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  1. Article ; Online: Ecosystem Capacity for Microbial Biodegradation of Munitions Compounds and Phenanthrene in Three Coastal Waterways in North Carolina, United States.

    Montgomery, Michael T / Boyd, Thomas J / Hall, Nathan S / Paerl, Hans W / Osburn, Christopher L

    ACS omega

    2020  Volume 5, Issue 13, Page(s) 7326–7341

    Abstract: Munitions compounds (i.e., 2,4,6-trinitrotoluene (TNT), octahy-dro-1,3,5,7-tetranitro-1,3,5,7-tetrazocin (HMX), and hexadydro-1,3,5-trinitro-1,3,5-triazin (RDX), also called energetics) were originally believed to be recalcitrant to microbial ... ...

    Abstract Munitions compounds (i.e., 2,4,6-trinitrotoluene (TNT), octahy-dro-1,3,5,7-tetranitro-1,3,5,7-tetrazocin (HMX), and hexadydro-1,3,5-trinitro-1,3,5-triazin (RDX), also called energetics) were originally believed to be recalcitrant to microbial biodegradation based on historical groundwater chemical attenuation data and laboratory culture work. More recently, it has been established that natural bacterial assemblages in coastal waters and sediment can rapidly metabolize these organic nitrogen sources and even incorporate their carbon and nitrogen into bacterial biomass. Here, we report on the capacity of natural microbial assemblages in three coastal North Carolina (United States) estuaries to metabolize energetics and phenanthrene (PHE), a proxy for terrestrial aromatic compounds. Microbial assemblages generally had the highest ecosystem capacity (mass of the compound mineralized per average estuarine residence time) for HMX (21-5463 kg) > RDX (1.4-5821 kg) ≫ PHE (0.29-660 kg) > TNT (0.25-451 kg). Increasing antecedent precipitation tended to decrease the ecosystem capacity to mineralize TNT in the Newport River Estuary, and PHE and TNT mineralization were often highest with increasing salinity. There was some evidence from the New River Estuary that increased N-demand (due to a phytoplankton bloom) is associated with increased energetic mineralization rates. Using this type of analysis to determine the ecosystem capacity to metabolize energetics can explain why these compounds are rarely detected in seawater and marine sediment, despite the known presence of unexploded ordnance or recent use in military training exercises. Overall, measuring the ecosystem capacity may help predict the effects of climate change (warming and altered precipitation patterns) and other perturbations on exotic compound fate and transport within ecosystems and provide critical information for managers and decision-makers to develop management strategies based on these changes.
    Language English
    Publishing date 2020-03-27
    Publishing country United States
    Document type Journal Article
    ISSN 2470-1343
    ISSN (online) 2470-1343
    DOI 10.1021/acsomega.9b04188
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Atopic dermatitis complicated by recurrent eczema herpeticum is characterized by multiple, concurrent epidermal inflammatory endotypes.

    Jackson, Nathan D / Dyjack, Nathan / Goleva, Elena / Bin, Lianghua / Montgomery, Michael T / Rios, Cydney / Everman, Jamie L / Taylor, Patricia / Bronchick, Caroline / Richers, Brittany N / Leung, Donald Y / Seibold, Max A

    bioRxiv : the preprint server for biology

    2023  

    Abstract: Background: A subgroup of atopic dermatitis (AD) patients suffer from recurrent, disseminated herpes simplex virus (HSV) skin infections, termed eczema herpeticum (EH), which can be life-threatening and contribute to AD morbidity. The pathobiology ... ...

    Abstract Background: A subgroup of atopic dermatitis (AD) patients suffer from recurrent, disseminated herpes simplex virus (HSV) skin infections, termed eczema herpeticum (EH), which can be life-threatening and contribute to AD morbidity. The pathobiology underlying ADEH is unknown.
    Objective: To determine transcriptional mechanisms of skin and immune system pathobiology that underlie ADEH disease.
    Methods: We performed whole transcriptome RNA-sequencing of non-lesional skin samples (epidermis, dermis) of AD patients with (ADEH
    Results: ADEH
    Conclusions: ADEH
    Key messages: AD patients with a history of recurrent EH exhibit molecular skin pathobiology that is similar in form, but more severe in degree, than in AD patients without this complication. Non-lesional skin of ADEH
    Capsule summary: AD patients with a history of recurrent disseminated HSV-1 skin infections form a unique molecular skin endotype group that concurrently exhibits type 2 cytokine, interferon, and IL-36γ-driven skin inflammation, accompanied by dysregulation in expression of epidermal differentiation complex genes involved in barrier function, inflammation, and antimicrobial activity.
    Language English
    Publishing date 2023-02-28
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2023.02.27.530316
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Rewriting regulatory DNA to dissect and reprogram gene expression.

    Martyn, Gabriella E / Montgomery, Michael T / Jones, Hank / Guo, Katherine / Doughty, Benjamin R / Linder, Johannes / Chen, Ziwei / Cochran, Kelly / Lawrence, Kathryn A / Munson, Glen / Pampari, Anusri / Fulco, Charles P / Kelley, David R / Lander, Eric S / Kundaje, Anshul / Engreitz, Jesse M

    bioRxiv : the preprint server for biology

    2023  

    Abstract: Regulatory DNA sequences within enhancers and promoters bind transcription factors to encode cell type-specific patterns of gene expression. However, the regulatory effects and programmability of such DNA sequences remain difficult to map or predict ... ...

    Abstract Regulatory DNA sequences within enhancers and promoters bind transcription factors to encode cell type-specific patterns of gene expression. However, the regulatory effects and programmability of such DNA sequences remain difficult to map or predict because we have lacked scalable methods to precisely edit regulatory DNA and quantify the effects in an endogenous genomic context. Here we present an approach to measure the quantitative effects of hundreds of designed DNA sequence variants on gene expression, by combining pooled CRISPR prime editing with RNA fluorescence
    Language English
    Publishing date 2023-12-21
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2023.12.20.572268
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Heterotrophic bacterial production measured on soil microaggregates sampled using a Biological Laser Printer

    Montgomery, Michael T / Bradley R. Ringeisen / Joel D. Gaston / Preston A. Fulmer / Russell K. Pirlo

    Soil biology & biochemistry. 2019 Apr., v. 131

    2019  

    Abstract: Although routinely measured in aquatic systems over the last 30 years, heterotrophic bacterial production (3H-leucine method) has only more recently been measured in terrestrial ecosystems to elucidate the role of soil biogeochemical processes in global ... ...

    Abstract Although routinely measured in aquatic systems over the last 30 years, heterotrophic bacterial production (3H-leucine method) has only more recently been measured in terrestrial ecosystems to elucidate the role of soil biogeochemical processes in global carbon cycles and climate change. Studying bacterial metabolism at the microaggregate scale (100–300 μm) may unmask important microscale biogeochemical relationships amongst bacterial processes and the surrounding soil. Biological laser printer technology was used to sample soil core sections (ca. one mm thick) into ca. 100–300 μm microaggregates. Bacterial production was measured on collections of five microaggregates each (180 samples over 5 cm depth profile) by suspending microaggregates into filtered rainwater with 3H-leucine and incubating for 4 h. Bacterial production varied by over two orders of magnitude amongst groups of five microaggregates collected over the same millimeter scale core slice. Range for all measurements along the core was below detection (0.005) to 897 fg C aggregate d−1. As expected, variability amongst adjacent (within 2 mm of each other) microaggregates groups generally decreased with depth along with the total magnitude of bacterial production rate. Variation in bacterial production at the microaggregate scale was greater than that seen at larger scale (ca. 50 mg; theoretical 3200 microaggregates) sampling of the same core. This is the first demonstration of using a biological laser printer for fine scale sampling of soil core slices and subsequent measurement of bacterial metabolism.
    Keywords biogeochemistry ; climate change ; metabolism ; microaggregates ; rain ; terrestrial ecosystems
    Language English
    Dates of publication 2019-04
    Size p. 176-181.
    Publishing place Elsevier Ltd
    Document type Article
    ZDB-ID 280810-9
    ISSN 0038-0717
    ISSN 0038-0717
    DOI 10.1016/j.soilbio.2019.01.003
    Database NAL-Catalogue (AGRICOLA)

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  5. Article: On the secondary eyewall formation of Hurricane Edouard (2014).

    Abarca, Sergio F / Montgomery, Michael T / Braun, Scott A / Dunion, Jason

    Monthly weather review

    2016  Volume 144, Issue 9, Page(s) 3321–3331

    Abstract: A first observationally-based estimation of departures from gradient wind balance during secondary eyewall formation is presented. The study is based on the Atlantic Hurricane Edouard (2014). This storm was observed during the National Aeronautics and ... ...

    Abstract A first observationally-based estimation of departures from gradient wind balance during secondary eyewall formation is presented. The study is based on the Atlantic Hurricane Edouard (2014). This storm was observed during the National Aeronautics and Space Administration's (NASA) Hurricane and Severe Storm Sentinel (HS3) experiment, a field campaign conducted in collaboration with the National Oceanic and Atmospheric Administration (NOAA). A total of 135 dropsondes are analyzed in two separate time periods: one named the
    Language English
    Publishing date 2016-08-22
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2033056-X
    ISSN 1520-0493 ; 0027-0644
    ISSN (online) 1520-0493
    ISSN 0027-0644
    DOI 10.1175/MWR-D-15-0421.1
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Measuring Carbon-based Contaminant Mineralization Using Combined CO2 Flux and Radiocarbon Analyses.

    Boyd, Thomas J / Montgomery, Michael T / Cuenca, Richard H / Hagimoto, Yutaka

    Journal of visualized experiments : JoVE

    2016  , Issue 116

    Abstract: A method is described which uses the absence of radiocarbon in industrial chemicals and fuels made from petroleum feedstocks which frequently contaminate the environment. This radiocarbon signal - or rather the absence of signal - is evenly distributed ... ...

    Abstract A method is described which uses the absence of radiocarbon in industrial chemicals and fuels made from petroleum feedstocks which frequently contaminate the environment. This radiocarbon signal - or rather the absence of signal - is evenly distributed throughout a contaminant source pool (unlike an added tracer) and is not impacted by biological, chemical or physical processes (e.g., the
    MeSH term(s) Carbon ; Carbon Dioxide ; Environmental Monitoring ; Environmental Pollutants ; Groundwater ; Industrial Waste ; Petroleum ; Soil
    Chemical Substances Environmental Pollutants ; Industrial Waste ; Petroleum ; Soil ; Carbon Dioxide (142M471B3J) ; Carbon (7440-44-0)
    Language English
    Publishing date 2016-10-21
    Publishing country United States
    Document type Journal Article ; Video-Audio Media
    ISSN 1940-087X
    ISSN (online) 1940-087X
    DOI 10.3791/53233
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Book ; Conference proceedings: Intense vortices from the small scale to planetary scale

    Montgomery, Michael T

    [ ... a subset of 26 papers ... presented at the recent 2003 IUGG Conference held in the beautiful and friendly city of Sapporo, Japan, between June 30 and July 1]

    (Dynamics of atmospheres and oceans : Special issue ; 40.2005,3)

    2005  

    Title variant Special issue: intense vortices from the small scale to planetary scale
    Institution International Union of Geodesy and Geophysics
    Event/congress IUGG conference (2003.06.30-07.01, Sapporo)
    Author's details guest ed. Michael T. Montgomery
    Series title Dynamics of atmospheres and oceans : Special issue ; 40.2005,3
    Language English
    Size S. 131 - 236, Ill., graph. Darst., Kt
    Publisher Elsevier
    Publishing place Amsterdam u.a.
    Document type Book ; Conference proceedings
    Database Library catalogue of the German National Library of Science and Technology (TIB), Hannover

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  8. Article: Measuring carbon-based contaminant mineralization using combined co2 flux and radiocarbon analyses

    Boyd, Thomas J / Montgomery, Michael T / Cuenca, Richard H / Hagimoto, Yutaka

    Journal of visualized experiments. 2016 Oct. 21, , no. 116

    2016  

    Abstract: A method is described which uses the absence of radiocarbon in industrial chemicals and fuels made from petroleum feedstocks which frequently contaminate the environment. This radiocarbon signal — or rather the absence of signal — is evenly distributed ... ...

    Abstract A method is described which uses the absence of radiocarbon in industrial chemicals and fuels made from petroleum feedstocks which frequently contaminate the environment. This radiocarbon signal — or rather the absence of signal — is evenly distributed throughout a contaminant source pool (unlike an added tracer) and is not impacted by biological, chemical or physical processes (e.g., the 14C radioactive decay rate is immutable). If the fossil-derived contaminant is fully degraded to CO2, a harmless end-product, that CO2 will contain no radiocarbon. CO2 derived from natural organic matter (NOM) degradation will reflect the NOM radiocarbon content (usually <30,000 years old). Given a known radiocarbon content for NOM (a site background), a two end-member mixing model can be used to determine the CO2 derived from a fossil source in a given soil gas or groundwater sample. Coupling the percent CO2 derived from the contaminant with the CO2 respiration rate provides an estimate for the total amount of contaminant degraded per unit time. Finally, determining a zone of influence (ZOI) representing the volume from which site CO2 is collected allows determining the contaminant degradation per unit time and volume. Along with estimates for total contaminant mass, this can ultimately be used to calculate time-to-remediate or otherwise used by site managers for decision-making.
    Keywords carbon ; carbon dioxide ; carbon dioxide production ; cell respiration ; decision making ; feedstocks ; fossils ; groundwater ; mineralization ; organic matter ; petroleum ; soil air ; statistical models
    Language English
    Dates of publication 2016-1021
    Size p. e53233.
    Publishing place Journal of Visualized Experiments
    Document type Article
    ZDB-ID 2259946-0
    ISSN 1940-087X
    ISSN 1940-087X
    DOI 10.3791/53233
    Database NAL-Catalogue (AGRICOLA)

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  9. Article: Biological treatment and toxicity of low concentrations of oily wastewater (bilgewater).

    Stamper, David M / Montgomery, Michael T

    Canadian journal of microbiology

    2008  Volume 54, Issue 8, Page(s) 687–693

    Abstract: The biodegradability and toxicity of low concentrations of oily wastewater (bilgewater) were tested under simulated sanitary wastewater treatment conditions. This was done to establish the feasibility of a combined shipboard oily and nonoily wastewater ... ...

    Abstract The biodegradability and toxicity of low concentrations of oily wastewater (bilgewater) were tested under simulated sanitary wastewater treatment conditions. This was done to establish the feasibility of a combined shipboard oily and nonoily wastewater treatment system. The biodegradability of oily wastewater was determined by proxy; 14C-labeled dodecane, toluene, and phenanthrene (representing alkane, aromatic, and polyaromatic compounds, respectively) were mineralized in petroleum fuels and lubricants. We found that low concentrations of oily wastewater components were mineralized, even in the presence of more abundant substrates (such as synthetic graywater, containing vegetable oil, detergent, gelatin, and starch). The toxic effects of diesel fuel and several other components of oily wastewater (such as surfactants and a synthetic lubricant) on a naïve wastewater assemblage was also tested. In concentrations much higher than would be expected under normal shipboard conditions, we found no evidence of toxic effects of the bilgewater compounds tested. Thus, a combined shipboard bilgewater and sanitary wastewater system might be feasible.
    MeSH term(s) Bacteria/drug effects ; Bacteria/metabolism ; Biodegradation, Environmental ; Bioreactors/microbiology ; Industrial Waste/adverse effects ; Industrial Waste/analysis ; Petroleum/metabolism ; Petroleum/toxicity ; Sewage/adverse effects ; Sewage/analysis ; Water Pollutants, Chemical/metabolism ; Water Pollutants, Chemical/toxicity
    Chemical Substances Industrial Waste ; Petroleum ; Sewage ; Water Pollutants, Chemical
    Language English
    Publishing date 2008-08
    Publishing country Canada
    Document type Journal Article ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 280534-0
    ISSN 1480-3275 ; 0008-4166
    ISSN (online) 1480-3275
    ISSN 0008-4166
    DOI 10.1139/w08-053
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Dissecting the cellular specificity of smoking effects and reconstructing lineages in the human airway epithelium.

    Goldfarbmuren, Katherine C / Jackson, Nathan D / Sajuthi, Satria P / Dyjack, Nathan / Li, Katie S / Rios, Cydney L / Plender, Elizabeth G / Montgomery, Michael T / Everman, Jamie L / Bratcher, Preston E / Vladar, Eszter K / Seibold, Max A

    Nature communications

    2020  Volume 11, Issue 1, Page(s) 2485

    Abstract: Cigarette smoke first interacts with the lung through the cellularly diverse airway epithelium and goes on to drive development of most chronic lung diseases. Here, through single cell RNA-sequencing analysis of the tracheal epithelium from smokers and ... ...

    Abstract Cigarette smoke first interacts with the lung through the cellularly diverse airway epithelium and goes on to drive development of most chronic lung diseases. Here, through single cell RNA-sequencing analysis of the tracheal epithelium from smokers and non-smokers, we generate a comprehensive atlas of epithelial cell types and states, connect these into lineages, and define cell-specific responses to smoking. Our analysis infers multi-state lineages that develop into surface mucus secretory and ciliated cells and then contrasts these to the unique specification of submucosal gland (SMG) cells. Accompanying knockout studies reveal that tuft-like cells are the likely progenitor of both pulmonary neuroendocrine cells and CFTR-rich ionocytes. Our smoking analysis finds that all cell types, including protected stem and SMG populations, are affected by smoking through both pan-epithelial smoking response networks and hundreds of cell-specific response genes, redefining the penetrance and cellular specificity of smoking effects on the human airway epithelium.
    MeSH term(s) Animals ; Cells, Cultured ; Epithelial Cells/metabolism ; Gene Expression Profiling/methods ; Gene Knockout Techniques ; Gene Regulatory Networks ; Humans ; Lung/cytology ; Lung/metabolism ; Mice ; NIH 3T3 Cells ; Non-Smokers/statistics & numerical data ; Respiratory Mucosa/cytology ; Respiratory Mucosa/metabolism ; Sequence Analysis, RNA/methods ; Single-Cell Analysis/methods ; Smokers/statistics & numerical data ; Smoking/genetics ; Trachea/cytology ; Trachea/metabolism
    Language English
    Publishing date 2020-05-19
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 2553671-0
    ISSN 2041-1723 ; 2041-1723
    ISSN (online) 2041-1723
    ISSN 2041-1723
    DOI 10.1038/s41467-020-16239-z
    Database MEDical Literature Analysis and Retrieval System OnLINE

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