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  1. AU="Mereu, I"
  2. AU="Irum, Sidra"
  3. AU="Ghanbar, Mohammad"

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  1. Artikel ; Online: On the interplay between the slowdown of dynamics and the kinetics of aggregation: The case study of a reactive binary mixture.

    Mereu, Isabella / Liotta, Andrea / Comez, Lucia / Corezzi, Silvia

    The Journal of chemical physics

    2015  Band 142, Heft 15, Seite(n) 154905

    Abstract: Modeling the kinetics of aggregation requires a proper strategy to take into account not only the reactivity of reagents but also the ability they have to diffuse. The lack of direct information about diffusion represents the most serious experimental ... ...

    Abstract Modeling the kinetics of aggregation requires a proper strategy to take into account not only the reactivity of reagents but also the ability they have to diffuse. The lack of direct information about diffusion represents the most serious experimental obstacle to the use of diffusion-corrected mean-field equations, which is usually overcome by using information on the structural relaxation dynamics. A very accurate description of the entire kinetics of aggregation can be made by introducing a single time scale of diffusion, set by the structural relaxation time τ of the system according to ∼τ(ξ), with ξ a fractional exponent. Here, we apply this modeling to the case of a reactive binary mixture made of diglycidyl ether of bisphenol-A and 1,3-phenylenediamine, where the reaction proceeds along an autocatalyic (hydroxyl catalyzed) and a non-catalytic (impurity catalyzed) pathway and find that a very small value of the exponent ξ = 0.27 ± 0.03 is needed to reproduce all the data. Our results help revise some preconceived ideas: contrary to widely held assumptions, we find that (i) the time scale of diffusion neither increases proportionally to the structural relaxation time nor is related to τ by a power law with the same fractional exponent as that relating τ to conductivity; (ii) no direct connection exists between the transition to diffusion-control and the development of a gel network or formation of a glassy phase; and (iii) there is no significant difference in the enthalpy barrier for bond formation in the presence of hydroxyl or other than hydroxyl catalyst groups.
    Mesh-Begriff(e) Benzhydryl Compounds/chemistry ; Diffusion ; Glyceryl Ethers/chemistry ; Kinetics ; Molecular Structure ; Phenols/chemistry ; Phenylenediamines/chemistry ; Thermodynamics
    Chemische Substanzen Benzhydryl Compounds ; Glyceryl Ethers ; Phenols ; Phenylenediamines ; bisphenol A (MLT3645I99) ; 3-phenylenediamine (OE624J2447)
    Sprache Englisch
    Erscheinungsdatum 2015-04-21
    Erscheinungsland United States
    Dokumenttyp Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 3113-6
    ISSN 1089-7690 ; 0021-9606
    ISSN (online) 1089-7690
    ISSN 0021-9606
    DOI 10.1063/1.4918743
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  2. Artikel: A Hybrid All-Atom Structure-Based Model for Protein Folding and Large Scale Conformational Transitions.

    Sutto, Ludovico / Mereu, Ilaria / Gervasio, Francesco Luigi

    Journal of chemical theory and computation

    2011  Band 7, Heft 12, Seite(n) 4208–4217

    Abstract: Structure-based models are successful at conjugating the essence of the energy landscape theory of protein folding with an easy and efficient implementation. Recently, their realm expanded beyond a single protein structure, and structure-based potentials ...

    Abstract Structure-based models are successful at conjugating the essence of the energy landscape theory of protein folding with an easy and efficient implementation. Recently, their realm expanded beyond a single protein structure, and structure-based potentials have been used profitably to widely study complex conformational transitions. Still, when dealing with structural rearrangements between two, or more, well-defined structures, an unbiased and transferable description of the local backbone and side chain interactions could be advantageous. Here, we propose an all-atom model that merges a classical force field description of these local interactions with a structure-based long-range potential that takes into account the different conformations. We first validate the model simulating and characterizing the folding reaction and the transition state of two well-known proteins: the villin headpiece and the SH3 domain. Then, we characterize the activation mechanism of the catalytic domain of c-Src kinase. Such a process involves the conformational rearrangement of a large loop and the swing of an α helix. The appearance of a stable intermediate state in the free energy landscape between the two conformational end points suggests the mechanism of the loop opening. The low computational cost of the model together with the satisfactory accuracy of the results make it a promising approach to studying conformational transitions in large protein systems.
    Sprache Englisch
    Erscheinungsdatum 2011-12-13
    Erscheinungsland United States
    Dokumenttyp Journal Article
    ISSN 1549-9618
    ISSN 1549-9618
    DOI 10.1021/ct200547m
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  3. Artikel ; Online: Unresolved Gamma-Ray Sky through its Angular Power Spectrum.

    Ackermann, M / Ajello, M / Baldini, L / Ballet, J / Barbiellini, G / Bastieri, D / Bellazzini, R / Bissaldi, E / Blandford, R D / Bonino, R / Bottacini, E / Bregeon, J / Bruel, P / Buehler, R / Burns, E / Buson, S / Cameron, R A / Caputo, R / Caraveo, P A /
    Cavazzuti, E / Chen, S / Chiaro, G / Ciprini, S / Costantin, D / Cuoco, A / Cutini, S / D'Ammando, F / de la Torre Luque, P / de Palma, F / Desai, A / Digel, S W / Di Lalla, N / Di Mauro, M / Di Venere, L / Fana Dirirsa, F / Favuzzi, C / Franckowiak, A / Fukazawa, Y / Funk, S / Fusco, P / Gargano, F / Gasparrini, D / Giglietto, N / Giordano, F / Giroletti, M / Green, D / Grenier, I A / Guillemot, L / Guiriec, S / Horan, D / Jóhannesson, G / Kuss, M / Larsson, S / Latronico, L / Li, J / Liodakis, I / Longo, F / Loparco, F / Lubrano, P / Magill, J D / Maldera, S / Malyshev, D / Manfreda, A / Mazziotta, M N / Mereu, I / Michelson, P F / Mitthumsiri, W / Mizuno, T / Monzani, M E / Morselli, A / Moskalenko, I V / Negro, M / Nuss, E / Orienti, M / Orlando, E / Palatiello, M / Paliya, V S / Paneque, D / Persic, M / Pesce-Rollins, M / Petrosian, V / Piron, F / Porter, T A / Principe, G / Rainò, S / Rando, R / Razzano, M / Razzaque, S / Reimer, A / Reimer, O / Serini, D / Sgrò, C / Siskind, E J / Spandre, G / Spinelli, P / Suson, D J / Tajima, H / Takahashi, M / Thayer, J B / Tibaldo, L / Torres, D F / Troja, E / Venters, T M / Vianello, G / Wood, K / Yassine, M / Zaharijas, G / Ammazzalorso, S / Fornengo, N / Regis, M

    Physical review letters

    2019  Band 121, Heft 24, Seite(n) 241101

    Abstract: The gamma-ray sky has been observed with unprecedented accuracy in the last decade by the Fermi -large area telescope (LAT), allowing us to resolve and understand the high-energy Universe. The nature of the remaining unresolved emission [unresolved gamma- ...

    Abstract The gamma-ray sky has been observed with unprecedented accuracy in the last decade by the Fermi -large area telescope (LAT), allowing us to resolve and understand the high-energy Universe. The nature of the remaining unresolved emission [unresolved gamma-ray background (UGRB)] below the LAT source detection threshold can be uncovered by characterizing the amplitude and angular scale of the UGRB fluctuation field. This Letter presents a measurement of the UGRB autocorrelation angular power spectrum based on eight years of Fermi-LAT Pass 8 data products. The analysis is designed to be robust against contamination from resolved sources and noise systematics. The sensitivity to subthreshold sources is greatly enhanced with respect to previous measurements. We find evidence (with ∼3.7σ significance) that the scenario in which two classes of sources contribute to the UGRB signal is favored over a single class. A double power law with exponential cutoff can explain the anisotropy energy spectrum well, with photon indices of the two populations being 2.55±0.23 and 1.86±0.15.
    Sprache Englisch
    Erscheinungsdatum 2019-01-04
    Erscheinungsland United States
    Dokumenttyp Journal Article
    ZDB-ID 208853-8
    ISSN 1079-7114 ; 0031-9007
    ISSN (online) 1079-7114
    ISSN 0031-9007
    DOI 10.1103/PhysRevLett.121.241101
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  4. Artikel ; Online: First result from the Alpha Magnetic Spectrometer on the International Space Station: precision measurement of the positron fraction in primary cosmic rays of 0.5-350 GeV.

    Aguilar, M / Alberti, G / Alpat, B / Alvino, A / Ambrosi, G / Andeen, K / Anderhub, H / Arruda, L / Azzarello, P / Bachlechner, A / Barao, F / Baret, B / Barrau, A / Barrin, L / Bartoloni, A / Basara, L / Basili, A / Batalha, L / Bates, J /
    Battiston, R / Bazo, J / Becker, R / Becker, U / Behlmann, M / Beischer, B / Berdugo, J / Berges, P / Bertucci, B / Bigongiari, G / Biland, A / Bindi, V / Bizzaglia, S / Boella, G / de Boer, W / Bollweg, K / Bolmont, J / Borgia, B / Borsini, S / Boschini, M J / Boudoul, G / Bourquin, M / Brun, P / Buénerd, M / Burger, J / Burger, W / Cadoux, F / Cai, X D / Capell, M / Casadei, D / Casaus, J / Cascioli, V / Castellini, G / Cernuda, I / Cervelli, F / Chae, M J / Chang, Y H / Chen, A I / Chen, C R / Chen, H / Cheng, G M / Chen, H S / Cheng, L / Chernoplyiokov, N / Chikanian, A / Choumilov, E / Choutko, V / Chung, C H / Clark, C / Clavero, R / Coignet, G / Commichau, V / Consolandi, C / Contin, A / Corti, C / Costado Dios, M T / Coste, B / Crespo, D / Cui, Z / Dai, M / Delgado, C / Della Torre, S / Demirkoz, B / Dennett, P / Derome, L / Di Falco, S / Diao, X H / Diago, A / Djambazov, L / Díaz, C / von Doetinchem, P / Du, W J / Dubois, J M / Duperay, R / Duranti, M / D'Urso, D / Egorov, A / Eline, A / Eppling, F J / Eronen, T / van Es, J / Esser, H / Falvard, A / Fiandrini, E / Fiasson, A / Finch, E / Fisher, P / Flood, K / Foglio, R / Fohey, M / Fopp, S / Fouque, N / Galaktionov, Y / Gallilee, M / Gallin-Martel, L / Gallucci, G / García, B / García, J / García-López, R / García-Tabares, L / Gargiulo, C / Gast, H / Gebauer, I / Gentile, S / Gervasi, M / Gillard, W / Giovacchini, F / Girard, L / Goglov, P / Gong, J / Goy-Henningsen, C / Grandi, D / Graziani, M / Grechko, A / Gross, A / Guerri, I / de la Guía, C / Guo, K H / Habiby, M / Haino, S / Hauler, F / He, Z H / Heil, M / Heilig, J / Hermel, R / Hofer, H / Huang, Z C / Hungerford, W / Incagli, M / Ionica, M / Jacholkowska, A / Jang, W Y / Jinchi, H / Jongmanns, M / Journet, L / Jungermann, L / Karpinski, W / Kim, G N / Kim, K S / Kirn, Th / Kossakowski, R / Koulemzine, A / Kounina, O / Kounine, A / Koutsenko, V / Krafczyk, M S / Laudi, E / Laurenti, G / Lauritzen, C / Lebedev, A / Lee, M W / Lee, S C / Leluc, C / León Vargas, H / Lepareur, V / Li, J Q / Li, Q / Li, T X / Li, W / Li, Z H / Lipari, P / Lin, C H / Liu, D / Liu, H / Lomtadze, T / Lu, Y S / Lucidi, S / Lübelsmeyer, K / Luo, J Z / Lustermann, W / Lv, S / Madsen, J / Majka, R / Malinin, A / Mañá, C / Marín, J / Martin, T / Martínez, G / Masciocchi, F / Masi, N / Maurin, D / McInturff, A / McIntyre, P / Menchaca-Rocha, A / Meng, Q / Menichelli, M / Mereu, I / Millinger, M / Mo, D C / Molina, M / Mott, P / Mujunen, A / Natale, S / Nemeth, P / Ni, J Q / Nikonov, N / Nozzoli, F / Nunes, P / Obermeier, A / Oh, S / Oliva, A / Palmonari, F / Palomares, C / Paniccia, M / Papi, A / Park, W H / Pauluzzi, M / Pauss, F / Pauw, A / Pedreschi, E / Pensotti, S / Pereira, R / Perrin, E / Pessina, G / Pierschel, G / Pilo, F / Piluso, A / Pizzolotto, C / Plyaskin, V / Pochon, J / Pohl, M / Poireau, V / Porter, S / Pouxe, J / Putze, A / Quadrani, L / Qi, X N / Rancoita, P G / Rapin, D / Ren, Z L / Ricol, J S / Riihonen, E / Rodríguez, I / Roeser, U / Rosier-Lees, S / Rossi, L / Rozhkov, A / Rozza, D / Sabellek, A / Sagdeev, R / Sandweiss, J / Santos, B / Saouter, P / Sarchioni, M / Schael, S / Schinzel, D / Schmanau, M / Schwering, G / Schulz von Dratzig, A / Scolieri, G / Seo, E S / Shan, B S / Shi, J Y / Shi, Y M / Siedenburg, T / Siedling, R / Son, D / Spada, F / Spinella, F / Steuer, M / Stiff, K / Sun, W / Sun, W H / Sun, X H / Tacconi, M / Tang, C P / Tang, X W / Tang, Z C / Tao, L / Tassan-Viol, J / Ting, Samuel C C / Ting, S M / Titus, C / Tomassetti, N / Toral, F / Torsti, J / Tsai, J R / Tutt, J C / Ulbricht, J / Urban, T / Vagelli, V / Valente, E / Vannini, C / Valtonen, E / Vargas Trevino, M / Vaurynovich, S / Vecchi, M / Vergain, M / Verlaat, B / Vescovi, C / Vialle, J P / Viertel, G / Volpini, G / Wang, D / Wang, N H / Wang, Q L / Wang, R S / Wang, X / Wang, Z X / Wallraff, W / Weng, Z L / Willenbrock, M / Wlochal, M / Wu, H / Wu, K Y / Wu, Z S / Xiao, W J / Xie, S / Xiong, R Q / Xin, G M / Xu, N S / Xu, W / Yan, Q / Yang, J / Yang, M / Ye, Q H / Yi, H / Yu, Y J / Yu, Z Q / Zeissler, S / Zhang, J G / Zhang, Z / Zhang, M M / Zheng, Z M / Zhuang, H L / Zhukov, V / Zichichi, A / Zuccon, P / Zurbach, C

    Physical review letters

    2013  Band 110, Heft 14, Seite(n) 141102

    Abstract: A precision measurement by the Alpha Magnetic Spectrometer on the International Space Station of the positron fraction in primary cosmic rays in the energy range from 0.5 to 350 GeV based on 6.8 × 10(6) positron and electron events is presented. The very ...

    Abstract A precision measurement by the Alpha Magnetic Spectrometer on the International Space Station of the positron fraction in primary cosmic rays in the energy range from 0.5 to 350 GeV based on 6.8 × 10(6) positron and electron events is presented. The very accurate data show that the positron fraction is steadily increasing from 10 to ∼ 250  GeV, but, from 20 to 250 GeV, the slope decreases by an order of magnitude. The positron fraction spectrum shows no fine structure, and the positron to electron ratio shows no observable anisotropy. Together, these features show the existence of new physical phenomena.
    Sprache Englisch
    Erscheinungsdatum 2013-04-05
    Erscheinungsland United States
    Dokumenttyp Journal Article
    ZDB-ID 208853-8
    ISSN 1079-7114 ; 0031-9007
    ISSN (online) 1079-7114
    ISSN 0031-9007
    DOI 10.1103/PhysRevLett.110.141102
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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