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  1. Article: Dengue virus non-structural Protein-1 expression and associated risk factors among febrile Patients attending University of Abuja Teaching Hospital, Nigeria

    Nasir, Idris Abdullahi / Abubakar Shehu Haruna / Amos Dangana / Marycelin Baba / Olubunmi Olajide Agbede

    Virus research. 2017 Feb. 15, v. 230

    2017  

    Abstract: Dengue is a mosquito-borne and neglected tropical viral disease that has been reported to be hyper-endemic in Nigeria. However, this is the first dengue study in Abuja.This hospital-based cross-sectional study investigated the prevalence of Dengue virus ( ...

    Abstract Dengue is a mosquito-borne and neglected tropical viral disease that has been reported to be hyper-endemic in Nigeria. However, this is the first dengue study in Abuja.This hospital-based cross-sectional study investigated the prevalence of Dengue virus (DENV) non-structural protein-1 (NS1) antigenaemia, anti-Dengue virus IgG and their associated risk factors among febrile patients attending the University of Abuja Teaching Hospital (UATH), Nigeria.From May to August 2016, blood samples were individually collected from 171 consented participants. These samples were analyzed using DENV NS1 and anti-DENV IgG Enzyme Linked Immunosorbent Assay (ELISA) kits. Well-structured questionnaires was used to collect sociodemographic variables of participants.Out of the 171 participants, the prevalence of Dengue virus NS1 antigenaemia and IgG seropositivity were 8.8% and 43.3%, respectively. Three (1.8%) of the patients were NS1 (+) IgG (−), 12 (7.0%) had NS1 (+) IgG (+), 62 (36.3%) were NS1 (−) IgG (+), while 97 (56.7%) of the remaining patients were NS1 (−) IgG (−). There was statistical association between DENV NS1 antigenaemia with age of patients (p=0.034), residence in proximity to waste dumpsites (p<0.0001) but not with occupation of patients (p=0.166), use of indoor insecticide sprays (p=0.4910) and presence of household artificial water containers (p=0.3650). There was statistical association between the prevalence of anti-Dengue virus IgG with occupation (p=0.0034) and education level of patients (p<0.001). However, there was no statistical association between the prevalence of anti-Dengue virus IgG with gender (p=0.4060) and residential area of patients (p=0.3896).Findings from this study revealed that DENV infection is one of the etiological agents of acute febrile illnesses in Abuja. It’s recommended that Dengue testing be considered during differential diagnosis of febrile patients.
    Keywords blood sampling ; containers ; cross-sectional studies ; dengue ; Dengue virus ; educational status ; enzyme-linked immunosorbent assay ; etiological agents ; gender ; hospitals ; immunoglobulin G ; insecticides ; patients ; questionnaires ; residential areas ; risk factors ; seroprevalence ; viruses ; Nigeria
    Language English
    Dates of publication 2017-0215
    Size p. 7-12.
    Publishing place Elsevier B.V.
    Document type Article
    ZDB-ID 605780-9
    ISSN 1872-7492 ; 0168-1702
    ISSN (online) 1872-7492
    ISSN 0168-1702
    DOI 10.1016/j.virusres.2016.12.011
    Database NAL-Catalogue (AGRICOLA)

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  2. Article ; Online: Towards an effective poliovirus laboratory containment strategy in Nigeria

    Johnson Muluh Ticha / Kolawole Olatunji Matthew / Abdullahi Walla Hamisu / Braka Fiona / Pascal Mkanda / Peter Nsubuga / Eberto Tesfaye / Kehinde Craig / Etsano Andrew / Obi Emelife / Faisal Shuaib / Akinkugbe Folasade / Johnson Adeniji / Usman Adamu / Mohammed Dallatu / Geoffrey Oyeyinka / Holly Brown / Nwakasik Nnamah / Joseph Okwori /
    Chukwuike Chinedu / Ibikunle Anibijuwon / Adewumi Olubusuyi / Donbraye Emmanuel / Murtala Bagana / Marycelin Baba / Gumede Nicksy / Richard Banda / Sisay G. Tegegne / Ajiboye Oyetunji / Ousmane Diop / O. Tomori / Rui G. Vaz

    BMC Public Health, Vol 18, Iss S4, Pp 9-

    2018  Volume 16

    Abstract: Abstract Background The Global Commission for the Certification of the Eradication of Poliomyelitis will declare the world free of wild poliovirus transmission when no wild virus has been found in at least 3 consecutive years, and all laboratories ... ...

    Abstract Abstract Background The Global Commission for the Certification of the Eradication of Poliomyelitis will declare the world free of wild poliovirus transmission when no wild virus has been found in at least 3 consecutive years, and all laboratories possessing wild poliovirus materials have adopted appropriate measures of containment. Nigeria has made progress towards poliomyelitis eradication with the latest reported WPV type 1 on 21 Aug 2016 after 2 years without any case. This milestone achievement was followed by an inventory of biomedical laboratories completed in November 2015 with the destruction of all identified infectious materials. This paper seeks to describe the poliovirus laboratory containment process in Nigeria on which an effective containment system has been built to minimize the risk of virus re-introduction into the population from the laboratories. Methods A national survey of all biomedical facilities, as well as an inventory of laboratories from various sectors, was conducted from June–November 2015. National Task Force (NTF) members and staff working on polio administered an on-site questionnaire in each facility. Laboratory personnel were sensitized with all un-needed materials destroyed by autoclaving and incineration. All stakeholders were also sensitized to continue the destruction of such materials as a requirement for phase one activities. Results A total of 20,638 biomedical facilities were surveyed with 9575 having laboratories. Thirty laboratories were found to contain poliovirus or potentially infectious materials. The 30 laboratories belonged to the ministries of health, education, defence and private organizations. Conclusions This article is amongst the first in Africa that relates poliovirus laboratory containment in the context of the tOPV-bOPV switch in alignment with the Global Action Plan III. All identified infectious materials were destroyed and personnel trained to continue to destroy subsequent materials, a process that needs meticulous monitoring to mitigate the risk of poliovirus re-introduction to the population.
    Keywords Laboratory ; Containment ; Poliovirus ; Biosafety ; Potentially infectious material ; Survey ; Public aspects of medicine ; RA1-1270
    Subject code 910
    Language English
    Publishing date 2018-12-01T00:00:00Z
    Publisher BMC
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  3. Article ; Online: A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa.

    Wilkinson, Eduan / Giovanetti, Marta / Tegally, Houriiyah / San, James E / Lessells, Richard / Cuadros, Diego / Martin, Darren P / Rasmussen, David A / Zekri, Abdel-Rahman N / Sangare, Abdoul K / Ouedraogo, Abdoul-Salam / Sesay, Abdul K / Priscilla, Abechi / Kemi, Adedotun-Sulaiman / Olubusuyi, Adewunmi M / Oluwapelumi, Adeyemi O O / Hammami, Adnène / Amuri, Adrienne A / Sayed, Ahmad /
    Ouma, Ahmed E O / Elargoubi, Aida / Ajayi, Nnennaya A / Victoria, Ajogbasile F / Kazeem, Akano / George, Akpede / Trotter, Alexander J / Yahaya, Ali A / Keita, Alpha K / Diallo, Amadou / Kone, Amadou / Souissi, Amal / Chtourou, Amel / Gutierrez, Ana V / Page, Andrew J / Vinze, Anika / Iranzadeh, Arash / Lambisia, Arnold / Ismail, Arshad / Rosemary, Audu / Sylverken, Augustina / Femi, Ayoade / Ibrahimi, Azeddine / Marycelin, Baba / Oderinde, Bamidele S / Bolajoko, Bankole / Dhaala, Beatrice / Herring, Belinda L / Njanpop-Lafourcade, Berthe-Marie / Kleinhans, Bronwyn / McInnis, Bronwyn / Tegomoh, Bryan / Brook, Cara / Pratt, Catherine B / Scheepers, Cathrine / Akoua-Koffi, Chantal G / Agoti, Charles N / Peyrefitte, Christophe / Daubenberger, Claudia / Morang'a, Collins M / Nokes, D James / Amoako, Daniel G / Bugembe, Daniel L / Park, Danny / Baker, David / Doolabh, Deelan / Ssemwanga, Deogratius / Tshiabuila, Derek / Bassirou, Diarra / Amuzu, Dominic S Y / Goedhals, Dominique / Omuoyo, Donwilliams O / Maruapula, Dorcas / Foster-Nyarko, Ebenezer / Lusamaki, Eddy K / Simulundu, Edgar / Ong'era, Edidah M / Ngabana, Edith N / Shumba, Edwin / El Fahime, Elmostafa / Lokilo, Emmanuel / Mukantwari, Enatha / Philomena, Eromon / Belarbi, Essia / Simon-Loriere, Etienne / Anoh, Etilé A / Leendertz, Fabian / Ajili, Faida / Enoch, Fakayode O / Wasfi, Fares / Abdelmoula, Fatma / Mosha, Fausta S / Takawira, Faustinos T / Derrar, Fawzi / Bouzid, Feriel / Onikepe, Folarin / Adeola, Fowotade / Muyembe, Francisca M / Tanser, Frank / Dratibi, Fred A / Mbunsu, Gabriel K / Thilliez, Gaetan / Kay, Gemma L / Githinji, George / van Zyl, Gert / Awandare, Gordon A / Schubert, Grit / Maphalala, Gugu P / Ranaivoson, Hafaliana C / Lemriss, Hajar / Anise, Happi / Abe, Haruka / Karray, Hela H / Nansumba, Hellen / Elgahzaly, Hesham A / Gumbo, Hlanai / Smeti, Ibtihel / Ayed, Ikhlas B / Odia, Ikponmwosa / Ben Boubaker, Ilhem Boutiba / Gaaloul, Imed / Gazy, Inbal / Mudau, Innocent / Ssewanyana, Isaac / Konstantinus, Iyaloo / Lekana-Douk, Jean B / Makangara, Jean-Claude C / Tamfum, Jean-Jacques M / Heraud, Jean-Michel / Shaffer, Jeffrey G / Giandhari, Jennifer / Li, Jingjing / Yasuda, Jiro / Mends, Joana Q / Kiconco, Jocelyn / Morobe, John M / Gyapong, John O / Okolie, Johnson C / Kayiwa, John T / Edwards, Johnathan A / Gyamfi, Jones / Farah, Jouali / Nakaseegu, Joweria / Ngoi, Joyce M / Namulondo, Joyce / Andeko, Julia C / Lutwama, Julius J / O'Grady, Justin / Siddle, Katherine / Adeyemi, Kayode T / Tumedi, Kefentse A / Said, Khadija M / Hae-Young, Kim / Duedu, Kwabena O / Belyamani, Lahcen / Fki-Berrajah, Lamia / Singh, Lavanya / Martins, Leonardo de O / Tyers, Lynn / Ramuth, Magalutcheemee / Mastouri, Maha / Aouni, Mahjoub / El Hefnawi, Mahmoud / Matsheka, Maitshwarelo I / Kebabonye, Malebogo / Diop, Mamadou / Turki, Manel / Paye, Marietou / Nyaga, Martin M / Mareka, Mathabo / Damaris, Matoke-Muhia / Mburu, Maureen W / Mpina, Maximillian / Nwando, Mba / Owusu, Michael / Wiley, Michael R / Youtchou, Mirabeau T / Ayekaba, Mitoha O / Abouelhoda, Mohamed / Seadawy, Mohamed G / Khalifa, Mohamed K / Sekhele, Mooko / Ouadghiri, Mouna / Diagne, Moussa M / Mwenda, Mulenga / Allam, Mushal / Phan, My V T / Abid, Nabil / Touil, Nadia / Rujeni, Nadine / Kharrat, Najla / Ismael, Nalia / Dia, Ndongo / Mabunda, Nedio / Hsiao, Nei-Yuan / Silochi, Nelson B / Nsenga, Ngoy / Gumede, Nicksy / Mulder, Nicola / Ndodo, Nnaemeka / Razanajatovo, Norosoa H / Iguosadolo, Nosamiefan / Judith, Oguzie / Kingsley, Ojide C / Sylvanus, Okogbenin / Peter, Okokhere / Femi, Oladiji / Idowu, Olawoye / Testimony, Olumade / Chukwuma, Omoruyi E / Ogah, Onwe E / Onwuamah, Chika K / Cyril, Oshomah / Faye, Ousmane / Tomori, Oyewale / Ondoa, Pascale / Combe, Patrice / Semanda, Patrick / Oluniyi, Paul E / Arnaldo, Paulo / Quashie, Peter K / Dussart, Philippe / Bester, Phillip A / Mbala, Placide K / Ayivor-Djanie, Reuben / Njouom, Richard / Phillips, Richard O / Gorman, Richmond / Kingsley, Robert A / Carr, Rosina A A / El Kabbaj, Saâd / Gargouri, Saba / Masmoudi, Saber / Sankhe, Safietou / Lawal, Salako B / Kassim, Samar / Trabelsi, Sameh / Metha, Samar / Kammoun, Sami / Lemriss, Sanaâ / Agwa, Sara H A / Calvignac-Spencer, Sébastien / Schaffner, Stephen F / Doumbia, Seydou / Mandanda, Sheila M / Aryeetey, Sherihane / Ahmed, Shymaa S / Elhamoumi, Siham / Andriamandimby, Soafy / Tope, Sobajo / Lekana-Douki, Sonia / Prosolek, Sophie / Ouangraoua, Soumeya / Mundeke, Steve A / Rudder, Steven / Panji, Sumir / Pillay, Sureshnee / Engelbrecht, Susan / Nabadda, Susan / Behillil, Sylvie / Budiaki, Sylvie L / van der Werf, Sylvie / Mashe, Tapfumanei / Aanniz, Tarik / Mohale, Thabo / Le-Viet, Thanh / Schindler, Tobias / Anyaneji, Ugochukwu J / Chinedu, Ugwu / Ramphal, Upasana / Jessica, Uwanibe / George, Uwem / Fonseca, Vagner / Enouf, Vincent / Gorova, Vivianne / Roshdy, Wael H / Ampofo, William K / Preiser, Wolfgang / Choga, Wonderful T / Bediako, Yaw / Naidoo, Yeshnee / Butera, Yvan / de Laurent, Zaydah R / Sall, Amadou A / Rebai, Ahmed / von Gottberg, Anne / Kouriba, Bourema / Williamson, Carolyn / Bridges, Daniel J / Chikwe, Ihekweazu / Bhiman, Jinal N / Mine, Madisa / Cotten, Matthew / Moyo, Sikhulile / Gaseitsiwe, Simani / Saasa, Ngonda / Sabeti, Pardis C / Kaleebu, Pontiano / Tebeje, Yenew K / Tessema, Sofonias K / Happi, Christian / Nkengasong, John / de Oliveira, Tulio

    Science (New York, N.Y.)

    2021  Volume 374, Issue 6566, Page(s) 423–431

    Abstract: The progression of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic in Africa has so far been heterogeneous, and the full impact is not yet well understood. In this study, we describe the genomic epidemiology using a dataset of ... ...

    Abstract The progression of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic in Africa has so far been heterogeneous, and the full impact is not yet well understood. In this study, we describe the genomic epidemiology using a dataset of 8746 genomes from 33 African countries and two overseas territories. We show that the epidemics in most countries were initiated by importations predominantly from Europe, which diminished after the early introduction of international travel restrictions. As the pandemic progressed, ongoing transmission in many countries and increasing mobility led to the emergence and spread within the continent of many variants of concern and interest, such as B.1.351, B.1.525, A.23.1, and C.1.1. Although distorted by low sampling numbers and blind spots, the findings highlight that Africa must not be left behind in the global pandemic response, otherwise it could become a source for new variants.
    MeSH term(s) Africa/epidemiology ; COVID-19/epidemiology ; COVID-19/transmission ; COVID-19/virology ; Epidemiological Monitoring ; Genetic Variation ; Genomics ; Humans ; Pandemics ; SARS-CoV-2/genetics ; SARS-CoV-2/isolation & purification
    Language English
    Publishing date 2021-09-09
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 128410-1
    ISSN 1095-9203 ; 0036-8075
    ISSN (online) 1095-9203
    ISSN 0036-8075
    DOI 10.1126/science.abj4336
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance.

    Tegally, Houriiyah / San, James E / Cotten, Matthew / Moir, Monika / Tegomoh, Bryan / Mboowa, Gerald / Martin, Darren P / Baxter, Cheryl / Lambisia, Arnold W / Diallo, Amadou / Amoako, Daniel G / Diagne, Moussa M / Sisay, Abay / Zekri, Abdel-Rahman N / Gueye, Abdou Salam / Sangare, Abdoul K / Ouedraogo, Abdoul-Salam / Sow, Abdourahmane / Musa, Abdualmoniem O /
    Sesay, Abdul K / Abias, Abe G / Elzagheid, Adam I / Lagare, Adamou / Kemi, Adedotun-Sulaiman / Abar, Aden Elmi / Johnson, Adeniji A / Fowotade, Adeola / Oluwapelumi, Adeyemi O / Amuri, Adrienne A / Juru, Agnes / Kandeil, Ahmed / Mostafa, Ahmed / Rebai, Ahmed / Sayed, Ahmed / Kazeem, Akano / Balde, Aladje / Christoffels, Alan / Trotter, Alexander J / Campbell, Allan / Keita, Alpha K / Kone, Amadou / Bouzid, Amal / Souissi, Amal / Agweyu, Ambrose / Naguib, Amel / Gutierrez, Ana V / Nkeshimana, Anatole / Page, Andrew J / Yadouleton, Anges / Vinze, Anika / Happi, Anise N / Chouikha, Anissa / Iranzadeh, Arash / Maharaj, Arisha / Batchi-Bouyou, Armel L / Ismail, Arshad / Sylverken, Augustina A / Goba, Augustine / Femi, Ayoade / Sijuwola, Ayotunde E / Marycelin, Baba / Salako, Babatunde L / Oderinde, Bamidele S / Bolajoko, Bankole / Diarra, Bassirou / Herring, Belinda L / Tsofa, Benjamin / Lekana-Douki, Bernard / Mvula, Bernard / Njanpop-Lafourcade, Berthe-Marie / Marondera, Blessing T / Khaireh, Bouh Abdi / Kouriba, Bourema / Adu, Bright / Pool, Brigitte / McInnis, Bronwyn / Brook, Cara / Williamson, Carolyn / Nduwimana, Cassien / Anscombe, Catherine / Pratt, Catherine B / Scheepers, Cathrine / Akoua-Koffi, Chantal G / Agoti, Charles N / Mapanguy, Chastel M / Loucoubar, Cheikh / Onwuamah, Chika K / Ihekweazu, Chikwe / Malaka, Christian N / Peyrefitte, Christophe / Grace, Chukwa / Omoruyi, Chukwuma E / Rafaï, Clotaire D / Morang'a, Collins M / Erameh, Cyril / Lule, Daniel B / Bridges, Daniel J / Mukadi-Bamuleka, Daniel / Park, Danny / Rasmussen, David A / Baker, David / Nokes, David J / Ssemwanga, Deogratius / Tshiabuila, Derek / Amuzu, Dominic S Y / Goedhals, Dominique / Grant, Donald S / Omuoyo, Donwilliams O / Maruapula, Dorcas / Wanjohi, Dorcas W / Foster-Nyarko, Ebenezer / Lusamaki, Eddy K / Simulundu, Edgar / Ong'era, Edidah M / Ngabana, Edith N / Abworo, Edward O / Otieno, Edward / Shumba, Edwin / Barasa, Edwine / Ahmed, El Bara / Ahmed, Elhadi A / Lokilo, Emmanuel / Mukantwari, Enatha / Philomena, Eromon / Belarbi, Essia / Simon-Loriere, Etienne / Anoh, Etilé A / Manuel, Eusebio / Leendertz, Fabian / Taweh, Fahn M / Wasfi, Fares / Abdelmoula, Fatma / Takawira, Faustinos T / Derrar, Fawzi / Ajogbasile, Fehintola V / Treurnicht, Florette / Onikepe, Folarin / Ntoumi, Francine / Muyembe, Francisca M / Ragomzingba, Frank E Z / Dratibi, Fred A / Iyanu, Fred-Akintunwa / Mbunsu, Gabriel K / Thilliez, Gaetan / Kay, Gemma L / Akpede, George O / van Zyl, Gert U / Awandare, Gordon A / Kpeli, Grace S / Schubert, Grit / Maphalala, Gugu P / Ranaivoson, Hafaliana C / Omunakwe, Hannah E / Onywera, Harris / Abe, Haruka / Karray, Hela / Nansumba, Hellen / Triki, Henda / Kadjo, Herve Albéric Adje / Elgahzaly, Hesham / Gumbo, Hlanai / Mathieu, Hota / Kavunga-Membo, Hugo / Smeti, Ibtihel / Olawoye, Idowu B / Adetifa, Ifedayo M O / Odia, Ikponmwosa / Ben Boubaker, Ilhem Boutiba / Muhammad, Iluoreh Ahmed / Ssewanyana, Isaac / Wurie, Isatta / Konstantinus, Iyaloo S / Halatoko, Jacqueline Wemboo Afiwa / Ayei, James / Sonoo, Janaki / Makangara, Jean-Claude C / Tamfum, Jean-Jacques M / Heraud, Jean-Michel / Shaffer, Jeffrey G / Giandhari, Jennifer / Musyoki, Jennifer / Nkurunziza, Jerome / Uwanibe, Jessica N / Bhiman, Jinal N / Yasuda, Jiro / Morais, Joana / Kiconco, Jocelyn / Sandi, John D / Huddleston, John / Odoom, John K / Morobe, John M / Gyapong, John O / Kayiwa, John T / Okolie, Johnson C / Xavier, Joicymara S / Gyamfi, Jones / Wamala, Joseph F / Bonney, Joseph H K / Nyandwi, Joseph / Everatt, Josie / Nakaseegu, Joweria / Ngoi, Joyce M / Namulondo, Joyce / Oguzie, Judith U / Andeko, Julia C / Lutwama, Julius J / Mogga, Juma J H / O'Grady, Justin / Siddle, Katherine J / Victoir, Kathleen / Adeyemi, Kayode T / Tumedi, Kefentse A / Carvalho, Kevin S / Mohammed, Khadija Said / Dellagi, Koussay / Musonda, Kunda G / Duedu, Kwabena O / Fki-Berrajah, Lamia / Singh, Lavanya / Kepler, Lenora M / Biscornet, Leon / de Oliveira Martins, Leonardo / Chabuka, Lucious / Olubayo, Luicer / Ojok, Lul Deng / Deng, Lul Lojok / Ochola-Oyier, Lynette I / Tyers, Lynn / Mine, Madisa / Ramuth, Magalutcheemee / Mastouri, Maha / ElHefnawi, Mahmoud / Mbanne, Maimouna / Matsheka, Maitshwarelo I / Kebabonye, Malebogo / Diop, Mamadou / Momoh, Mambu / Lima Mendonça, Maria da Luz / Venter, Marietjie / Paye, Marietou F / Faye, Martin / Nyaga, Martin M / Mareka, Mathabo / Damaris, Matoke-Muhia / Mburu, Maureen W / Mpina, Maximillian G / Owusu, Michael / Wiley, Michael R / Tatfeng, Mirabeau Y / Ayekaba, Mitoha Ondo'o / Abouelhoda, Mohamed / Beloufa, Mohamed Amine / Seadawy, Mohamed G / Khalifa, Mohamed K / Matobo, Mooko Marethabile / Kane, Mouhamed / Salou, Mounerou / Mbulawa, Mphaphi B / Mwenda, Mulenga / Allam, Mushal / Phan, My V T / Abid, Nabil / Rujeni, Nadine / Abuzaid, Nadir / Ismael, Nalia / Elguindy, Nancy / Top, Ndeye Marieme / Dia, Ndongo / Mabunda, Nédio / Hsiao, Nei-Yuan / Silochi, Nelson Boricó / Francisco, Ngiambudulu M / Saasa, Ngonda / Bbosa, Nicholas / Murunga, Nickson / Gumede, Nicksy / Wolter, Nicole / Sitharam, Nikita / Ndodo, Nnaemeka / Ajayi, Nnennaya A / Tordo, Noël / Mbhele, Nokuzola / Razanajatovo, Norosoa H / Iguosadolo, Nosamiefan / Mba, Nwando / Kingsley, Ojide C / Sylvanus, Okogbenin / Femi, Oladiji / Adewumi, Olubusuyi M / Testimony, Olumade / Ogunsanya, Olusola A / Fakayode, Oluwatosin / Ogah, Onwe E / Oludayo, Ope-Ewe / Faye, Ousmane / Smith-Lawrence, Pamela / Ondoa, Pascale / Combe, Patrice / Nabisubi, Patricia / Semanda, Patrick / Oluniyi, Paul E / Arnaldo, Paulo / Quashie, Peter Kojo / Okokhere, Peter O / Bejon, Philip / Dussart, Philippe / Bester, Phillip A / Mbala, Placide K / Kaleebu, Pontiano / Abechi, Priscilla / El-Shesheny, Rabeh / Joseph, Rageema / Aziz, Ramy Karam / Essomba, René G / Ayivor-Djanie, Reuben / Njouom, Richard / Phillips, Richard O / Gorman, Richmond / Kingsley, Robert A / Neto Rodrigues, Rosa Maria D E S A / Audu, Rosemary A / Carr, Rosina A A / Gargouri, Saba / Masmoudi, Saber / Bootsma, Sacha / Sankhe, Safietou / Mohamed, Sahra Isse / Femi, Saibu / Mhalla, Salma / Hosch, Salome / Kassim, Samar Kamal / Metha, Samar / Trabelsi, Sameh / Agwa, Sara Hassan / Mwangi, Sarah Wambui / Doumbia, Seydou / Makiala-Mandanda, Sheila / Aryeetey, Sherihane / Ahmed, Shymaa S / Ahmed, Side Mohamed / Elhamoumi, Siham / Moyo, Sikhulile / Lutucuta, Silvia / Gaseitsiwe, Simani / Jalloh, Simbirie / Andriamandimby, Soa Fy / Oguntope, Sobajo / Grayo, Solène / Lekana-Douki, Sonia / Prosolek, Sophie / Ouangraoua, Soumeya / van Wyk, Stephanie / Schaffner, Stephen F / Kanyerezi, Stephen / Ahuka-Mundeke, Steve / Rudder, Steven / Pillay, Sureshnee / Nabadda, Susan / Behillil, Sylvie / Budiaki, Sylvie L / van der Werf, Sylvie / Mashe, Tapfumanei / Mohale, Thabo / Le-Viet, Thanh / Velavan, Thirumalaisamy P / Schindler, Tobias / Maponga, Tongai G / Bedford, Trevor / Anyaneji, Ugochukwu J / Chinedu, Ugwu / Ramphal, Upasana / George, Uwem E / Enouf, Vincent / Nene, Vishvanath / Gorova, Vivianne / Roshdy, Wael H / Karim, Wasim Abdul / Ampofo, William K / Preiser, Wolfgang / Choga, Wonderful T / Ahmed, Yahaya Ali / Ramphal, Yajna / Bediako, Yaw / Naidoo, Yeshnee / Butera, Yvan / de Laurent, Zaydah R / Ouma, Ahmed E O / von Gottberg, Anne / Githinji, George / Moeti, Matshidiso / Tomori, Oyewale / Sabeti, Pardis C / Sall, Amadou A / Oyola, Samuel O / Tebeje, Yenew K / Tessema, Sofonias K / de Oliveira, Tulio / Happi, Christian / Lessells, Richard / Nkengasong, John / Wilkinson, Eduan

    Science (New York, N.Y.)

    2022  Volume 378, Issue 6615, Page(s) eabq5358

    Abstract: Investment in severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) sequencing in Africa over the past year has led to a major increase in the number of sequences that have been generated and used to track the pandemic on the continent, a number ... ...

    Abstract Investment in severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) sequencing in Africa over the past year has led to a major increase in the number of sequences that have been generated and used to track the pandemic on the continent, a number that now exceeds 100,000 genomes. Our results show an increase in the number of African countries that are able to sequence domestically and highlight that local sequencing enables faster turnaround times and more-regular routine surveillance. Despite limitations of low testing proportions, findings from this genomic surveillance study underscore the heterogeneous nature of the pandemic and illuminate the distinct dispersal dynamics of variants of concern-particularly Alpha, Beta, Delta, and Omicron-on the continent. Sustained investment for diagnostics and genomic surveillance in Africa is needed as the virus continues to evolve while the continent faces many emerging and reemerging infectious disease threats. These investments are crucial for pandemic preparedness and response and will serve the health of the continent well into the 21st century.
    MeSH term(s) Africa/epidemiology ; COVID-19/epidemiology ; COVID-19/virology ; Epidemiological Monitoring ; Genomics ; Humans ; Pandemics ; SARS-CoV-2/genetics
    Language English
    Publishing date 2022-10-07
    Publishing country United States
    Document type Journal Article
    ZDB-ID 128410-1
    ISSN 1095-9203 ; 0036-8075
    ISSN (online) 1095-9203
    ISSN 0036-8075
    DOI 10.1126/science.abq5358
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance.

    Tegally, Houriiyah / San, James E. / Cotten, Matthew / Tegomoh, Bryan / Mboowa, Gerald / Martin, Darren P. / Baxter, Cheryl / Moir, Monika / Lambisia, Arnold / Diallo, Amadou / Amoako, Daniel G. / Diagne, Moussa M. / Sisay, Abay / Zekri, Abdel-Rahman N. / Barakat, Abdelhamid / Gueye, Abdou Salam / Sangare, Abdoul K. / Ouedraogo, Abdoul-Salam / SOW, Abdourahmane /
    Musa, Abdualmoniem O. / Sesay, Abdul K. / LAGARE, Adamou / Kemi, Adedotun-Sulaiman / Abar, Aden Elmi / Johnson, Adeniji A. / Fowotade, Adeola / Olubusuyi, Adewumi M. / Oluwapelumi, Adeyemi O. / Amuri, Adrienne A. / Juru, Agnes / Ramadan, Ahmad Mabrouk / Kandeil, Ahmed / Mostafa, Ahmed / Rebai, Ahmed / Sayed, Ahmed / Kazeem, Akano / Balde, Aladje / Christoffels, Alan / Trotter, Alexander J. / Campbell, Allan / KEITA, Alpha Kabinet / Kone, Amadou / Bouzid, Amal / Souissi, Amal / Agweyu, Ambrose / Gutierrez, Ana V. / Page, Andrew J. / Yadouleton, Anges / Vinze, Anika / Happi, Anise N. / Chouikha, Anissa / Iranzadeh, Arash / Maharaj, Arisha / Batchi-Bouyou, Armel Landry / Ismail, Arshad / Sylverken, Augustina / Goba, Augustine / Femi, Ayoade / Sijuwola, Ayotunde Elijah / Ibrahimi, Azeddine / Marycelin, Baba / Salako, Babatunde Lawal / Oderinde, Bamidele S. / Bolajoko, Bankole / Dhaala, Beatrice / Herring, Belinda L. / Tsofa, Benjamin / Mvula, Bernard / Njanpop-Lafourcade, Berthe-Marie / Marondera, Blessing T. / KHAIREH, Bouh Abdi / Kouriba, Bourema / Adu, Bright / Pool, Brigitte / McInnis, Bronwyn / Brook, Cara / Williamson, Carolyn / Anscombe, Catherine / Pratt, Catherine B. / Scheepers, Cathrine / Akoua-Koffi, Chantal G. / Agoti, Charles N. / Loucoubar, Cheikh / Onwuamah, Chika Kingsley / Ihekweazu, Chikwe / MALAKA, Christian Noel / Peyrefitte, Christophe / Omoruyi, Chukwuma Ewean / Rafai, Clotaire Donatien / Morang'a, Collins M. / Nokes, D. James / Lule, Daniel Bugembe / Bridges, Daniel J. / Mukadi-Bamuleka, Daniel / Park, Danny / Baker, David / Doolabh, Deelan / Ssemwanga, Deogratius / Tshiabuila, Derek / Bassirou, Diarra / Amuzu, Dominic S.Y. / Goedhals, Dominique / Grant, Donald S. / Omuoyo, Donwilliams O. / Maruapula, Dorcas / Wanjohi, Dorcas Waruguru / Foster-Nyarko, Ebenezer / Lusamaki, Eddy K. / Simulundu, Edgar / Ong'era, Edidah M. / Ngabana, Edith N. / Abworo, Edward O. / Otieno, Edward / Shumba, Edwin / Barasa, Edwine / AHMED, EL BARA / EL FAHIME, Elmostafa / Lokilo, Emmanuel / Mukantwari, Enatha / Cyril, Erameh / Philomena, Eromon / Belarbi, Essia / Simon-Loriere, Etienne / Anoh, Etile A. / Leendertz, Fabian / Taweh, Fahn M. / Wasfi, Fares / Abdelmoula, Fatma / Takawira, Faustinos T. / Derrar, Fawzi / Ajogbasile, Fehintola V / Treurnicht, Florette / Onikepe, Folarin / Ntoumi, Francine / Muyembe, Francisca M. / NGIAMBUDULU, FRANCISCO / Ragomzingba, Frank Edgard ZONGO / DRATIBI, Fred Athanasius / Iyanu, Fred-Akintunwa / Mbunsu, Gabriel K. / Thilliez, Gaetan / Kay, Gemma L. / Akpede, George O. / Uwem, George E / van Zyl, Gert / Awandare, Gordon A. / Schubert, Grit / Maphalala, Gugu P. / Ranaivoson, Hafaliana C. / Lemriss, Hajar / Omunakwe, Hannah E / Onywera, Harris / Abe, Haruka / KARRAY, HELA / Nansumba, Hellen / Triki, Henda / ADJE KADJO, Herve Alberic / Elgahzaly, Hesham / Gumbo, Hlanai / mathieu, HOTA / Kavunga-Membo, Hugo / Smeti, Ibtihel / Olawoye, Idowu B. / Adetifa, Ifedayo / Odia, Ikponmwosa / Boubaker, Ilhem Boutiba-Ben / Ssewanyana, Isaac / Wurie, Isatta / Konstantinus, Iyaloo S / Halatoko, Jacqueline Wemboo Afiwa / Ayei, James / Sonoo, Janaki / LEKANA-DOUKI, Jean Bernard / Makangara, Jean-Claude C. / Tamfum, Jean-Jacques M. / Heraud, Jean-Michel / Shaffer, Jeffrey G. / Giandhari, Jennifer / Musyoki, Jennifer / Uwanibe, Jessica N. / Bhiman, Jinal N. / Yasuda, Jiro / Morais, Joana / Mends, Joana Q. / Kiconco, Jocelyn / Sandi, John Demby / Huddleston, John / Odoom, John Kofi / Morobe, John M. / Gyapong, John O. / Kayiwa, John T. / Okolie, Johnson C. / Xavier, Joicymara Santos / Gyamfi, Jones / Bonney, Joseph Humphrey Kofi / Nyandwi, Joseph / Everatt, Josie / Farah, Jouali / Nakaseegu, Joweria / Ngoi, Joyce M. / Namulondo, Joyce / Oguzie, Judith U. / Andeko, Julia C. / Lutwama, Julius J. / O'Grady, Justin / Siddle, Katherine J / Victoir, Kathleen / Adeyemi, Kayode T. / Tumedi, Kefentse A. / Carvalho, Kevin Sanders / Mohammed, Khadija Said / Musonda, Kunda G. / Duedu, Kwabena O. / Belyamani, Lahcen / Fki-Berrajah, Lamia / Singh, Lavanya / Biscornet, Leon / de Oliveira Martins, Leonardo / Chabuka, Lucious / Olubayo, Luicer / Deng, Lul Lojok / Ochola-Oyier, Lynette Isabella / Mine, Madisa / Ramuth, Magalutcheemee / Mastouri, Maha / ElHefnawi, Mahmoud / Mbanne, Maimouna / Matsheka, Maitshwarelo I. / Kebabonye, Malebogo / Diop, Mamadou / Momoh, Mambu / da Luz Lima Mendonca, Maria / Venter, Marietjie / Paye, Marietou F / Faye, Martin / Nyaga, Martin M. / Mareka, Mathabo / Damaris, Matoke-Muhia / Mburu, Maureen W. / Mpina, Maximillian / MFOUTOU MAPANGUY, Claujens Chastel / Owusu, Michael / Wiley, Michael R. / Tatfeng, Mirabeau Youtchou / Ayekaba, Mitoha Ondo'o / Abouelhoda, Mohamed / Beloufa, Mohamed Amine / Seadawy, Mohamed G / Khalifa, Mohamed K. / DELLAGI, Mohammed Koussai / Matobo, Mooko Marethabile / Kane, Mouhamed / Ouadghiri, Mouna / Salou, Mounerou / Mbulawa, Mphaphi B. / Saibu, Mudashiru Femi / Mwenda, Mulenga / Phan, My V.T. / Abid, Nabil / Touil, Nadia / Rujeni, Nadine / Ismael, Nalia / Top, Ndeye Marieme / Dia, Ndongo / Mabunda, Nedio / Hsiao, Nei-yuan / Silochi, Nelson Borico / Saasa, Ngonda / Bbosa, Nicholas / Murunga, Nickson / Gumede, Nicksy / Wolter, Nicole / Sitharam, Nikita / Ndodo, Nnaemeka / Ajayi, Nnennaya A. / Tordo, Noel / Mbhele, Nokuzola / Razanajatovo, Norosoa H / Iguosadolo, Nosamiefan / Mba, Nwando / Kingsley, Ojide C. / Sylvanus, Okogbenin / Peter, Okokhere / Femi, Oladiji / Testimony, Olumade / Ogunsanya, Olusola Akinola / Fakayode, Oluwatosin / Ogah, Onwe E. / Faye, Ousmane / Smith-Lawrence, Pamela / Ondoa, Pascale / Combe, Patrice / Nabisubi, Patricia / Semanda, Patrick / Oluniyi, Paul E. / Arnaldo, Paulo / Quashie, Peter Kojo / Bejon, Philip / Dussart, Philippe / Bester, Phillip A. / Mbala, Placide K. / Kaleebu, Pontiano / Abechi, Priscilla / El-Shesheny, Rabeh / Joseph, Rageema / Aziz, Ramy Karam / Essomba, Rene Ghislain / Ayivor-Djanie, Reuben / Njouom, Richard / Phillips, Richard O. / Gorman, Richmond / Kingsley, Robert A. / Audu, Rosemary / Carr, Rosina A.A. / El Kabbaj, Saad / Gargouri, Saba / Masmoudi, Saber / Sankhe, Safietou / Mohamed, Sahra Isse / MHALLA, Salma / Hosch, Salome / Kassim, Samar Kamal / Metha, Samar / Trabelsi, Sameh / Lemriss, Sanaa / Agwa, Sara Hassan / Mwangi, Sarah Wambui / Doumbia, Seydou / Makiala-Mandanda, Sheila / Aryeetey, Sherihane / Ahmed, Shymaa S. / AHMED, SIDI MOHAMED / Elhamoumi, Siham / Moyo, Sikhulile / Lutucuta, Silvia / Gaseitsiwe, Simani / Jalloh, Simbirie / Andriamandimby, Soafy / Oguntope, Sobajo / Grayo, Solene / Lekana-Douki, Sonia / Prosolek, Sophie / Ouangraoua, Soumeya / van Wyk, Stephanie / Schaffner, Stephen F. / Kanyerezi, Stephen / AHUKA-MUNDEKE, Steve / Rudder, Steven / Pillay, Sureshnee / Nabadda, Susan / Behillil, Sylvie / Budiaki, Sylvie L. / van der Werf, Sylvie / Mashe, Tapfumanei / Aanniz, Tarik / Mohale, Thabo / Le-Viet, Thanh / Velavan, Thirumalaisamy P. / Schindler, Tobias / Maponga, Tongai / Bedford, Trevor / Anyaneji, Ugochukwu J. / Chinedu, Ugwu / Ramphal, Upasana / Enouf, Vincent / Nene, Vishvanath / Gorova, Vivianne / Roshdy, Wael H. / Abdul Karim, Wasim / Ampofo, William K. / Preiser, Wolfgang / Choga, Wonderful T. / ALI AHMED, Yahaya ALI / Ramphal, Yajna / Bediako, Yaw / Naidoo, Yeshnee / Butera, Yvan / de Laurent, Zaydah R. / Ouma, Ahmed E.O. / von Gottberg, Anne / Githinji, George / Moeti, Matshidiso / Tomori, Oyewale / Sabeti, Pardis C. / Sall, Amadou A. / Oyola, Samuel O. / Tebeje, Yenew K. / Tessema, Sofonias K. / de Oliveira, Tulio / Happi, Christian / Lessells, Richard / Nkengasong, John / Wilkinson, Eduan

    medRxiv

    Abstract: Investment in Africa over the past year with regards to SARS-CoV-2 genotyping has led to a massive increase in the number of sequences, exceeding 100,000 genomes generated to track the pandemic on the continent. Our results show an increase in the number ...

    Abstract Investment in Africa over the past year with regards to SARS-CoV-2 genotyping has led to a massive increase in the number of sequences, exceeding 100,000 genomes generated to track the pandemic on the continent. Our results show an increase in the number of African countries able to sequence within their own borders, coupled with a decrease in sequencing turnaround time. Findings from this genomic surveillance underscores the heterogeneous nature of the pandemic but we observe repeated dissemination of SARS-CoV-2 variants within the continent. Sustained investment for genomic surveillance in Africa is needed as the virus continues to evolve, particularly in the low vaccination landscape. These investments are very crucial for preparedness and response for future pathogen outbreaks.
    Keywords covid19
    Language English
    Publishing date 2022-04-20
    Publisher Cold Spring Harbor Laboratory Press
    Document type Article ; Online
    DOI 10.1101/2022.04.17.22273906
    Database COVID19

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