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  1. Article: Regioselective degradation of [beta] 1,3 glucan by ferrous ion and hydrogen peroxide (Fenton oxidation)

    Ovalle, Rafael / Chen, Lijie / Soll, Clifford E / Moore, Carol Wood / Lipke, Peter N

    Carbohydrate research. 2020 Nov., v. 497

    2020  

    Abstract: Many species use Fe⁺² and H₂O₂ to oxidize a wide variety of compounds to simpler molecules. Both pathogen killing by leukocytes (neutrophils and lymphocytes) and degradation of cellulose by brown rot fungi rely on excretion of Fe⁺² ions and H₂O₂, the ... ...

    Abstract Many species use Fe⁺² and H₂O₂ to oxidize a wide variety of compounds to simpler molecules. Both pathogen killing by leukocytes (neutrophils and lymphocytes) and degradation of cellulose by brown rot fungi rely on excretion of Fe⁺² ions and H₂O₂, the Fenton reagent. To elucidate the mechanism of Fenton oxidation of carbohydrates, β1,3 glucan (laminaran), a major fungal wall polysaccharide, was oxidized using a molar ratio of monomer/Fe⁺²/H₂O₂ of 10:1:1 (primarily). We labeled the reaction products and profiled them as fluorescent-labeled molecules in polyacrylamide gels and as hydrophobic-tagged molecules using reverse phase liquid chromatography/mass spectrometry (HPLC/MS).Sub-stoichiometric concentrations of Fe⁺² and H₂O₂ fragmented laminaran into smaller molecules containing carbonyl and carboxylic acid groups visible on fluorescent-labeled carbohydrate polyacrylamide gel electrophoresis. HPLC/MS analysis of glucan fragments showed masses consistent with six classes of molecules: aldoses, dialdoses, uronic acids, hexosuloses, aldonic acids, and hexulosonic acids.The results were consistent with published mechanisms where hydrogen radical (H•) abstraction from a C–H or O–H bond begins a cascade of reactions leading to 1) C–C bond cleavage to produce aldose/dialdose pairs; 2) oxo-group (O =) addition to produce uronic and aldonic acids; 3) hydroxyl group (HO-) addition to produce gluconolactone and hexosuloses; and 4) hexulosonic acids. Most products resulted from regioselective H• abstractions characteristic of oxidations by ferryl-oxo ion [(FeO)⁺²] or perferryl-oxo ion [(FeO)⁺³] in close contact with specific positions in the glycan. Therefore, oxidations initiated by regioselectively-bound Fe ions were the predominant initiators of polysaccharide degradations.
    Keywords aldoses ; carboxylic acids ; cellulose ; cleavage (chemistry) ; excretion ; fluorescent labeling ; gluconolactone ; hydrogen ; hydrogen peroxide ; mass spectrometry ; neutrophils ; oxidation ; pathogens ; polyacrylamide ; polyacrylamide gel electrophoresis ; regioselectivity ; research ; reversed-phase liquid chromatography
    Language English
    Dates of publication 2020-11
    Publishing place Elsevier Ltd
    Document type Article
    Note NAL-AP-2-clean
    ZDB-ID 1435-7
    ISSN 1873-426X ; 0008-6215
    ISSN (online) 1873-426X
    ISSN 0008-6215
    DOI 10.1016/j.carres.2020.108124
    Database NAL-Catalogue (AGRICOLA)

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  2. Article ; Online: Regioselective degradation of [beta] 1,3 glucan by ferrous ion and hydrogen peroxide (Fenton oxidation).

    Ovalle, Rafael / Chen, Lijie / Soll, Clifford E / Moore, Carol Wood / Lipke, Peter N

    Carbohydrate research

    2020  Volume 497, Page(s) 108124

    Abstract: Many species use ... ...

    Abstract Many species use Fe
    Language English
    Publishing date 2020-08-28
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 1435-7
    ISSN 1873-426X ; 0008-6215
    ISSN (online) 1873-426X
    ISSN 0008-6215
    DOI 10.1016/j.carres.2020.108124
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: A Protein in the Yeast

    Farooqi, Kanwal / Ghazvini, Marjan / Pride, Leah D / Mazzella, Louis / White, David / Pramanik, Ajay / Bargonetti, Jill / Moore, Carol Wood

    Biomolecules

    2020  Volume 10, Issue 3

    Abstract: Saccharomyces ... ...

    Abstract Saccharomyces cerevisiae
    MeSH term(s) Humans ; Oligonucleotides/chemistry ; Oligonucleotides/genetics ; Oligonucleotides/metabolism ; Response Elements ; Saccharomyces cerevisiae/chemistry ; Saccharomyces cerevisiae/genetics ; Saccharomyces cerevisiae/metabolism ; Saccharomyces cerevisiae Proteins/chemistry ; Saccharomyces cerevisiae Proteins/genetics ; Saccharomyces cerevisiae Proteins/metabolism ; Tumor Suppressor Protein p53
    Chemical Substances Oligonucleotides ; Saccharomyces cerevisiae Proteins ; TP53 protein, human ; Tumor Suppressor Protein p53
    Language English
    Publishing date 2020-03-07
    Publishing country Switzerland
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 2701262-1
    ISSN 2218-273X ; 2218-273X
    ISSN (online) 2218-273X
    ISSN 2218-273X
    DOI 10.3390/biom10030417
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Expression of the expanded YFL007w ORF and assignment of the gene name BLM10.

    Doherty, Kevin / Pramanik, Ajay / Pride, Leah / Lukose, James / Moore, Carol Wood

    Yeast (Chichester, England)

    2004  Volume 21, Issue 12, Page(s) 1021–1023

    Abstract: This report assigns a gene name to an extended ORF in Saccharomyces cerevisiae, and provides the first evidence from Northern analyses that the ORF is expressed and the transcript is the predicted size. ...

    Abstract This report assigns a gene name to an extended ORF in Saccharomyces cerevisiae, and provides the first evidence from Northern analyses that the ORF is expressed and the transcript is the predicted size.
    MeSH term(s) Blotting, Northern ; DNA, Fungal/chemistry ; DNA, Fungal/genetics ; Open Reading Frames/genetics ; Saccharomyces cerevisiae/genetics ; Saccharomyces cerevisiae/metabolism ; Saccharomyces cerevisiae Proteins/genetics ; Saccharomyces cerevisiae Proteins/metabolism ; Sequence Analysis, DNA ; Transcription, Genetic
    Chemical Substances DNA, Fungal ; Saccharomyces cerevisiae Proteins
    Language English
    Publishing date 2004-09
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, P.H.S.
    ZDB-ID 632636-5
    ISSN 1097-0061 ; 0749-503X
    ISSN (online) 1097-0061
    ISSN 0749-503X
    DOI 10.1002/yea.1146
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Loss of a 20S proteasome activator in Saccharomyces cerevisiae downregulates genes important for genomic integrity, increases DNA damage, and selectively sensitizes cells to agents with diverse mechanisms of action.

    Doherty, Kevin M / Pride, Leah D / Lukose, James / Snydsman, Brian E / Charles, Ronald / Pramanik, Ajay / Muller, Eric G / Botstein, David / Moore, Carol Wood

    G3 (Bethesda, Md.)

    2012  Volume 2, Issue 8, Page(s) 943–959

    Abstract: Cytoprotective functions of a 20S proteasome activator were investigated. Saccharomyces cerevisiae Blm10 and human 20S proteasome activator 200 (PA200) are homologs. Comparative genome-wide analyses of untreated diploid cells lacking Blm10 and growing at ...

    Abstract Cytoprotective functions of a 20S proteasome activator were investigated. Saccharomyces cerevisiae Blm10 and human 20S proteasome activator 200 (PA200) are homologs. Comparative genome-wide analyses of untreated diploid cells lacking Blm10 and growing at steady state at defined growth rates revealed downregulation of numerous genes required for accurate chromosome structure, assembly and repair, and upregulation of a specific subset of genes encoding protein-folding chaperones. Blm10 loss or truncation of the Ubp3/Blm3 deubiquitinating enzyme caused massive chromosomal damage and cell death in homozygous diploids after phleomycin treatments, indicating that Blm10 and Ubp3/Blm3 function to stabilize the genome and protect against cell death. Diploids lacking Blm10 also were sensitized to doxorubicin, hydroxyurea, 5-fluorouracil, rapamycin, hydrogen peroxide, methyl methanesulfonate, and calcofluor. Fluorescently tagged Blm10 localized in nuclei, with enhanced fluorescence after DNA replication. After DNA damage that caused a classic G2/M arrest, fluorescence remained diffuse, with evidence of nuclear fragmentation in some cells. Protective functions of Blm10 did not require the carboxyl-terminal region that makes close contact with 20S proteasomes, indicating that protection does not require this contact or the truncated Blm10 can interact with the proteasome apart from this region. Without its carboxyl-terminus, Blm10((-339aa)) localized to nuclei in untreated, nonproliferating (G(0)) cells, but not during G(1) S, G(2), and M. The results indicate Blm10 functions in protective mechanisms that include the machinery that assures proper assembly of chromosomes. These essential guardian functions have implications for ubiquitin-independent targeting in anticancer therapy. Targeting Blm10/PA200 together with one or more of the upregulated chaperones or a conventional treatment could be efficacious.
    MeSH term(s) Antineoplastic Agents/toxicity ; Cell Nucleus/metabolism ; DNA Damage/genetics ; Diploidy ; Down-Regulation ; Endopeptidases/genetics ; Endopeptidases/metabolism ; G2 Phase Cell Cycle Checkpoints/drug effects ; Genomic Instability ; M Phase Cell Cycle Checkpoints/drug effects ; Molecular Chaperones/metabolism ; Mutation ; Oxidants/toxicity ; Proteasome Endopeptidase Complex/chemistry ; Proteasome Endopeptidase Complex/genetics ; Proteasome Endopeptidase Complex/metabolism ; Saccharomyces cerevisiae/genetics ; Saccharomyces cerevisiae/metabolism ; Saccharomyces cerevisiae Proteins/chemistry ; Saccharomyces cerevisiae Proteins/genetics ; Saccharomyces cerevisiae Proteins/metabolism ; Up-Regulation/genetics
    Chemical Substances Antineoplastic Agents ; Blm10 protein, S cerevisiae ; Molecular Chaperones ; Oxidants ; Saccharomyces cerevisiae Proteins ; Endopeptidases (EC 3.4.-) ; Proteasome Endopeptidase Complex (EC 3.4.25.1) ; UBP3 protein, S cerevisiae (EC 3.4.99.-)
    Language English
    Publishing date 2012-08-01
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 2629978-1
    ISSN 2160-1836 ; 2160-1836
    ISSN (online) 2160-1836
    ISSN 2160-1836
    DOI 10.1534/g3.112.003376
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article: Impaired mitochondrial function protects against free radical-mediated cell death.

    Davermann, Darlene / Martinez, Marcia / McKoy, Judith / Patel, Nima / Averbeck, Dietrich / Moore, Carol Wood

    Free radical biology & medicine

    2002  Volume 33, Issue 9, Page(s) 1209–1220

    Abstract: Free radical damage can have fatal consequences. Mitochondria carry out essential cellular functions and produce high levels of reactive oxygen species (ROS). Many agents also generate ROS. Using the yeast Saccharomyces cerevisiae as a eukaryotic model, ... ...

    Abstract Free radical damage can have fatal consequences. Mitochondria carry out essential cellular functions and produce high levels of reactive oxygen species (ROS). Many agents also generate ROS. Using the yeast Saccharomyces cerevisiae as a eukaryotic model, the role of functional mitochondria in surviving free radical damage was investigated. Respiratory-deficient cells lacking mitochondrial DNA (rho(0)) were up to 100-fold more resistant than isogenic rho(+) cells to killing by ROS generated by the bleomycin-phleomycin family of oxidative agents. Up to approximately 90% of the survivors of high oxidative stress lost mitochondrial function and became "petites." The selective advantage of respiratory deficiency was studied in several strains, including DNA repair-deficient rad52/rad52 and blm5/blm5 diploid strains. These mutant strains are hypersensitive to lethal effects of free radicals and accumulate more DNA damage than related wild-type strains. Losses in mitochondrial function were dose-dependent, and mutational alteration of the RAD52 or BLM5 gene did not affect the resistance of surviving cells lacking mitochondrial function. The results indicate that inactivation of mitochondrial function protects cells against lethal effects of oxygen free radicals.
    MeSH term(s) Antibiotics, Antineoplastic/pharmacology ; Antimetabolites, Antineoplastic/pharmacology ; Bleomycin/pharmacology ; Cell Death/drug effects ; DNA Damage/drug effects ; DNA, Fungal/drug effects ; DNA, Mitochondrial/drug effects ; DNA-Binding Proteins/deficiency ; DNA-Binding Proteins/genetics ; DNA-Binding Proteins/metabolism ; Free Radicals/pharmacology ; Mitochondria/drug effects ; Mitochondria/physiology ; Mutagenesis ; Oxidation-Reduction ; Oxidative Stress/drug effects ; Phleomycins/pharmacology ; Rad52 DNA Repair and Recombination Protein ; Reactive Oxygen Species/pharmacology ; Saccharomyces cerevisiae/drug effects ; Saccharomyces cerevisiae/physiology ; Saccharomyces cerevisiae Proteins
    Chemical Substances Antibiotics, Antineoplastic ; Antimetabolites, Antineoplastic ; DNA, Fungal ; DNA, Mitochondrial ; DNA-Binding Proteins ; Free Radicals ; Phleomycins ; RAD52 protein, S cerevisiae ; Rad52 DNA Repair and Recombination Protein ; Reactive Oxygen Species ; Saccharomyces cerevisiae Proteins ; Bleomycin (11056-06-7)
    Language English
    Publishing date 2002-10-15
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S. ; Research Support, U.S. Gov't, P.H.S.
    ZDB-ID 807032-5
    ISSN 1873-4596 ; 0891-5849
    ISSN (online) 1873-4596
    ISSN 0891-5849
    DOI 10.1016/s0891-5849(02)00984-x
    Database MEDical Literature Analysis and Retrieval System OnLINE

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