robust evidence that CNVs could contribute for asthma susceptibility. These results uncover a new perspective on the influence of genetic factors modulating asthma risk.
    Keywords Asthma Risk ; Pelotas ; Salvadoran ; Asthma Outcomes ; Asthma Symptoms ; Medicine ; R ; Science ; Q
    Subject code 610
    Language English
    Publishing date 2018-09-01T00:00:00Z
    Publisher Nature Portfolio
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  4. Article ; Online: Genomic Ancestry, Self-Rated Health and Its Association with Mortality in an Admixed Population

    M Fernanda Lima-Costa / James Macinko / Juliana Vaz de Melo Mambrini / Cibele C Cesar / Sérgio V Peixoto / Wagner C S Magalhães / Bernardo L Horta / Mauricio Barreto / Erico Castro-Costa / Josélia O A Firmo / Fernando A Proietti / Thiago Peixoto Leal / Maira R Rodrigues / Alexandre Pereira / Eduardo Tarazona-Santos

    PLoS ONE, Vol 10, Iss 12, p e

    10 Year Follow-Up of the Bambui-Epigen (Brazil) Cohort Study of Ageing.

    2015  Volume 0144456

    Abstract: Self-rated health (SRH) has strong predictive value for mortality in different contexts and cultures, but there is inconsistent evidence on ethnoracial disparities in SRH in Latin America, possibly due to the complexity surrounding ethnoracial self- ... ...

    Abstract Self-rated health (SRH) has strong predictive value for mortality in different contexts and cultures, but there is inconsistent evidence on ethnoracial disparities in SRH in Latin America, possibly due to the complexity surrounding ethnoracial self-classification.We used 370,539 Single Nucleotide Polymorphisms (SNPs) to examine the association between individual genomic proportions of African, European and Native American ancestry, and ethnoracial self-classification, with baseline and 10-year SRH trajectories in 1,311 community dwelling older Brazilians. We also examined whether genomic ancestry and ethnoracial self-classification affect the predictive value of SRH for subsequent mortality.European ancestry predominated among participants, followed by African and Native American (median = 84.0%, 9.6% and 5.3%, respectively); the prevalence of Non-White (Mixed and Black) was 39.8%. Persons at higher levels of African and Native American genomic ancestry, and those self-identified as Non-White, were more likely to report poor health than other groups, even after controlling for socioeconomic conditions and an array of self-reported and objective physical health measures. Increased risks for mortality associated with worse SRH trajectories were strong and remarkably similar (hazard ratio ~3) across all genomic ancestry and ethno-racial groups.Our results demonstrated for the first time that higher levels of African and Native American genomic ancestry--and the inverse for European ancestry--were strongly correlated with worse SRH in a Latin American admixed population. Both genomic ancestry and ethnoracial self-classification did not modify the strong association between baseline SRH or SRH trajectory, and subsequent mortality.
    Keywords Medicine ; R ; Science ; Q
    Subject code 333
    Language English
    Publishing date 2015-01-01T00:00:00Z
    Publisher Public Library of Science (PLoS)
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  5. Article ; Online: Age-related cognitive decline and associations with sex, education and apolipoprotein E genotype across ethnocultural groups and geographic regions

    Darren M Lipnicki / John D Crawford / Rajib Dutta / Anbupalam Thalamuthu / Nicole A Kochan / Gavin Andrews / M Fernanda Lima-Costa / Erico Castro-Costa / Carol Brayne / Fiona E Matthews / Blossom C M Stephan / Richard B Lipton / Mindy J Katz / Karen Ritchie / Jacqueline Scali / Marie-Laure Ancelin / Nikolaos Scarmeas / Mary Yannakoulia / Efthimios Dardiotis /
    Linda C W Lam / Candy H Y Wong / Ada W T Fung / Antonio Guaita / Roberta Vaccaro / Annalisa Davin / Ki Woong Kim / Ji Won Han / Tae Hui Kim / Kaarin J Anstey / Nicolas Cherbuin / Peter Butterworth / Marcia Scazufca / Shuzo Kumagai / Sanmei Chen / Kenji Narazaki / Tze Pin Ng / Qi Gao / Simone Reppermund / Henry Brodaty / Antonio Lobo / Raúl Lopez-Anton / Javier Santabárbara / Perminder S Sachdev / Cohort Studies of Memory in an International Consortium (COSMIC)

    PLoS Medicine, Vol 14, Iss 3, p e

    a collaborative cohort study.

    2017  Volume 1002261

    Abstract: Background The prevalence of dementia varies around the world, potentially contributed to by international differences in rates of age-related cognitive decline. Our primary goal was to investigate how rates of age-related decline in cognitive test ... ...

    Abstract Background The prevalence of dementia varies around the world, potentially contributed to by international differences in rates of age-related cognitive decline. Our primary goal was to investigate how rates of age-related decline in cognitive test performance varied among international cohort studies of cognitive aging. We also determined the extent to which sex, educational attainment, and apolipoprotein E ε4 allele (APOE*4) carrier status were associated with decline. Methods and findings We harmonized longitudinal data for 14 cohorts from 12 countries (Australia, Brazil, France, Greece, Hong Kong, Italy, Japan, Singapore, Spain, South Korea, United Kingdom, United States), for a total of 42,170 individuals aged 54-105 y (42% male), including 3.3% with dementia at baseline. The studies began between 1989 and 2011, with all but three ongoing, and each had 2-16 assessment waves (median = 3) and a follow-up duration of 2-15 y. We analyzed standardized Mini-Mental State Examination (MMSE) and memory, processing speed, language, and executive functioning test scores using linear mixed models, adjusted for sex and education, and meta-analytic techniques. Performance on all cognitive measures declined with age, with the most rapid rate of change pooled across cohorts a moderate -0.26 standard deviations per decade (SD/decade) (95% confidence interval [CI] [-0.35, -0.16], p < 0.001) for processing speed. Rates of decline accelerated slightly with age, with executive functioning showing the largest additional rate of decline with every further decade of age (-0.07 SD/decade, 95% CI [-0.10, -0.03], p = 0.002). There was a considerable degree of heterogeneity in the associations across cohorts, including a slightly faster decline (p = 0.021) on the MMSE for Asians (-0.20 SD/decade, 95% CI [-0.28, -0.12], p < 0.001) than for whites (-0.09 SD/decade, 95% CI [-0.16, -0.02], p = 0.009). Males declined on the MMSE at a slightly slower rate than females (difference = 0.023 SD/decade, 95% CI [0.011, 0.035], p < ...
    Keywords Medicine ; R
    Subject code 150
    Language English
    Publishing date 2017-03-01T00:00:00Z
    Publisher Public Library of Science (PLoS)
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  6. Article: Origin and dynamics of admixture in Brazilians and its effect on the pattern of deleterious mutations

    Kehdy, Fernanda S. G / Mateus H. Gouveia / Moara Machado / Wagner C. S. Magalhães / Andrea R. Horimoto / Bernardo L. Horta / Rennan G. Moreira / Thiago P. Leal / Marilia O. Scliar / Giordano B. Soares-Souza / Fernanda Rodrigues-Soares / Gilderlanio S. Araãújo / Roxana Zamudio / Hanaisa P. Sant Anna / Hadassa C. Santos / Nubia E. Duarte / Rosemeire L. Fiaccone / Camila A. Figueiredo / Thiago M. Silva /
    Gustavo N. O. Costa / Sandra Beleza / Douglas E. Berg / Lilia Cabrera / Guilherme Debortoli / Denise Duarte / Silvia Ghirotto / Robert H. Gilman / Vanessa F. Goncalves / Andrea R. Marrero / Yara C. Muniz / Hansi Weissensteiner / Meredith Yeager / Laura C. Rodrigues / Mauricio L. Barreto / M. Fernanda Lima-Costa / Alexandre C. Pereira / Maãúíra R. Rodrigues / Eduardo Tarazona-Santos

    Proceedings of the National Academy of Sciences of the United States of America. 2015 July 14, v. 112, no. 28

    2015  

    Abstract: The EPIGEN Brazil Project is the largest Latin-American initiative to study the genomic diversity of admixed populations and its effect on phenotypes. We studied 6,487 Brazilians from three population-based cohorts with different geographic and ... ...

    Abstract The EPIGEN Brazil Project is the largest Latin-American initiative to study the genomic diversity of admixed populations and its effect on phenotypes. We studied 6,487 Brazilians from three population-based cohorts with different geographic and demographic backgrounds. We identified ancestry components of these populations at a previously unmatched geographic resolution. We broadened our understanding of the African diaspora, the principal destination of which was Brazil, by revealing an African ancestry component that likely derives from the slave trade from Bantu/eastern African populations. In the context of the current debate about how the pattern of deleterious mutations varies between Africans and Europeans, we use whole-genome data to show that continental admixture is the main and complex determinant of the amount of deleterious genotypes in admixed individuals.

    While South Americans are underrepresented in human genomic diversity studies, Brazil has been a classical model for population genetics studies on admixture. We present the results of the EPIGEN Brazil Initiative, the most comprehensive up-to-date genomic analysis of any Latin-American population. A population-based genome-wide analysis of 6,487 individuals was performed in the context of worldwide genomic diversity to elucidate how ancestry, kinship, and inbreeding interact in three populations with different histories from the Northeast (African ancestry: 50%), Southeast, and South (both with European ancestry >70%) of Brazil. We showed that ancestry-positive assortative mating permeated Brazilian history. We traced European ancestry in the Southeast/South to a wider European/Middle Eastern region with respect to the Northeast, where ancestry seems restricted to Iberia. By developing an approximate Bayesian computation framework, we infer more recent European immigration to the Southeast/South than to the Northeast. Also, the observed low Native-American ancestry (6–8%) was mostly introduced in different regions of Brazil soon after the European Conquest. We broadened our understanding of the African diaspora, the major destination of which was Brazil, by revealing that Brazilians display two within-Africa ancestry components: one associated with non-Bantu/western Africans (more evident in the Northeast and African Americans) and one associated with Bantu/eastern Africans (more present in the Southeast/South). Furthermore, the whole-genome analysis of 30 individuals (42-fold deep coverage) shows that continental admixture rather than local post-Columbian history is the main and complex determinant of the individual amount of deleterious genotypes.
    Keywords Africans ; Europeans ; ancestry ; genetic variation ; genomics ; genotype ; mutation ; phenotype ; trade ; Latin America ; population genetics ; Salvador SCAALA ; Bambuãúíêóãããóãíáêãêúúóéáéóíàóãúáãééêóóãêãêúúãóãíãôãí Cohort Study of Ageing ; Pelotas Birth Cohort Study ; Brazil
    Language English
    Dates of publication 2015-0714
    Size p. 8696-8701.
    Publishing place National Academy of Sciences
    Document type Article
    ZDB-ID 209104-5
    ISSN 1091-6490 ; 0027-8424
    ISSN (online) 1091-6490
    ISSN 0027-8424
    DOI 10.1073/pnas.1504447112
    Database NAL-Catalogue (AGRICOLA)

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  7. Article: Origin and dynamics of admixture in Brazilians and its effect on the pattern of deleterious mutations

    Kehdy, Fernanda S. G. / Mateus H. Gouveia / Moara Machado / Wagner C. S. Magalhães / Andrea R. Horimoto / Bernardo L. Horta / Rennan G. Moreira / Thiago P. Leal / Marilia O. Scliar / Giordano B. Soares-Souza / Fernanda Rodrigues-Soares / Gilderlanio S. Araãújo / Roxana Zamudio / Hanaisa P. Sant Anna / Hadassa C. Santos / Nubia E. Duarte / Rosemeire L. Fiaccone / Camila A. Figueiredo / Thiago M. Silva /
    Gustavo N. O. Costa / Sandra Beleza / Douglas E. Berg / Lilia Cabrera / Guilherme Debortoli / Denise Duarte / Silvia Ghirotto / Robert H. Gilman / Vanessa F. Goncalves / Andrea R. Marrero / Yara C. Muniz / Hansi Weissensteiner / Meredith Yeager / Laura C. Rodrigues / Mauricio L. Barreto / M. Fernanda Lima-Costa / Alexandre C. Pereira / Maãúíra R. Rodrigues / Eduardo Tarazona-Santos

    Proceedings of the National Academy of Sciences of the United States of America

    Volume v. 112,, Issue no. 2

    Abstract: The EPIGEN Brazil Project is the largest Latin-American initiative to study the genomic diversity of admixed populations and its effect on phenotypes. We studied 6,487 Brazilians from three population-based cohorts with different geographic and ... ...

    Abstract The EPIGEN Brazil Project is the largest Latin-American initiative to study the genomic diversity of admixed populations and its effect on phenotypes. We studied 6,487 Brazilians from three population-based cohorts with different geographic and demographic backgrounds. We identified ancestry components of these populations at a previously unmatched geographic resolution. We broadened our understanding of the African diaspora, the principal destination of which was Brazil, by revealing an African ancestry component that likely derives from the slave trade from Bantu/eastern African populations. In the context of the current debate about how the pattern of deleterious mutations varies between Africans and Europeans, we use whole-genome data to show that continental admixture is the main and complex determinant of the amount of deleterious genotypes in admixed individuals.
    Language English
    Document type Article
    ISSN 0027-8424
    Database AGRIS - International Information System for the Agricultural Sciences and Technology

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