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Article ; Online: Rare Bacteria Can Be Used as Ecological Indicators of Grassland Degradation

Mengjun Liu / Yue Ren / Weihong Zhang

Microorganisms, Vol 11, Iss 754, p

2023 Volume 754

Abstract: Grassland degradation is a major ecological problem at present, leading to changes in the grassland environment and the soil microbial community. Here, based on full-length 16S rRNA gene sequencing, we highlight the importance of small-scale ... ...

Abstract	Grassland degradation is a major ecological problem at present, leading to changes in the grassland environment and the soil microbial community. Here, based on full-length 16S rRNA gene sequencing, we highlight the importance of small-scale environmental changes on the Qinghai-Tibet Plateau grassland for the composition and assembly processes of abundant and rare bacterial taxa. The results showed that grassland vegetation coverage affected the taxonomic and phylogenetic composition of rare bacterial taxa more than abundant bacterial taxa. The taxonomic composition and phylogenetic composition of rare bacterial taxa were also affected by soil nutrients. The relative contribution of deterministic processes (variable selection and homogeneous selection) to rare bacterial taxa was higher than that of the abundant bacterial taxa. The competitive potential within rare bacterial taxa was lower than that of the competitive potential between rare and non-rare bacterial taxa or within non-rare bacterial taxa. The assembly of rare bacterial taxa was more susceptible to environmental changes caused by grassland degradation than the abundant bacterial taxa. Furthermore, the distribution of rare bacterial taxa in the different degraded grassland soil was more local than that of abundant bacterial taxa. Thus, rare bacterial taxa could be considered an ecological indicator of grassland degradation. These findings help to improve our understanding of the composition and assembly mechanism of the bacterial communities in degraded grassland and provide a basis for the establishment of the grassland degradation management strategy.
Keywords	grassland degradation ; bacterial community ; community assembly ; co-occurrence patterns ; Qinghai-Tibet Plateau ; Biology (General) ; QH301-705.5
Subject code	333
Language	English
Publishing date	2023-03-01T00:00:00Z
Publisher	MDPI AG
Document type	Article ; Online
Database	BASE - Bielefeld Academic Search Engine (life sciences selection)

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Article ; Online: Genome-wide identification and expression profile analysis of SWEET genes in Chinese jujube

Chong Yang / Xuan Zhao / Zhi Luo / Lihu Wang / Mengjun Liu

PeerJ, Vol 11, p e

2023 Volume 14704

Abstract: The novel sugar transporter known as SWEET (sugars will eventually be exported transporter) is involved in the transport and distribution of photosynthesis products in plants. The SWEET protein is also involved in pollen development, nectar secretion, ... ...

Abstract	The novel sugar transporter known as SWEET (sugars will eventually be exported transporter) is involved in the transport and distribution of photosynthesis products in plants. The SWEET protein is also involved in pollen development, nectar secretion, stress responses, and other important physiological processes. Although SWEET genes have been characterized and identified in model plants, such as Arabidopsis and rice, little is known about them in jujube. In this study, the molecular characteristics of the SWEET gene family in the Chinese jujube (Ziziphus jujuba Mill.) and their expression patterns in different organs, at different fruit developmental stages, and under abiotic stress were analyzed. A total of 19 ZjSWEET genes were identified in jujube through a genome-wide study; these were classified into four sub-groups based on their phylogenic relationships. The gene structure analysis of ZjSWEET genes showed that all the members had introns. The expression patterns of different ZjSWEET genes varied significantly in different organs (root, shoot, leave, flower, fruit), which indicated that ZjSWEETs play different roles in multiple organs. According to the expression profiles by quantitative real-time PCR analysis during fruit development, the expression levels of the two genes (ZjSWEET11, ZjSWEET18) gradually increased with the development of the fruit and reached a high level at the full-red fruit stage. A prediction of the cis-acting regulatory elements indicated that the promoter sequences of ZjSWEETs contained nine types of phytohormone-responsive cis-regulatory elements and six environmental factors. In addition, the expression profiles by quantitative real-time PCR analysis showed that some of the ZjSWEETs responded to environmental changes; ZjSWEET2 was highly induced in response to cold stress, and ZjSWEET8 was significantly up-regulated in response to alkali and salt stresses. This study showed that the functions of the ZjSWEET family members of jujube are different, and some may play an important ...
Keywords	Chinses jujube ; ZjSWEETs ; Expression pattern ; Abiotic stress ; Medicine ; R ; Biology (General) ; QH301-705.5
Subject code	580
Language	English
Publishing date	2023-01-01T00:00:00Z
Publisher	PeerJ Inc.
Document type	Article ; Online
Database	BASE - Bielefeld Academic Search Engine (life sciences selection)

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Article ; Online: Contribution of the LAC Genes in Fruit Quality Attributes of the Fruit-Bearing Plants

Muhammad Khalil Ullah Khan / Xiaojie Zhang / Zitan Ma / Mingxia Huang / Ce Yang / Xiaoming Wang / Mengjun Liu / Jianying Peng

International Journal of Molecular Sciences, Vol 24, Iss 21, p

A Comprehensive Review

2023 Volume 15768

Abstract: Laccase genes produce laccase enzymes that play a crucial role in the production of lignin and oxidation reactions within plants. Lignin is a complex polymer that provides structure and toughness to the cell walls of numerous fruit plants. The LAC genes ... ...

Abstract	Laccase genes produce laccase enzymes that play a crucial role in the production of lignin and oxidation reactions within plants. Lignin is a complex polymer that provides structure and toughness to the cell walls of numerous fruit plants. The LAC genes that encode laccase enzymes play vital roles in plant physiology, including the synthesis of pigments like PA that contribute to the colors of fruits, and in defending against pathogens and environmental stresses. They are crucial for fruit development, ripening, structural maintenance in plants, and adaptation to various environmental factors. As such, these genes and enzymes are essential for plant growth and development, as well as for various biotechnological applications in environmental remediation and industrial processes. This review article emphasizes the significance of genes encoding laccase enzymes during fruit growth, specifically pertaining to the strengthening of the endocarp through lignification. This process is crucial for ensuring fruit defense and optimizing seed scattering. The information gathered in this article will aid breeders in producing future fruit-bearing plants that are resistant to disease, cost-effective, and nutrient-rich.
Keywords	LAC genes ; endocarp ; flesh lignification ; defense ; pigmentation ; degradation ; Biology (General) ; QH301-705.5 ; Chemistry ; QD1-999
Subject code	580
Language	English
Publishing date	2023-10-01T00:00:00Z
Publisher	MDPI AG
Document type	Article ; Online
Database	BASE - Bielefeld Academic Search Engine (life sciences selection)

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Article ; Online: Establishment and characterization of a new class of adenylate cyclases (class VII ACs) in plants

Zhiguo Liu / Ye Yuan / Lixin Wang / Haonan Cao / Chenyu Wang / Xuan Zhao / Lili Wang / Mengjun Liu

Heliyon, Vol 9, Iss 8, Pp e18612- (2023)

2023

Abstract: Adenylate cyclase is the key enzyme in the synthesis of cAMP. Now, more and more plant genes which possessing AC function are being identified, but the classification of plant ACs has not yet been systematically studied and the relationship of plant ACs ... ...

Abstract	Adenylate cyclase is the key enzyme in the synthesis of cAMP. Now, more and more plant genes which possessing AC function are being identified, but the classification of plant ACs has not yet been systematically studied and the relationship of plant ACs with other existing six classes ACs in animals and microorganisms is still unclear. In this study, we found that 7 of the 15 reported plant ACs with conserved CYTH-like_AC_Ⅳ-like domain were clustered into a group with high confidence (Group Ⅳ), while the other plant ACs were clustered into other three groups with no common domain. In addition, we also found that the Group Ⅳ plant ACs were grouped into an independent and specific class (Class VII), separated from the existing six classes of ACs. The Group Ⅳ plant ACs, compared to the existing six classes of ACs, own unique CYTH-like_AC_Ⅳ-like conserved domain and EXEXK signature motif, characteristic protein tertiary structures, specific subcellular localization and catalytic conditions. In view of the above, we regarded the Group Ⅳ plant ACs as the seventh class of AC (VII AC). This study does the systematic classification of plant ACs which could lay a foundation for further identification and study of the biological functions of the plant-specific VII ACs.
Keywords	Plant ; Adenylate cyclases ; Classification ; Class VII ACs ; cAMP ; Science (General) ; Q1-390 ; Social sciences (General) ; H1-99
Subject code	580
Language	English
Publishing date	2023-08-01T00:00:00Z
Publisher	Elsevier
Document type	Article ; Online
Database	BASE - Bielefeld Academic Search Engine (life sciences selection)

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Article: Genetic analysis of mixed models of fruit sugar-acid fractions in a cross between jujube (

Zhi, Yang / Chuanjiang, Zhang / Xinfang, Yang / Mengyi, Dong / Zhenlei, Wang / Fenfen, Yan / Cuiyun, Wu / Jiurui, Wang / Mengjun, Liu / Minjuan, Lin

Frontiers in plant science

2023 Volume 14, Page(s) 1181903

Abstract: Chinese jujube ( ...

Abstract	Chinese jujube (
Language	English
Publishing date	2023-05-12
Publishing country	Switzerland
Document type	Journal Article
ZDB-ID	2613694-6
ISSN	1664-462X
ISSN	1664-462X
DOI	10.3389/fpls.2023.1181903
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Article ; Online: Expression Stabilities of Candidate Reference Genes for RT-qPCR in Chinese Jujube (Ziziphus jujuba Mill.) under a Variety of Conditions.

Jiaodi Bu / Jin Zhao / Mengjun Liu

PLoS ONE, Vol 11, Iss 4, p e

2016 Volume 0154212

Abstract: Reverse transcription-quantitative real-time polymerase chain reaction (RT-qPCR) is a powerful method for evaluating patterns of gene expression. Jujube whole-genome sequencing has been completed, and analysis of gene function, an important part of any ... ...

Abstract	Reverse transcription-quantitative real-time polymerase chain reaction (RT-qPCR) is a powerful method for evaluating patterns of gene expression. Jujube whole-genome sequencing has been completed, and analysis of gene function, an important part of any follow-up study, requires the appropriate selection of reference genes. Indeed, suitable reference gene selection for RT-qPCR is critical for accurate normalization of target gene expression. In this study, the software packages geNorm and NormFinder were employed to examine the expression stabilities of nine candidate reference genes under a variety of conditions. Actin-depolymerizing factor 1 (ACT1), Histone-H3 (His3), and Polyadenylate-binding protein-interacting protein (PAIP) were determined to be the most stably expressed genes during five stages of fruit development and ACT1, SiR-Fd, BTF3, and Tubulin alpha chain (TUA) across different tissues/organs. Whereas ACT1, Basic Transcription factor 3 (BTF3), Glyceraldehyde-3-phosphate dehydrogenase (GADPH), and PAIP were the most stable under dark conditions. ACT1, PAIP, BTF3, and Elongation factor 1- gamma (EF1γ) were the most stably expressed genes under phytoplasma infection. Among these genes, SiR-Fd and PAIP are here first reported as stable reference genes. When normalized using these most stable reference genes, the expression patterns of four target genes were found to be in accordance with physiological data, indicating that the reference genes selected in our study are suitable for use in such analyses. This study provides appropriate reference genes and corresponding primers for further RT-qPCR studies in Chinese jujube and emphasizes the importance of validating reference genes for gene expression analysis under variable experimental conditions.
Keywords	Medicine ; R ; Science ; Q
Subject code	570
Language	English
Publisher	Public Library of Science (PLoS)
Document type	Article ; Online
Database	BASE - Bielefeld Academic Search Engine (life sciences selection)

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Article ; Online: Collusion-Tolerable and Efficient Privacy-Preserving Time-Series Data Aggregation Protocol

Yongkai Li / Shubo Liu / Jun Wang / Mengjun Liu

International Journal of Distributed Sensor Networks, Vol

2016 Volume 12

Abstract: Many miraculous ideas have been proposed to deal with the privacy-preserving time-series data aggregation problem in pervasive computing applications, such as mobile cloud computing. The main challenge consists in computing the global statistics of ... ...

Abstract	Many miraculous ideas have been proposed to deal with the privacy-preserving time-series data aggregation problem in pervasive computing applications, such as mobile cloud computing. The main challenge consists in computing the global statistics of individual inputs that are protected by some confidentiality mechanism. However, those works either suffer from collusive attack or require time-consuming initialization at every aggregation request. In this paper, we proposed an efficient aggregation protocol which tolerates up to k passive adversaries that do not try to tamper the computation. The proposed protocol does not require a trusted key dealer and needs only one initialization during the whole time-series data aggregation. We formally analyzed the security of our protocol and results showed that the protocol is secure if the Computational Diffie-Hellman (CDH) problem is intractable. Furthermore, the implementation showed that the proposed protocol can be efficient for the time-series data aggregation.
Keywords	Electronic computers. Computer science ; QA75.5-76.95
Subject code	005
Language	English
Publishing date	2016-07-01T00:00:00Z
Publisher	SAGE Publishing
Document type	Article ; Online
Database	BASE - Bielefeld Academic Search Engine (life sciences selection)

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Article ; Online: Expression profiles of genes and enzymes related to ascorbic acid metabolism in fruits of Ziziphus jujuba Mill. ´Jinsixiaozao´

Yingying CHEN,Zhihui ZHAO,Jin ZHAO, Mengjun LIU

Frontiers of Agricultural Science and Engineering, Vol 3, Iss 2, Pp 131-

2016 Volume 136

Abstract: The fruit of Chinese jujube (Ziziphus jujuba) possesses extremely high concentrations of ascorbic acid (AsA). The accumulation of AsA, the expression patterns of the nine genes related to AsA metabolism as well as the activities of five enzymes involved ... ...

Abstract	The fruit of Chinese jujube (Ziziphus jujuba) possesses extremely high concentrations of ascorbic acid (AsA). The accumulation of AsA, the expression patterns of the nine genes related to AsA metabolism as well as the activities of five enzymes involved in AsA synthesis, oxidation and recycling were investigated during fruit development in Z. jujuba Mill. 'Jinsixiaozao'. The results showed that the high level of AsA accumulation in jujube fruit is due to a contribution from both AsA biosynthesis and AsA recycling. It is suggested that L-galactono-1,4-lactone dehydrogenase, ascorbate peroxidase and monodehydro-ascorbate reductase are the crucial genes/enzymes of jujube AsA synthesis, oxidization and recycling, respectively. These results provide useful new insights into the regulatory mechanisms of AsA accumulation in Chinese jujube.
Keywords	Chinese jujube\|ascorbic acid\|metabolism\|gene\|enzyme ; Agriculture (General) ; S1-972
Language	English
Publishing date	2016-06-01T00:00:00Z
Publisher	Higher Education Press
Document type	Article ; Online
Database	BASE - Bielefeld Academic Search Engine (life sciences selection)

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Article: The effect of deep eutectic solvent on the pharmacokinetics of salvianolic acid B in rats and its acute toxicity test

Chen, Jue / Liwei Zhang / Mengjun Liu / Qi Wang

Journal of chromatography. 2017 Sept. 15, v. 1063

2017

Abstract: Deep eutectic solvent (DES), the benign green solvent with uniquely physical properties, has been widely applied in various fields. Our previous study indicated that DES could improve the stability and extraction efficiency of salvianolic acid B (SAB). ... ...

Abstract	Deep eutectic solvent (DES), the benign green solvent with uniquely physical properties, has been widely applied in various fields. Our previous study indicated that DES could improve the stability and extraction efficiency of salvianolic acid B (SAB). In this work, with SAB as a model drug, the feasibility of DES as a drug carrier for oral preparation was investigated by evaluating the influence of DES on the pharmacokinetics of SAB and the toxicity of DES. Acute oral toxicity test illustrated that choline chloride-glycerol (ChCl-GL, molar ratio 1:2) was non-toxic with the median lethal dose of 7733mg/kg. To comparison the difference of pharmacokinetics between SAB dissolved in ChCl-GL (1:2) and in water, a rapid and sensitive ultra-performance liquid chromatography coupled with mass spectrum was established to determine SAB and its metabolites in rat plasma. The method validation was also tested for the specificity, linearity (r2>0.9980 over two orders of magnitude), precision (intra-day relative standard deviation (RSD)<2.73% and inter-day RSD<7.72%), extraction recovery (70.96–80.78%) and stability under three different situations. Compared to water, the pharmacokinetic parameters clarified that ChCl-GL (1:2) could promote the absorption of SAB, the peak concentration (Cmax) of 0.308±0.020mg/L was slightly higher than 0.277±0.024mg/L (SAB dissolved in water), and the peak time (Tmax) was significantly decreased from 30min (SAB dissolved in water) to 20min. There was no significant difference on the metabolites between SAB dissolved in ChCl-GL (1:2) and in water. This is the first report on the pharmacokinetic study of DES as a candidate of drug carrier, and the results provide a meaningful basis for the application of DES in pharmaceutical preparation.
Keywords	absorption ; acute toxicity ; choline ; dietary exposure ; drug carriers ; drugs ; lethal dose 50 ; metabolites ; models ; pharmacokinetics ; physical properties ; rats ; salvianolic acid ; solvents ; statistical analysis ; toxicity testing ; ultra-performance liquid chromatography
Language	English
Dates of publication	2017-0915
Size	p. 60-66.
Publishing place	Elsevier B.V.
Document type	Article
ISSN	1570-0232
DOI	10.1016/j.jchromb.2017.08.016
Database	NAL-Catalogue (AGRICOLA)

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Article: Photosynthetic responses to phytoplasma infection in Chinese jujube

Liu, Zhiguo / Jin Zhao / Mengjun Liu

Plant physiology and biochemistry. 2016 Aug., v. 105

2016

Abstract: Phytoplasma is one of the most devastating plant pathogens. Jujube witches' broom (JWB) is a typical and highly fatal phytoplasma disease of Chinese jujube (Ziziphus jujuba Mill.), which is widely cultivated in Asia. To further elucidate the mechanism of ...

Abstract	Phytoplasma is one of the most devastating plant pathogens. Jujube witches' broom (JWB) is a typical and highly fatal phytoplasma disease of Chinese jujube (Ziziphus jujuba Mill.), which is widely cultivated in Asia. To further elucidate the mechanism of plant-phytoplasma interaction, we first compared the effects of phytoplasma infection on photosynthetic pigments and activities between a JWB-resistant cultivar (Xingguang) and a susceptible cultivar (Pozao). Total chlorophyll and carotenoid levels were significantly decreased in the susceptible cultivar at later stages of infection, but were remarkably increased in the resistant cultivar at the earlier stages. Compared to uninfected plant, a significant decrease in the main photochemical parameters (Fv/Fm, ΦPSII and qP) was recorded at the initial stages of infection in the resistant cultivar, but occurred at later stages in the susceptible cultivar. Meanwhile, the qRT-PCR results of four key photosynthesis-related genes (ZjGluTR, ZjCBP, ZjRubisco and ZjRCA2) demonstrated that the expression patterns were similar in uninfected cultivars, but up-regulated in resistant cultivar and down-regulated in the susceptible one at 12 wks after grafting inoculation. Collectively, our data indicated that the resistant cultivar ‘Xingguang’ undergoes a decrease in initial stage (inhibiting phytoplasma multiplication) and then a rapid enhancement of photosynthetic activity (helping jujube recovery) in response to phytoplasma infection, while the susceptible cultivar ‘Pozao’ displays a later decrease in photosynthetic activity. The novel photosynthetic response pattern of the resistant cultivar may contribute to its stronger immunity to phytoplasma infection, which provides new insights into plant-phytoplasma interactions.
Keywords	carotenoids ; chlorophyll ; cultivars ; gene expression regulation ; genes ; immunity ; photosynthesis ; Phytoplasma ; phytoplasmal diseases ; pigments ; plant pathogenic bacteria ; quantitative polymerase chain reaction ; reverse transcriptase polymerase chain reaction ; witches' broom ; Ziziphus jujuba ; Asia
Language	English
Dates of publication	2016-08
Size	p. 12-20.
Publishing place	Elsevier Masson SAS
Document type	Article
ZDB-ID	742978-2
ISSN	1873-2690 ; 0981-9428
ISSN (online)	1873-2690
ISSN	0981-9428
DOI	10.1016/j.plaphy.2016.04.003
Database	NAL-Catalogue (AGRICOLA)

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