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  1. AU="Mohammed A. S. Abourehab"
  2. AU="Basa, S."
  3. AU="Rohner, Eliane"
  4. AU="Abu-Mahfouz, Adnan M"
  5. AU="Falanti, Andrea"
  6. AU="Yujing Dang"
  7. AU="Clare Duncan"
  8. AU="Calvo Soto, Andrea Patricia"
  9. AU="Joanna I. Olszewska"
  10. AU="Francesco Cavallieri"
  11. AU="Betaieb, Ehssen"
  12. AU="Fan, Xiaoyu"
  13. AU="Riveros-Magaña, Alma Rocío"
  14. AU="Zhang, Wei-Fen"
  15. AU="Ciuca, Catrinel"
  16. AU="Friend, James R"
  17. AU="Colin R. Jackson"
  18. AU="Messina, Claudia"
  19. AU="Faircloth, Chelsey"
  20. AU="Md. Zabirul Islam" AU="Md. Zabirul Islam"
  21. AU="Butcher, Xochitl"
  22. AU="Espay, Alberto J."

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  1. Artikel ; Online: Drug Polymeric Carrier of Aceclofenac Based on Amphiphilic Chitosan Micelles

    Noof A. Alenazi / Mohammed G. Bokhari / Mohammed A.S. Abourehab / Mostafa R. Abukhadra

    ACS Omega, Vol 8, Iss 50, Pp 48145-

    2023  Band 48158

    Schlagwörter Chemistry ; QD1-999
    Sprache Englisch
    Erscheinungsdatum 2023-12-01T00:00:00Z
    Verlag American Chemical Society
    Dokumenttyp Artikel ; Online
    Datenquelle BASE - Bielefeld Academic Search Engine (Lebenswissenschaftliche Auswahl)

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  2. Artikel ; Online: In Silico Targeting of Fascin Protein for Cancer Therapy

    Heba H. A. Hassan / Muhammad I. Ismail / Mohammed A. S. Abourehab / Frank M. Boeckler / Tamer M. Ibrahim / Reem K. Arafa

    Molecules, Vol 28, Iss 1296, p

    Benchmarking, Virtual Screening and Molecular Dynamics Approaches

    2023  Band 1296

    Abstract: Fascin is an actin-bundling protein overexpressed in various invasive metastatic carcinomas through promoting cell migration and invasion. Therefore, blocking Fascin binding sites is considered a vital target for antimetastatic drugs. This inspired us to ...

    Abstract Fascin is an actin-bundling protein overexpressed in various invasive metastatic carcinomas through promoting cell migration and invasion. Therefore, blocking Fascin binding sites is considered a vital target for antimetastatic drugs. This inspired us to find new Fascin binding site blockers. First, we built an active compound set by collecting reported small molecules binding to Fascin’s binding site 2. Consequently, a high-quality decoys set was generated employing DEKOIS 2.0 protocol to be applied in conducting the benchmarking analysis against the selected Fascin structures. Four docking programs, MOE, AutoDock Vina, VinaXB, and PLANTS were evaluated in the benchmarking study. All tools indicated better-than-random performance reflected by their pROC-AUC values against the Fascin crystal structure (PDB: ID 6I18). Interestingly, PLANTS exhibited the best screening performance and recognized potent actives at early enrichment. Accordingly, PLANTS was utilized in the prospective virtual screening effort for repurposing FDA-approved drugs (DrugBank database) and natural products (NANPDB). Further assessment via molecular dynamics simulations for 100 ns endorsed Remdesivir (DrugBank) and NANPDB3 (NANPDB) as potential binders to Fascin binding site 2. In conclusion, this study delivers a model for implementing a customized DEKOIS 2.0 benchmark set to enhance the VS success rate against new potential targets for cancer therapies.
    Schlagwörter cancer ; Fascin ; docking ; virtual screening (VS) ; benchmarking ; DEKOIS 2.0 ; Organic chemistry ; QD241-441
    Thema/Rubrik (Code) 540 ; 500
    Sprache Englisch
    Erscheinungsdatum 2023-01-01T00:00:00Z
    Verlag MDPI AG
    Dokumenttyp Artikel ; Online
    Datenquelle BASE - Bielefeld Academic Search Engine (Lebenswissenschaftliche Auswahl)

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  3. Artikel ; Online: Globally Approved EGFR Inhibitors

    Mohammed A. S. Abourehab / Alaa M. Alqahtani / Bahaa G. M. Youssif / Ahmed M. Gouda

    Molecules, Vol 26, Iss 6677, p

    Insights into Their Syntheses, Target Kinases, Biological Activities, Receptor Interactions, and Metabolism

    2021  Band 6677

    Abstract: Targeting the EGFR with small-molecule inhibitors is a confirmed valid strategy in cancer therapy. Since the FDA approval of the first EGFR-TKI, erlotinib, great efforts have been devoted to the discovery of new potent inhibitors. Until now, fourteen ... ...

    Abstract Targeting the EGFR with small-molecule inhibitors is a confirmed valid strategy in cancer therapy. Since the FDA approval of the first EGFR-TKI, erlotinib, great efforts have been devoted to the discovery of new potent inhibitors. Until now, fourteen EGFR small-molecule inhibitors have been globally approved for the treatment of different types of cancers. Although these drugs showed high efficacy in cancer therapy, EGFR mutations have emerged as a big challenge for these drugs. In this review, we focus on the EGFR small-molecule inhibitors that have been approved for clinical uses in cancer therapy. These drugs are classified based on their chemical structures, target kinases, and pharmacological uses. The synthetic routes of these drugs are also discussed. The crystal structures of these drugs with their target kinases are also summarized and their bonding modes and interactions are visualized. Based on their binding interactions with the EGFR, these drugs are also classified into reversible and irreversible inhibitors. The cytotoxicity of these drugs against different types of cancer cell lines is also summarized. In addition, the proposed metabolic pathways and metabolites of the fourteen drugs are discussed, with a primary focus on the active and reactive metabolites. Taken together, this review highlights the syntheses, target kinases, crystal structures, binding interactions, cytotoxicity, and metabolism of the fourteen globally approved EGFR inhibitors. These data should greatly help in the design of new EGFR inhibitors.
    Schlagwörter EGFR ; kinase inhibitor ; synthesis ; anticancer ; metabolism ; Organic chemistry ; QD241-441
    Thema/Rubrik (Code) 540
    Sprache Englisch
    Erscheinungsdatum 2021-11-01T00:00:00Z
    Verlag MDPI AG
    Dokumenttyp Artikel ; Online
    Datenquelle BASE - Bielefeld Academic Search Engine (Lebenswissenschaftliche Auswahl)

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  4. Artikel ; Online: Pyrrolizine/indolizine-cinnamaldehyde Schiff bases

    Mohammed A.S. Abourehab / Alaa M. Alqahtani / Faisal A. Almalki / Ashraf N. Abdalla / Ahmed M. Gouda

    European Journal of Medicinal Chemistry Reports, Vol 4, Iss , Pp 100036- (2022)

    Design, synthesis, biological evaluation, ADME, and molecular docking study

    2022  

    Abstract: In the present study, two new Schiff bases 10a,b were synthesized by the condensation of 9a,b with cinnamaldehyde. The chemical structures of 10a,b were confirmed using spectral (IR, mass, 1H NMR, 13C NMR, and DEPT C135) and elemental analysis. The ... ...

    Abstract In the present study, two new Schiff bases 10a,b were synthesized by the condensation of 9a,b with cinnamaldehyde. The chemical structures of 10a,b were confirmed using spectral (IR, mass, 1H NMR, 13C NMR, and DEPT C135) and elemental analysis. The effect of 10a,b on the viability of five (SKOV-3, HeLa, HepG2, MCF-7, and SW620) cancer cell lines was evaluated, where MCF-7 cell line was the most sensitive. In addition, compounds 10a,b exhibited their cytotoxic activity against MCF-7 cells at IC50 values of 8.06 and 0.58 μM, respectively, compared to doxorubicin (IC50 = 2.07 μM). Cell cycle analysis of MCF-7 cells treated with 10a revealed a significant increase (18 folds) of cell cycle at the pe-G1 phase, while 10b increased cell population at both pre-G1 and G2/M phase (11.5 and 2.5 folds increase, respectively). In addition, 10a induced 33 folds increase of combined early and late apoptotic cells, compared with 17 folds increase of combined apoptosis in MCF7 cells by 10b. Computational studies including target prediction, docking, and ADME studies were performed for 10a,b. The results revealed higher binding free energy for 10b toward COX-2 and p38 MAP kinase compared to 10a. To sum up, the results above suggested that 10b could be evaluated in future studies as a potential cytotoxic and apoptotic agent.
    Schlagwörter Pyrrolizine ; Indolizine ; Cytotoxicity ; Cell cycle ; Apoptosis ; Pharmacy and materia medica ; RS1-441 ; Other systems of medicine ; RZ201-999
    Thema/Rubrik (Code) 571 ; 500
    Sprache Englisch
    Erscheinungsdatum 2022-04-01T00:00:00Z
    Verlag Elsevier
    Dokumenttyp Artikel ; Online
    Datenquelle BASE - Bielefeld Academic Search Engine (Lebenswissenschaftliche Auswahl)

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  5. Artikel ; Online: Mitochondrial Regulation of the Hypoxia-Inducible Factor in the Development of Pulmonary Hypertension

    Esraa M. Zeidan / Mohammad Akbar Hossain / Mahmoud El-Daly / Mohammed A. S. Abourehab / Mohamed M. A. Khalifa / Ashraf Taye

    Journal of Clinical Medicine, Vol 11, Iss 5219, p

    2022  Band 5219

    Abstract: Pulmonary hypertension (PH) is a severe progressive lung disorder characterized by pulmonary vasoconstriction and vascular remodeling, culminating in right-sided heart failure and increased mortality. Data from animal models and human subjects ... ...

    Abstract Pulmonary hypertension (PH) is a severe progressive lung disorder characterized by pulmonary vasoconstriction and vascular remodeling, culminating in right-sided heart failure and increased mortality. Data from animal models and human subjects demonstrated that hypoxia-inducible factor (HIF)-related signaling is essential in the progression of PH. This review summarizes the regulatory pathways and mechanisms of HIF-mediated signaling, emphasizing the role of mitochondria in HIF regulation and PH pathogenesis. We also try to determine the potential to therapeutically target the components of the HIF system for the management of PH.
    Schlagwörter HIF ; hypoxia-inducible factor ; mitochondria ; pulmonary hypertension pathogenesis ; Medicine ; R
    Sprache Englisch
    Erscheinungsdatum 2022-09-01T00:00:00Z
    Verlag MDPI AG
    Dokumenttyp Artikel ; Online
    Datenquelle BASE - Bielefeld Academic Search Engine (Lebenswissenschaftliche Auswahl)

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  6. Artikel ; Online: Virtual Screening of Repurposed Drugs as Potential Spike Protein Inhibitors of Different SARS-CoV-2 Variants

    Ahmad F. Eweas / Hosam-Eldin H. Osman / Ibrahim A. Naguib / Mohammed A. S. Abourehab / Ahmed S. Abdel-Moneim

    Current Issues in Molecular Biology, Vol 44, Iss 7, Pp 3018-

    Molecular Docking Study

    2022  Band 3029

    Abstract: Like most of the RNA viruses, SARS-CoV-2 continuously mutates. Although many mutations have an insignificant impact on the virus properties, mutations in the surface protein, especially those in the receptor-binding domain, may lead to immune or vaccine ... ...

    Abstract Like most of the RNA viruses, SARS-CoV-2 continuously mutates. Although many mutations have an insignificant impact on the virus properties, mutations in the surface protein, especially those in the receptor-binding domain, may lead to immune or vaccine escape variants, or altered binding activities to both the cell receptor and the drugs targeting such a protein. The current study intended to assess the ability of different variants of interest (VOIs) and variants of concern (VOCs) of SARS-CoV-2 for their affinities of binding to different repurposed drugs. Seven FDA approved drugs, namely, camostat, nafamostat mesylate, fenofibrate, umifenovir, nelfinavir, cefoperazone and ceftazidime, were selected based on their reported in vitro and clinical activities against SARA-CoV-2. The S1 protein subunit from eleven different variants, including the latest highly contiguous omicron variant, were used as targets for the docking study. The docking results revealed that all tested drugs possess moderate to high binding energies to the receptor-binding domain (RBD) of the S1 protein for all different variants. Cefoperazone was found to possess the highest binding energy to the RBD of the S1 protein of all the eleven variants. Ceftazidime was the second-best drug in terms of binding affinity towards the S1 RBD of the investigated variants. On the other hand, fenofibrate showed the least binding affinity towards the RBD of the S1 protein of all eleven variants. The binding affinities of anti-spike drugs varied among different variants. Most of the interacting amino acid residues of the receptor fall within the RBD (438–506).
    Schlagwörter SARS-CoV-2 ; VOC ; VOI ; COVID-19 ; variant ; omicron ; Biology (General) ; QH301-705.5
    Thema/Rubrik (Code) 500
    Sprache Englisch
    Erscheinungsdatum 2022-07-01T00:00:00Z
    Verlag MDPI AG
    Dokumenttyp Artikel ; Online
    Datenquelle BASE - Bielefeld Academic Search Engine (Lebenswissenschaftliche Auswahl)

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  7. Artikel ; Online: A Novel Curcumin Arginine Salt

    Adel Al Fatease / Mai E. Shoman / Mohammed A. S. Abourehab / Heba A. Abou-Taleb / Hamdy Abdelkader

    Molecules, Vol 28, Iss 1, p

    A Solution for Poor Solubility and Potential Anticancer Activities

    2022  Band 262

    Abstract: Curcumin is a natural polyphenolic compound with well-known anticancer properties. Poor solubility and permeability hamper its use as an anticancer pharmaceutical product. In this study, L-arginine, a basic amino acid and a small hydrophilic molecule, ... ...

    Abstract Curcumin is a natural polyphenolic compound with well-known anticancer properties. Poor solubility and permeability hamper its use as an anticancer pharmaceutical product. In this study, L-arginine, a basic amino acid and a small hydrophilic molecule, was utilized to form a salt with the weak acid curcumin to enhance its solubility and potentiate the anticancer activities of curcumin. Two methods were adopted for the preparation of curcumin: L-arginine salt, namely, physical mixing and coprecipitation. The ion pair or salt was characterized for docking, solubility, DSC, FTIR, XRD, in vitro dissolution, and anticancer activities using MCF7 cell lines. The molecular docking suggested a salt/ion-pair complex between curcumin and L-arginine. Curcumin solubility was increased 335- and 440-fold by curcumin in L-arginine, physical, and co-precipitated mixtures, respectively. Thermal and spectral analyses supported the molecular docking and formation of a salt/ion pair between curcumin and L-arginine. The cytotoxicity of curcumin L-arginine salt significantly improved ( p < 0.05) by 1.4-fold, as evidenced by the calculated IC 50% , which was comparable to Taxol (the standard anticancer drug but with common side effects).
    Schlagwörter curcumin ; L-arginine ; cytotoxicity ; breast cancer ; Organic chemistry ; QD241-441
    Thema/Rubrik (Code) 571
    Sprache Englisch
    Erscheinungsdatum 2022-12-01T00:00:00Z
    Verlag MDPI AG
    Dokumenttyp Artikel ; Online
    Datenquelle BASE - Bielefeld Academic Search Engine (Lebenswissenschaftliche Auswahl)

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  8. Artikel ; Online: Fabrication and Characterization of Dextranase Nano-Entrapped Enzymes in Polymeric Particles Using a Novel Ultrasonication–Microwave Approach

    Mohanad Bashari / Hani Ahmed / Ayman Balla Mustafa / Asad Riaz / Jinpeng Wang / Salina Yahya Saddick / Abdulkader Shaikh Omar / Mohamed Afifi / Ammar Al-Farga / Lulwah Zeyad AlJumaiah / Mohammed A. S. Abourehab / Amany Belal / Mohamed Y. Zaky

    Catalysts, Vol 13, Iss 125, p

    2023  Band 125

    Abstract: In the current study, a novel method to improve the nano-entrapment of enzymes into Ca-alginate gel was investigated to determine the synergistic effects of ultrasound combined with microwave shock (UMS). The effects of UMS treatment on dextranase ... ...

    Abstract In the current study, a novel method to improve the nano-entrapment of enzymes into Ca-alginate gel was investigated to determine the synergistic effects of ultrasound combined with microwave shock (UMS). The effects of UMS treatment on dextranase enzymes’ loading effectiveness (LE) and immobilization yield (IY) were investigated. By using FT-IR spectra and SEM, the microstructure of the immobilized enzyme (IE) was characterized. Additionally, the free enzyme was used as a control to compare the reusability and enzyme-kinetics characteristics of IEs produced with and without UMS treatments. The results demonstrated that the highest LE and IY were obtained when the IE was produced with a US of 40 W at 25 kHz for 15 min combined with an MS of 60 W at a shock rate of 20 s/min for 20 min, increasing the LE and the IY by 97.32 and 78.25%, respectively, when compared with an immobilized enzyme prepared without UMS treatment. In comparison with the control, UMS treatment dramatically raised the Vmax, KM, catalytic, and specificity constant values for the IE. The outcomes suggested that a microwave shock and ultrasound combination would be an efficient way to improve the immobilization of enzymes in biopolymer gel.
    Schlagwörter nano-entrapment ; ultrasound ; microwave shock ; immobilization ; dextranase ; Ca-alginate nanoparticles ; Chemical technology ; TP1-1185 ; Chemistry ; QD1-999
    Thema/Rubrik (Code) 540 ; 660
    Sprache Englisch
    Erscheinungsdatum 2023-01-01T00:00:00Z
    Verlag MDPI AG
    Dokumenttyp Artikel ; Online
    Datenquelle BASE - Bielefeld Academic Search Engine (Lebenswissenschaftliche Auswahl)

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  9. Artikel ; Online: Exploring Probenecid Derived 1,3,4-Oxadiazole-Phthalimide Hybrid as α-Amylase Inhibitor

    Bilal Ahmad Khan / Syeda Shamila Hamdani / Muhammad Khalid / Muhammad Ashfaq / Khurram Shahzad Munawar / Muhammad Nawaz Tahir / Ataualpa A. C. Braga / Ahmed M. Shawky / Alaa M. Alqahtani / Mohammed A. S. Abourehab / Gamal A. Gabr / Mahmoud A. A. Ibrahim / Peter A. Sidhom

    Pharmaceuticals, Vol 16, Iss 424, p

    Synthesis, Structural Investigation, and Molecular Modeling

    2023  Band 424

    Abstract: 1,3,4-Oxadiazole moiety is a crucial pharmacophore in many biologically active compounds. In a typical synthesis, probenecid was subjected to a sequence of reactions to obtain a 1,3,4-oxadiazole–phthalimide hybrid ( PESMP ) in high yields. The NMR ( 1 H ... ...

    Abstract 1,3,4-Oxadiazole moiety is a crucial pharmacophore in many biologically active compounds. In a typical synthesis, probenecid was subjected to a sequence of reactions to obtain a 1,3,4-oxadiazole–phthalimide hybrid ( PESMP ) in high yields. The NMR ( 1 H and 13 C) spectroscopic analysis initially confirmed the structure of PESMP . Further spectral aspects were validated based on a single-crystal XRD analysis. Experimental findings were confirmed afterwards by executing a Hirshfeld surface (HS) analysis and quantum mechanical computations. The HS analysis showed the role of the π⋯π stacking interactions in PESMP . PESMP was found to have a high stability and lower reactivity in terms of global reactivity parameters. α-Amylase inhibition studies revealed that the PESMP was a good inhibitor of α-amylase with an s value of 10.60 ± 0.16 μg/mL compared with that of standard acarbose (IC 50 = 8.80 ± 0.21 μg/mL). Molecular docking was also utilized to reveal the binding pose and features of PESMP against the α-amylase enzyme. Via docking computations, the high potency of PESMP and acarbose towards the α-amylase enzyme was unveiled and confirmed by docking scores of −7.4 and −9.4 kcal/mol, respectively. These findings shine a new light on the potential of PESMP compounds as α-amylase inhibitors.
    Schlagwörter oxadiazole ; α-amylase inhibition ; X-ray diffraction ; molecular docking ; DFT calculations ; Medicine ; R ; Pharmacy and materia medica ; RS1-441
    Thema/Rubrik (Code) 540
    Sprache Englisch
    Erscheinungsdatum 2023-03-01T00:00:00Z
    Verlag MDPI AG
    Dokumenttyp Artikel ; Online
    Datenquelle BASE - Bielefeld Academic Search Engine (Lebenswissenschaftliche Auswahl)

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  10. Artikel ; Online: Computational simulation and target prediction studies of solubility optimization of decitabine through supercritical solvent

    Saad M. Alshahrani / Bjad K. Almutairy / Munerah M. Alfadhel / Amany Belal / Mohammed A. S. Abourehab / Ahmed Al. Saqr / Abdullah S. Alshetaili / Kumar Venkatesan / Amal M. Alsubaiyel / Mahboubeh Pishnamazi

    Scientific Reports, Vol 12, Iss 1, Pp 1-

    2022  Band 12

    Abstract: Abstract Computational analysis of drug solubility was carried out using machine learning approach. The solubility of Decitabine as model drug in supercritical CO2 was studied as function of pressure and temperature to assess the feasibility of that for ... ...

    Abstract Abstract Computational analysis of drug solubility was carried out using machine learning approach. The solubility of Decitabine as model drug in supercritical CO2 was studied as function of pressure and temperature to assess the feasibility of that for production of nanomedicine to enhance the solubility. The data was collected for solubility optimization of Decitabine at the temperature 308–338 K, and pressure 120–400 bar used as the inputs to the machine learning models. A dataset of 32 data points and two inputs (P and T) have been applied to optimize the solubility. The only output is Y = solubility, which is Decitabine mole fraction solubility in the solvent. The developed models are three models including Kernel Ridge Regression (KRR), Decision tree Regression (DTR), and Gaussian process (GPR), which are used for the first time as a novel model. These models are optimized using their hyper-parameters tuning and then assessed using standard metrics, which shows R2-score, KRR, DTR, and GPR equal to 0.806, 0.891, and 0.998. Also, the MAE metric shows 1.08E−04, 7.40E−05, and 9.73E−06 error rates in the same order. The other metric is MAPE, in which the KRR error rate is 4.64E−01, DTR shows an error rate equal to 1.63E−01, and GPR as the best mode illustrates 5.06E−02. Finally, analysis using the best model (GPR) reveals that increasing both inputs results in an increase in the solubility of Decitabine. The optimal values are (P = 400, T = 3.38E + 02, Y = 1.07E−03).
    Schlagwörter Medicine ; R ; Science ; Q
    Thema/Rubrik (Code) 660
    Sprache Englisch
    Erscheinungsdatum 2022-11-01T00:00:00Z
    Verlag Nature Portfolio
    Dokumenttyp Artikel ; Online
    Datenquelle BASE - Bielefeld Academic Search Engine (Lebenswissenschaftliche Auswahl)

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