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  1. AU="Morgan, Mari"
  2. AU="Namazi Shabestari, Alireza"
  3. AU="Binny, Simon" AU="Binny, Simon"
  4. AU="Payabyab, Eden C"
  5. AU="Kwon, Soon-Chan"
  6. AU="Vaidya, Harshit"
  7. AU="Shan, Chongxin"
  8. AU="Arora, Vineet M"
  9. AU="Carey, Alanna"
  10. AU="Habash, Khader I"
  11. AU="Angela Ribeiro"
  12. AU="Radomir Živadinović"
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  1. Artikel ; Online: "This Is Actually a Really Unique Moment in Time": Navigating Long-Acting HIV Treatment and HIV Cure Research with Analytical Treatment Interruptions-A Qualitative Interview Study in the United States.

    Dubé, Karine / Perez-Brumer, Amaya / Patel, Hursch / Zhou, Carina / Dee, Lynda / Graham, Gail / Meanley, Steven / Philbin, Morgan Mari

    AIDS research and human retroviruses

    2024  

    Abstract: Advancements in long-acting (LA) HIV treatment and cure research with analytical treatment interruptions (ATIs) have generated important scientific and implementation questions. There is an urgent need to examine challenges navigating the evolving HIV ... ...

    Abstract Advancements in long-acting (LA) HIV treatment and cure research with analytical treatment interruptions (ATIs) have generated important scientific and implementation questions. There is an urgent need to examine challenges navigating the evolving HIV treatment and cure research landscape. From August to October 2022, we conducted 26 semistructured interviews with biomedical researchers and community members representing a predominantly woman demographic to explore the complexity of navigating the rapidly evolving HIV therapeutic and HIV cure research landscape. We purposively sampled individuals recruited from the AIDS Clinical Trials Group and the Martin Delaney Collaboratories for HIV Cure Research. Audio files were transcribed verbatim and analyzed through a thematic approach, using an inductive and iterative process. Among 26 participants, 10 were biomedical researchers and 16 community members, including 11 were people with HIV. Three main themes emerged: (1) We are at a pivotal moment in the evolving landscape of HIV therapeutics and LA HIV treatment and HIV cure research should not be siloed but considered together; (2) There are challenges with engagement in HIV cure research and in switching between oral daily antiretroviral treatment and LA formulations and, mainly, the prolonged pharmacokinetic tail of these compounds matched with limited patient education about their impacts; and (3) There are unique opportunities as a result of this evolving therapeutic landscape, including the key role of decision support for people with HIV, centering around patient autonomy, and the need to learn from the lived experiences of people with HIV who choose LA treatment and/or participation in HIV cure research. Despite a bias toward the woman gender, our study identifies key considerations for navigating concurrent LA HIV treatment and HIV cure research with ATIs from both community members and biomedical researchers' perspectives. Achieving optimal HIV control remains a formidable challenge, necessitating robust interdisciplinary collaborations and engagement with key stakeholders.
    Sprache Englisch
    Erscheinungsdatum 2024-03-27
    Erscheinungsland United States
    Dokumenttyp Journal Article
    ZDB-ID 639130-8
    ISSN 1931-8405 ; 0889-2229
    ISSN (online) 1931-8405
    ISSN 0889-2229
    DOI 10.1089/AID.2023.0105
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  2. Artikel ; Online: Genomic epidemiology reveals geographical clustering of multidrug-resistant Escherichia coli ST131 associated with bacteraemia in Wales.

    White, Rhys T / Bull, Matthew J / Barker, Clare R / Arnott, Julie M / Wootton, Mandy / Jones, Lim S / Howe, Robin A / Morgan, Mari / Ashcroft, Melinda M / Forde, Brian M / Connor, Thomas R / Beatson, Scott A

    Nature communications

    2024  Band 15, Heft 1, Seite(n) 1371

    Abstract: Antibiotic resistance is a significant global public health concern. Uropathogenic Escherichia coli sequence type (ST)131, a widely prevalent multidrug-resistant clone, is frequently associated with bacteraemia. This study investigates third-generation ... ...

    Abstract Antibiotic resistance is a significant global public health concern. Uropathogenic Escherichia coli sequence type (ST)131, a widely prevalent multidrug-resistant clone, is frequently associated with bacteraemia. This study investigates third-generation cephalosporin resistance in bloodstream infections caused by E. coli ST131. From 2013-2014 blood culture surveillance in Wales, 142 E. coli ST131 genomes were studied alongside global data. All three major ST131 clades were represented across Wales, with clade C/H30 predominant (n = 102/142, 71.8%). Consistent with global findings, Welsh strains of clade C/H30 contain β-lactamase genes from the bla
    Mesh-Begriff(e) Humans ; Escherichia coli ; Escherichia coli Infections/epidemiology ; Wales/epidemiology ; Genotype ; Escherichia coli Proteins/genetics ; Genomics ; beta-Lactamases/genetics ; Bacteremia/epidemiology ; Cluster Analysis ; Anti-Bacterial Agents/pharmacology ; Anti-Bacterial Agents/therapeutic use ; Drug Resistance, Multiple, Bacterial/genetics
    Chemische Substanzen Escherichia coli Proteins ; beta-Lactamases (EC 3.5.2.6) ; Anti-Bacterial Agents
    Sprache Englisch
    Erscheinungsdatum 2024-02-14
    Erscheinungsland England
    Dokumenttyp Journal Article
    ZDB-ID 2553671-0
    ISSN 2041-1723 ; 2041-1723
    ISSN (online) 2041-1723
    ISSN 2041-1723
    DOI 10.1038/s41467-024-45608-1
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  3. Artikel ; Online: Clonal expansion and rapid characterization of

    Mentasti, Massimo / David, Sophia / Turton, Jane / Morgan, Mari / Turner, Luke / Westlake, Joseph / Jenkins, Jonathan / Williams, Catie / Rey, Sara / Watkins, Joanne / Daniel, Victoria / Mitchell, Shanine / Forbes, Gavin / Wootton, Mandy / Jones, Lim

    Microbial genomics

    2023  Band 9, Heft 9

    Abstract: A multidrug-resistant strain ... ...

    Abstract A multidrug-resistant strain of
    Mesh-Begriff(e) Humans ; Klebsiella pneumoniae/genetics ; Phylogeny ; Wales/epidemiology ; Aminoglycosides ; Anti-Bacterial Agents
    Chemische Substanzen Aminoglycosides ; Anti-Bacterial Agents
    Sprache Englisch
    Erscheinungsdatum 2023-09-04
    Erscheinungsland England
    Dokumenttyp Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2835258-0
    ISSN 2057-5858 ; 2057-5858
    ISSN (online) 2057-5858
    ISSN 2057-5858
    DOI 10.1099/mgen.0.001104
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  4. Artikel ; Online: Novel recombinant SARS-CoV-2 lineage detected through genomic surveillance in Wales, UK.

    Pacchiarini, Nicole / Cronin, Michelle / Sawyer, Clare / Williams, Catie / Beazer, Andrew / Cottrell, Simon / Morgan, Mari / Saunders, Vince / Moore, Catherine / Connor, Thomas R / Williams, Christopher

    Microbial genomics

    2023  Band 9, Heft 4

    Abstract: Recombination, the process whereby a segment of genetic material from one genome is inserted into another, producing a new chimeric genome, is an important evolutionary mechanism frequently observed in coronaviruses. The risks posed by recombination ... ...

    Abstract Recombination, the process whereby a segment of genetic material from one genome is inserted into another, producing a new chimeric genome, is an important evolutionary mechanism frequently observed in coronaviruses. The risks posed by recombination include the shuffling of advantageous mutations that may increase transmissibility, severity or vaccine escape. We present a genomic and epidemiological description of a new recombinant lineage of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), XR, first identified in Wales. The Pathogen Genomics Unit (Public Health Wales, UK) sequences positive SARS-CoV-2 PCR tests using the ARTIC SARS-CoV-2 sequencing protocol. Recombinants were detected using an in-house pipeline and the epidemiological data analysed in R. Nosocomial cases were defined as those with samples taken after >7 days in hospital. Between February and March 2022, we identified 78 samples with highly similar genomes, comprising a BA.1-like 5' end, a BA.2-like 3' end and a BA.2-like spike protein. This signature is consistent with recombination and was defined as XR by Pangolin (PANGO v1.8). A total of 50 % of cases had a sample collected whilst in hospital and the first three cases were immunocompromised patients. The patient median age was 58 years (range: 4-95 years) and most of the patients were fully vaccinated against SARS-CoV-2 (74 % third dose/booster). Three patients died within 28 days of their sample collection date, one of whom had COVID-19 listed amongst ICD10 (International Classification of Diseases 10) coded causes of death. Our integrated system enabled real-time monitoring of recombinant SARS-CoV-2 for early detection, in order to rapidly risk assess and respond. This work highlights the importance of setting-based surveillance of recombinant SARS-CoV-2, as well as the need to monitor immunocompromised populations through repeat testing and sequencing.
    Mesh-Begriff(e) Humans ; Middle Aged ; SARS-CoV-2/genetics ; COVID-19/epidemiology ; Wales/epidemiology ; Polymerase Chain Reaction ; Genomics
    Sprache Englisch
    Erscheinungsdatum 2023-04-13
    Erscheinungsland England
    Dokumenttyp Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2835258-0
    ISSN 2057-5858 ; 2057-5858
    ISSN (online) 2057-5858
    ISSN 2057-5858
    DOI 10.1099/mgen.0.000984
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  5. Artikel ; Online: Differential Decline in Illicit Drug Use by Sexual Identity Among United States High School Students, 2005-2017.

    Felt, Dylan / Wang, Xinzi / Ruprecht, Megan M / Turner, Blair / Beach, Lauren B / Philbin, Morgan Mari / Birkett, Michelle / Phillips Ii, Gregory

    LGBT health

    2020  Band 7, Heft 8, Seite(n) 420–430

    Abstract: Purpose: ...

    Abstract Purpose:
    Mesh-Begriff(e) Adolescent ; Female ; Health Status Disparities ; Humans ; Illicit Drugs ; Male ; Minority Groups/psychology ; Minority Groups/statistics & numerical data ; Risk-Taking ; Schools ; Sexual and Gender Minorities/psychology ; Sexual and Gender Minorities/statistics & numerical data ; Students/psychology ; Students/statistics & numerical data ; Substance-Related Disorders/epidemiology ; Surveys and Questionnaires ; United States/epidemiology
    Chemische Substanzen Illicit Drugs
    Sprache Englisch
    Erscheinungsdatum 2020-11-05
    Erscheinungsland United States
    Dokumenttyp Journal Article ; Research Support, N.I.H., Extramural
    ZDB-ID 2727303-9
    ISSN 2325-8306 ; 2325-8292
    ISSN (online) 2325-8306
    ISSN 2325-8292
    DOI 10.1089/lgbt.2020.0163
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  6. Artikel ; Online: Challenges of investigating a large food-borne norovirus outbreak across all branches of a restaurant group in the United Kingdom, October 2016.

    Morgan, Mari / Watts, Vicky / Allen, David / Curtis, Daniele / Kirolos, Amir / Macdonald, Neil / Maslen, Ellie / Morgan, Deb / Saei, Ayoub / Sedgwick, James / Stevenson, Janet / Turbitt, Deborah / Vivancos, Roberto / Waugh, Catriona / Williams, Chris / Decraene, Valerie

    Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin

    2019  Band 24, Heft 18

    Abstract: During October and November 2016, over 1,000 customers and staff reported gastroenteritis after eating at all 23 branches of a restaurant group in the United Kingdom. The outbreak coincided with a new menu launch and norovirus was identified as the ... ...

    Abstract During October and November 2016, over 1,000 customers and staff reported gastroenteritis after eating at all 23 branches of a restaurant group in the United Kingdom. The outbreak coincided with a new menu launch and norovirus was identified as the causative agent. We conducted four retrospective cohort studies; one among all restaurant staff and three in customers at four branches. We investigated the dishes consumed, reviewed recipes, interviewed chefs and inspected restaurants to identify common ingredients and preparation methods for implicated dishes. Investigations were complicated by three public health agencies concurrently conducting multiple analytical studies, the complex menu with many shared constituent ingredients and the high media attention. The likely source was a contaminated batch of a nationally distributed ingredient, but analytical studies were unable to implicate a single ingredient. The most likely vehicle was a new chipotle chilli product imported from outside the European Union, that was used uncooked in the implicated dishes. This outbreak exemplifies the possibility of rapid spread of infectious agents within a restaurant supply chain, following introduction of a contaminated ingredient. It underlines the importance of appropriate risk assessments and control measures being in place, particularly for new ingredients and ready-to-eat foods.
    Mesh-Begriff(e) Adolescent ; Adult ; Aged ; Caliciviridae Infections/epidemiology ; Capsicum/virology ; Child ; Disease Outbreaks ; Female ; Food Handling/methods ; Foodborne Diseases/epidemiology ; Gastroenteritis/epidemiology ; Humans ; Male ; Middle Aged ; Norovirus/isolation & purification ; Restaurants/statistics & numerical data ; Retrospective Studies ; United Kingdom/epidemiology ; Young Adult
    Sprache Englisch
    Erscheinungsdatum 2019-04-04
    Erscheinungsland Sweden
    Dokumenttyp Journal Article
    ZDB-ID 1338803-4
    ISSN 1560-7917 ; 1025-496X
    ISSN (online) 1560-7917
    ISSN 1025-496X
    DOI 10.2807/1560-7917.ES.2019.24.18.1800511
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  7. Artikel ; Online: WGS to determine the extent of Clostridioides difficile transmission in a high incidence setting in North Wales in 2015.

    Eyre, David W / Shaw, Robert / Adams, Helen / Cooper, Tracey / Crook, Derrick W / Griffin, Rhonda-Marie / Mannion, Phil / Morgan, Mari / Morris, Trefor / Perry, Michael / Jones, Sophie / Peto, Tim E A / Sutton, Jonathan / Walker, A Sarah / Williams, Dafydd / Craine, Noel

    The Journal of antimicrobial chemotherapy

    2018  Band 74, Heft 4, Seite(n) 1092–1100

    Abstract: Objectives: Rates of Clostridioides (Clostridium) difficile infection (CDI) are higher in North Wales than elsewhere in the UK. We used WGS to investigate if this is due to increased healthcare-associated transmission from other cases.: Methods: ... ...

    Abstract Objectives: Rates of Clostridioides (Clostridium) difficile infection (CDI) are higher in North Wales than elsewhere in the UK. We used WGS to investigate if this is due to increased healthcare-associated transmission from other cases.
    Methods: Healthcare and community C. difficile isolates from patients across North Wales (February-July 2015) from glutamate dehydrogenase (GDH)-positive faecal samples underwent WGS. Data from patient records, hospital management systems and national antimicrobial use surveillance were used.
    Results: Of the 499 GDH-positive samples, 338 (68%) were sequenced and 299 distinct infections/colonizations were identified, 229/299 (77%) with toxin genes. Only 39/229 (17%) toxigenic isolates were related within ≤2 SNPs to ≥1 infections/colonizations from a previously sampled patient, i.e. demonstrated evidence of possible transmission. Independent predictors of possible transmission included healthcare exposure in the last 12 weeks (P = 0.002, with rates varying by hospital), infection with MLST types ST-1 (ribotype 027) and ST-11 (predominantly ribotype 078) compared with all other toxigenic STs (P < 0.001), and cephalosporin exposure in the potential transmission recipient (P = 0.02). Adjusting for all these factors, there was no additional effect of ward workload (P = 0.54) or failure to meet cleaning targets (P = 0.25). Use of antimicrobials is higher in North Wales compared with England and the rest of Wales.
    Conclusions: Levels of transmission detected by WGS were comparable to previously described rates in endemic settings; other explanations, such as variations in antimicrobial use, are required to explain the high levels of CDI. Cephalosporins are a risk factor for infection with C. difficile from another infected or colonized case.
    Mesh-Begriff(e) Clostridium Infections/epidemiology ; Clostridium Infections/history ; Clostridium Infections/microbiology ; Clostridium Infections/transmission ; Clostridium difficile/drug effects ; Clostridium difficile/genetics ; Feces/chemistry ; Feces/microbiology ; Female ; Geography, Medical ; History, 21st Century ; Humans ; Incidence ; Male ; Molecular Epidemiology ; Public Health Surveillance ; Risk Factors ; Wales/epidemiology ; Whole Genome Sequencing
    Sprache Englisch
    Erscheinungsdatum 2018-12-12
    Erscheinungsland England
    Dokumenttyp Historical Article ; Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 191709-2
    ISSN 1460-2091 ; 0305-7453
    ISSN (online) 1460-2091
    ISSN 0305-7453
    DOI 10.1093/jac/dky523
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  8. Artikel ; Online: Mortality from methicillin resistant Staphylococcus aureus. Welsh surveillance data show plateau.

    Howard, Anthony J / Morgan, Mari / Looker, David N

    BMJ (Clinical research ed.)

    2003  Band 326, Heft 7387, Seite(n) 501

    Mesh-Begriff(e) England/epidemiology ; Humans ; Methicillin Resistance ; Staphylococcal Infections/drug therapy ; Staphylococcal Infections/mortality ; Staphylococcus aureus ; Wales/epidemiology
    Sprache Englisch
    Erscheinungsdatum 2003-03-01
    Erscheinungsland England
    Dokumenttyp Comment ; Letter
    ZDB-ID 1362901-3
    ISSN 1756-1833 ; 0959-8154 ; 0959-8146 ; 0959-8138 ; 0959-535X ; 1759-2151
    ISSN (online) 1756-1833
    ISSN 0959-8154 ; 0959-8146 ; 0959-8138 ; 0959-535X ; 1759-2151
    DOI 10.1136/bmj.326.7387.501/a
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  9. Artikel ; Online: Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity

    Volz, Erik / Hill, Verity / McCrone, John T. / Price, Anna / Jorgensen, David / O’Toole, Áine / Southgate, Joel / Johnson, Robert / Jackson, Ben / Nascimento, Fabricia F. / Rey, Sara M. / Nicholls, Samuel M. / Colquhoun, Rachel M. / da Silva Filipe, Ana / Shepherd, James / Pascall, David J. / Shah, Rajiv / Jesudason, Natasha / Li, Kathy /
    Jarrett, Ruth / Pacchiarini, Nicole / Bull, Matthew / Geidelberg, Lily / Siveroni, Igor / Goodfellow, Ian / Loman, Nicholas J. / Pybus, Oliver G. / Robertson, Dave / Thomson, Emma C. / Rambaut, Andrew / Connor, Thomas R. / Koshy, Cherian / Wise, Emma / Cortes, Nick / Lynch, Jessica / Kidd, Stephen / Mori, Matilde / Fairley, Derek J. / Curran, Tanya / McKenna, James P. / Adams, Helen / Fraser, Christophe / Golubchik, Tanya / Bonsall, David / Moore, Catrin / Caddy, Sarah L. / Khokhar, Fahad A. / Wantoch, Michelle / Reynolds, Nicola / Warne, Ben / Maksimovic, Joshua / Spellman, Karla / McCluggage, Kathryn / John, Michaela / Beér, Robert / Afifi, Safiah / Morgan, Siân / Marchbank, Angela / Kitchen, C. / Gulliver, Huw / Merrick, Ian / Guest, Martyn / Munn, Robert / Workman, Trudy / Fuller, William / Bresner, Catherine / Snell, Luke B. / Charalampous, Themoula / Nebbia, Gaia / Batra, Rahul / Edgeworth, Jonathan / Robson, Samuel C. / Beckett, Angela / Loveson, Katie F. / Aanensen, David M. / Underwood, Anthony P. / Yeats, Corin A. / Abudahab, Khalil / Taylor, Ben E.W. / Menegazzo, Mirko / Clark, Gemma / Smith, Wendy / Khakh, Manjinder / Fleming, Vicki M. / Lister, Michelle M. / Howson-Wells, Hannah C. / Berry, Louise / Boswell, Tim / Joseph, Amelia / Willingham, Iona / Bird, Paul / Helmer, Thomas / Fallon, Karlie / Holmes, Christopher / Tang, Julian / Raviprakash, Veena / Campbell, Sharon / Sheriff, Nicola / Loose, Matthew W. / Holmes, Nadine / Moore, Christopher / Carlile, Matthew / Wright, Victoria / Sang, Fei / Debebe, Johnny / Coll, Francesc / Signell, Adrian W. / Betancor, Gilberto / Wilson, Harry D. / Feltwell, Theresa / Houldcroft, Charlotte J. / Eldirdiri, Sahar / Kenyon, Anita / Davis, Thomas / Pybus, Oliver / Du Plessis, L. / Zarebski, Alex / Raghwani, Jayna / Kraemer, Moritz / Francois, Sarah / Attwood, Stephen / Vasylyeva, Tetyana / Török, Estée / Hamilton, William L. / Goodfellow, Ian G. / Hall, Grant / Jahun, Aminu S. / Chaudhry, Yasmin / Hosmillo, Myra / Pinckert, Malte L. / Georgana, Iliana / Yakovleva, Anna / Meredith, Luke W. / Moses, S. / Lowe, Hannah / Ryan, Felicity / Fisher, Chloe L. / Awan, Ali R. / Boyes, John / Breuer, Judith / Harris, Kathryn Ann / Brown, Julianne Rose / Shah, Divya / Atkinson, Laura / Lee, Jack C.D. / Alcolea-Medina, Adela / Moore, Nathan / Cortes, Nicholas / Williams, Rebecca / Chapman, Michael R. / Levett, Lisa J. / Heaney, Judith / Smith, Darren L. / Bashton, Matthew / Young, Gregory R. / Allan, John / Loh, Joshua / Randell, Paul A. / Cox, Ali / Madona, Pinglawathee / Holmes, Alison / Bolt, Frances / Price, James / Mookerjee, Siddharth / Rowan, Aileen / Taylor, Graham P. / Ragonnet-Cronin, Manon / Johnson, Rob / Boyd, Olivia / Volz, Erik M. / Brunker, Kirstyn / Smollett, Katherine L. / Quick, Joshua / McMurray, Claire / Stockton, Joanne / Nicholls, Sam / Rowe, William / Poplawski, Radoslaw / Martinez-Nunez, Rocio T. / Mason, Jenifer / Robinson, Trevor I. / O'Toole, Elaine / Watts, Joanne / Breen, Cassie / Cowell, Angela / Ludden, Catherine / Sluga, Graciela / Machin, Nicholas W. / Ahmad, Shazaad S.Y. / George, Ryan P. / Halstead, Fenella / Sivaprakasam, Venkat / Shepherd, James G. / Asamaphan, Patawee / Niebel, Marc O. / Li, Kathy K. / Shah, Rajiv N. / Jesudason, Natasha G. / Parr, Yasmin A. / Tong, Lily / Broos, Alice / Mair, Daniel / Nichols, Jenna / Carmichael, Stephen N. / Nomikou, Kyriaki / Aranday-Cortes, Elihu / Johnson, NaTasha / Starinskij, Igor / Orton, Richard J. / Hughes, Joseph / Vattipally, Sreenu / Singer, Joshua B. / Hale, Antony D. / Macfarlane-Smith, Louissa R. / Harper, Katherine L. / Taha, Yusri / Payne, Brendan A.I. / Burton-Fanning, Shirelle / Waugh, Sheila / Collins, Jennifer / Eltringham, Gary / Templeton, Kate E. / McHugh, Martin P. / Dewar, Rebecca / Wastenge, Elizabeth / Dervisevic, Samir / Stanley, Rachael / Prakash, Reenesh / Stuart, Claire / Elumogo, Ngozi / Sethi, Dheeraj K. / Meader, Emma J. / Coupland, Lindsay J. / Potter, Will / Graham, Clive / Barton, Edward / Padgett, Debra / Scott, Garren / Swindells, Emma / Greenaway, Jane / Nelson, Andrew / Yew, Wen C. / Resende Silva, Paola C. / Andersson, Monique / Shaw, Robert / Peto, Timothy / Justice, Anita / Eyre, David / Crooke, Derrick / Hoosdally, Sarah / Sloan, Tim J. / Duckworth, Nichola / Walsh, Sarah / Chauhan, Anoop J. / Glaysher, Sharon / Bicknell, Kelly / Wyllie, Sarah / Butcher, Ethan / Elliott, Scott / Lloyd, Allyson / Impey, Robert / Levene, Nick / Monaghan, Lynn / Bradley, Declan T. / Allara, Elias / Pearson, Clare / Muir, Peter / Vipond, Ian B. / Hopes, Richard / Pymont, Hannah M. / Hutchings, Stephanie / Curran, Martin D. / Parmar, Surendra / Lackenby, Angie / Mbisa, Tamyo / Platt, Steven / Miah, Shâhjahân / Bibby, David / Manso, Carmen / Hubb, Jonathan / Chand, Meera / Dabrera, Gavin / Ramsay, Mary / Bradshaw, Daniel / Thornton, Alicia / Myers, Richard / Schaefer, Ulf / Groves, Natalie / Gallagher, Eileen / Lee, David / Williams, David / Ellaby, Nicholas / Harrison, Ian / Hartman, Hassan / Manesis, Nikos / Patel, Vineet / Bishop, Chloe / Chalker, Vicki / Osman, Husam / Bosworth, Andrew / Robinson, Esther / Holden, Matthew T.G. / Shaaban, Sharif / Birchley, Alec / Adams, Alexander / Davies, Alisha / Gaskin, Amy / Plimmer, Amy / Gatica-Wilcox, Bree / McKerr, Caoimhe / Moore, Catherine / Williams, Chris / Heyburn, David / De Lacy, Elen / Hilvers, Ember / Downing, Fatima / Shankar, Giri / Jones, Hannah / Asad, Hibo / Coombes, Jason / Watkins, Joanne / Evans, Johnathan M. / Fina, Laia / Gifford, Laura / Gilbert, Lauren / Graham, Lee / Perry, Malorie / Morgan, Mari / Cronin, Michelle / Craine, Noel / Jones, Rachel / Howe, Robin / Corden, Sally / Rey, Sara / Kumziene-Summerhayes, Sara / Taylor, Sarah / Cottrell, Simon / Jones, Sophie / Edwards, Sue / O’Grady, Justin / Page, Andrew J. / Wain, John / Webber, Mark A. / Mather, Alison E. / Baker, David J. / Rudder, Steven / Yāsir, Muḥammad / Thomson, Nicholas M. / Aydin, Alp / Tedim, Ana P. / Kay, Gemma L. / Trotter, Alexander J. / Gilroy, Rachel A.J. / Alikhan, Nabil-Fareed / de Oliveira Martins, Leonardo / Le-Viet, Thanh / Meadows, Lizzie / Kolyva, Anastasia / Diaz, Maria / Bell, Andrew / Gutierrez, Ana Victoria / Charles, Ian G. / Adriaenssens, Evelien M. / Kingsley, Robert A. / Casey, Anna / Simpson, D. A. / Molnár, Zoltán / Thompson, Thomas / Acheson, Erwan / Masoli, Jane A.H. / Knight, Bridget A. / Hattersley, Andrew / Ellard, Sian / Auckland, Cressida / Mahungu, Tabitha W. / Irish-Tavares, Dianne / Haque, Tanzina / Bourgeois, Yann / Scarlett, Garry P. / Partridge, David G. / Raza, Mohammad / Evans, Cariad / Johnson, Kate / Liggett, Steven / Baker, Paul / Essex, Sarah / Lyons, Ronan A. / Caller, Laura G. / Castellano, Sergi / Williams, Rachel J. / Kristiansen, Mark / Roy, Sunando / Williams, Charlotte A. / Dyal, Patricia L. / Tutill, Helena J. / Panchbhaya, Yasmin N. / Forrest, Leysa M. / Niola, Paola / Findlay, Jacqueline / Brooks, Tony T. / Gavriil, Artemis / Mestek-Boukhibar, Lamia / Weeks, Sam / Pandey, Sarojini / Berry, Lisa / Jones, K. E. / Richter, Alex / Beggs, Andrew / Smith, Colin P. / Bucca, Giselda / Hesketh, Andrew R. / Harrison, Ewan M. / Peacock, Sharon J. / Eser, Sophie / Churcher, Carol M. / Bellis, Katherine L. / Girgis, Sophia T. / Naydenova, Plamena / Blane, Beth / Sridhar, Sushmita / Ruis, Chris / Forrest, Sally / Cormie, Claire / Gill, Harmeet K. / Dias, Joana / Higginson, Ellen E. / Maes, Mailis / Young, Jamie / Kermack, Leanne M. / Hadjirin, Nazreen F. / Aggarwal, Dinesh / Griffith, Luke / Swingler, Tracey / Davidson, Rose K. / Williams, Thomas / Balcazar, Carlos E. / Gallagher, Michael D. / O'Toole, Áine / Rooke, Stefan / Colquhoun, Rachel / Ashworth, Jordan / McCrone, J.T. / Scher, Emily / Yu, Xiaoyu / Williamson, Kathleen A. / Stanton, Thomas D. / Michell, Stephen L. / Bewshea, Claire M. / Temperton, Ben / Michelsen, Michelle L. / Warwick-Dugdale, Joanna / Manley, Robin / Farbos, Audrey / Harrison, James W. / Sambles, Christine M. / Studholme, David J. / Jeffries, Aaron R. / Darby, Alistair C. / Hiscox, Julian A. / Paterson, Steve / Iturriza-Gomara, Miren / Jackson, Kathryn A. / Lucaci, Anita O. / Vamos, Edith E. / Hughes, Margaret / Rainbow, Lucille / Eccles, Richard / Nelson, Charlotte / Whitehead, Mark / Turtle, Lance / Haldenby, Sam T. / Gregory, Richard / Gemmell, Matthew / Kwiatkowski, Dominic / de Silva, Thushan I. / Smith, Nikki / Angyal, Adrienn / Lindsey, Benjamin B. / Groves, Danielle C. / Green, Luke R. / Wang, Dennis / Freeman, Timothy M. / Parker, Matthew D. / Keeley, Alexander J. / Parsons, Paul J. / Tucker, Rachel M. / Brown, Rebecca / Wyles, Matthew / Constantinidou, Chrystala / Unnikrishnan, Meera / Ott, Sascha / Cheng, Jeffrey K.J. / Bridgewater, Hannah E. / Frost, Lucy R. / Taylor-Joyce, Grace / Stark, Richard / Baxter, Laura / Alam, Mohammad T. / Brown, Paul E. / McClure, Patrick C. / Chappell, Joseph G. / Tsoleridis, Theocharis / Ball, Jonathan / Gramatopoulos, Dimitris / Buck, David / Todd, John A. / Green, Angie / Trebes, Amy / MacIntyre-Cockett, George / de Cesare, Mariateresa / Langford, Cordelia / Alderton, Alex / Amato, Roberto / Goncalves, Sonia / Jackson, David K. / Johnston, Ian / Sillitoe, John / Palmer, Steve / Lawniczak, Mara / Berriman, Matt / Danesh, John / Livett, Rich / Shirley, Lesley / Farr, Ben / Quail, Mike / Thurston, Scott / Park, Naomi / Betteridge, Emma / Weldon, Danni / Goodwin, Scott / Nelson, Rachel / Beaver, Charlotte / Letchford, Laura / Jackson, David A. / Foulser, Luke / McMinn, Liz / Prestwood, Liam / Kay, Sally / Kane, Leanne / Dorman, Matthew J. / Martincorena, Inigo / Puethe, Christoph / Keatley, Jon-Paul / Tonkin-Hill, Gerry / Smith, Christen / Jamrozy, Dorota / Beale, Mathew A. / Patel, Minal / Ariani, Cristina / Spencer-Chapman, Michael / Drury, Eleanor / Lo, Stephanie / Rajatileka, Shavanthi / Scott, Carol / James, Keith / Buddenborg, Sarah K. / Berger, Duncan J. / Patel, Gaurang / Garcia-Casado, Maria V. / Dibling, Thomas / McGuigan, Samantha / Rogers, Hazel A. / Hunter, Adam D. / Souster, Emily / Neaverson, Alexandra S.

    Cell. 2021 Jan. 07, v. 184, no. 1 p.64-75.e11

    2021  

    Abstract: Global dispersal and increasing frequency of the SARS-CoV-2 spike protein variant D614G are suggestive of a selective advantage but may also be due to a random founder effect. We investigate the hypothesis for positive selection of spike D614G in the ... ...

    Körperschaft COG-UK Consortium
    Abstract Global dispersal and increasing frequency of the SARS-CoV-2 spike protein variant D614G are suggestive of a selective advantage but may also be due to a random founder effect. We investigate the hypothesis for positive selection of spike D614G in the United Kingdom using more than 25,000 whole genome SARS-CoV-2 sequences. Despite the availability of a large dataset, well represented by both spike 614 variants, not all approaches showed a conclusive signal of positive selection. Population genetic analysis indicates that 614G increases in frequency relative to 614D in a manner consistent with a selective advantage. We do not find any indication that patients infected with the spike 614G variant have higher COVID-19 mortality or clinical severity, but 614G is associated with higher viral load and younger age of patients. Significant differences in growth and size of 614G phylogenetic clusters indicate a need for continued study of this variant.
    Schlagwörter COVID-19 infection ; Severe acute respiratory syndrome coronavirus 2 ; data collection ; founder effect ; genetic analysis ; genome ; mortality ; mutation ; pathogenicity ; phylogeny ; viral load ; United Kingdom ; COVID-19 ; SARS-CoV-2 ; evolution ; epidemiology ; spike
    Sprache Englisch
    Erscheinungsverlauf 2021-0107
    Umfang p. 64-75.e11.
    Erscheinungsort Elsevier Inc.
    Dokumenttyp Artikel ; Online
    Anmerkung NAL-AP-2-clean
    ZDB-ID 187009-9
    ISSN 1097-4172 ; 0092-8674
    ISSN (online) 1097-4172
    ISSN 0092-8674
    DOI 10.1016/j.cell.2020.11.020
    Datenquelle NAL Katalog (AGRICOLA)

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  10. Artikel ; Online: Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020

    E., Alm / E. K., Broberg / T., Connor / E. B., Hodcroft / A. B., Komissarov / S., Maurer-Stroh / A., Melidou / R. A., Neher / A., O'Toole / Niko Beerenwinkel, Pereyaslov D. / Posada-Céspedes, Susana / Philipp Jablonski, Kim / Falé Ferreira, Pedro / Topolsky, Ivan / Avšič-Županc, Tatjana / Korva, Miša / Poljak, Mario / Zakotnik, Samo / Mark Zorec, Tomaž /
    Bragstad, Karoline / Hungnes, Olav / Stene-Johansen, Kathrine / Reusken, Chantal / Meijer, Adam / Vennema, Harry / Ruiz-Roldán, Lidia / Alma Bracho, María / García-González, Neris / Chiner-Oms, Álvaro / Cancino-Muñoz, Irving / Comas, Iñaki / A Goig, Galo / Torres-Puente, Manuela / G López, Mariana / Martínez-Priego, Llúcia / D'Auria, Giuseppe / Ferrús-Abad, Loreto / de Marco, Griselda / Galan-Vendrell, Inmaculada / Carbó-Ramirez, Sandra / Ruíz-Hueso, Paula / Coscollá, Mireia / Polackova, Katerina / Kramna, Lenka / Cinek, Ondrej / Richter, Jan / Krashias, George / Tryfonos, Christina / Bashiardes, Stavros / Koptides, Dana / Christodoulou, Christina / Bartolini, Barbara / Em Gruber, Cesare / Di Caro, Antonino / Castilletti, Concetta / Stefani, Fabrizio / Giordana Rimoldi, Sara / Romeri, Francesca / Salerno, Franco / Polesello, Stefano / Nagy, Alexander / Jirincova, Helena / Vecerova, Jaromira / Novakova, Ludmila / Cordey, Samuel / Murtskhvaladze, Marine / Kotaria, Nato / Schär, Tobias / Beisel, Christian / Vugrek, Oliver / Rokić, Filip / Trgovec-Greif, Lovro / Jurak, Igor / Rukavina, Tomislav / Sučić, Neven / Schønning, Kristian / M Karst, Søren / H Kirkegaard, Rasmus / Y Michaelsen, Thomas / Aa Sørensen, Emil / Knutson, Simon / Brandt, Jakob / Le-Quy, Vang / Sørensen, Trine / Petersen, Celine / Schou Pedersen, Martin / Løkkegaard Larsen, Sanne / Nielsine Skov, Marianne / Rasmussen, Morten / Fonager, Jannik / Fomsgaard, Anders / Amirovich Maksyutov, Rinat / Vasil'Evna Gavrilova, Elena / Victorovich Pyankov, Oleg / Alexandrovich Bodnev, Sergey / Vladimirovna Tregubchak, Tatyana / Nikolayevich Shvalov, Alexander / Victorovich Antonets, Denis / Cristina Resende, Paola / Goya, Stephanie / Perrin, Amandine / Tc Lee, Raphael / Yadahalli, Shilpa / X Han, Alvin / A Russell, Colin / Schmutz, Stefan / Zaheri, Maryam / Kufner, Verena / Huber, Michael / Trkola, Alexandra / Antwerpen, Markus / C Walter, Mathias / van der Werf, Sylvie / Gambaro, Fabiana / Behillil, Sylvie / Enouf, Vincent / Donati, Flora / Ustinova, Monta / Rovite, Vita / Klovins, Janis / Savicka, Oksana / K Wienecke-Baldacchino, Anke / Ragimbeau, Catherine / Fournier, Guillaume / Mossong, Joël / W Aberle, Stephan / Haukland, Mattias / Enkirch, Theresa / Advani, Abdolreza / Lind Karlberg, Maria / Karlsson Lindsjö, Oskar / Broddesson, Sandra / Sláviková, Monika / Ličková, Martina / Klempa, Boris / Staroňová, Edita / Tichá, Elena / Szemes, Tomáš / Rusňáková, Diana / Stadler, Tanja / Quer, Josep / Anton, Andres / Andres, Cristina / Piñana, Maria / Garcia-Cehic, Damir / Pumarola, Tomas / Izopet, Jacques / Gioula, Georgia / Exindari, Maria / Papa, Anna / Chatzidimitriou, Dimitrios / Metallidis, Symeon / Pappa, Stella / Macek Jr, Milan / Geryk, Jan / Brož, Petr / Briksí, Aleš / Hubáček, Petr / Dřevínek, Pavel / Zajac, Miroslav / Kvapil, Petr / Holub, Michal / Kvapilová, Kateřina / Novotný, Adam / Kašný, Martin / Klempt, Petr / Vapalahti, Olli / Smura, Teemu / Sironen, Tarja / Selhorst, Philippe / Anthony, Colin / Ariën, Kevin / Simon-Loriere, Etienne / Rabalski, Lukasz / Bienkowska-Szewczyk, Krystyna / Borges, Vítor / Isidro, Joana / Paulo Gomes, João / Guiomar, Raquel / Pechirra, Pedro / Costa, Inês / Duarte, Sílvia / Vieira, Luís / Pyrc, Krzysztof / S Zuckerman, Neta / Turdikulova, Shahlo / Abdullaev, Alisher / Dalimova, Dilbar / Abdurakhimov, Abror / Tagliabracci, Adriano / Alessandrini, Federica / Melchionda, Filomena / Onofri, Valerio / Turchi, Chiara / Bagnarelli, Patrizia / Menzo, Stefano / Caucci, Sara / Di Sante, Laura / Popa, Alexandra / Genger, Jakob-Wendelin / Agerer, Benedikt / Lercher, Alexander / Endler, Lukas / Smyth, Mark / Penz, Thomas / Schuster, Michael / Senekowitsch, Martin / Laine, Jan / Bock, Christoph / Bergthaler, Andreas / Shevtsov, Alexandr / Kalendar, Ruslan / Ramanculov, Yerlan / Graf, Alexander / Muenchhoff, Maximilian / T Keppler, Oliver / Krebs, Stefan / Blum, Helmut / Marcello, Alessandro / Licastro, Danilo / D'Agaro, Pierlanfranco / Laubscher, Florian / Vidanovic, Dejan / Tesovic, Bojana / Volkening, Jeremy / Clementi, Nicola / Mancini, Nicasio / Rupnik, Maja / Mahnic, Aleksander / Walker, Andreas / Houwaart, Torsten / Wienemann, Tobias / Kohns Vasconcelos, Malte / Strelow, Daniel / Ole Jensen, Björn-Erik / Senff, Tina / Hülse, Lisanna / Adams, Ortwin / Andree, Marcel / Hauka, Sandra / Feldt, Torsten / Keitel, Verena / Kindgen-Milles, Detlef / Timm, Jörg / Pfeffer, Klaus / T Dilthey, Alexander / Moore, Catherine / Ozdarendeli, Aykut / Terkis Islam Pavel, Shaikh / Yetiskin, Hazel / Aydin, Gunsu / Holyavkin, Can / Ali Uygut, Muhammet / Cevik, Ceren / Shchetinin, Alexey / Gushchin, Vladimir / Dinler-Doganay, Gizem / Doganay, Levent / Kizilboga-Akgun, Tugba / Karacan, Ilker / Pancer, Katarzyna / Maes, Piet / Martí-Carreras, Joan / Wawina-Bokalanga, Tony / Vanmechelen, Bert / Thürmer, Andrea / Wedde, Marianne / Dürrwald, Ralf / Von Kleist, Max / Drechsel, Oliver / Wolff, Thorsten / Fuchs, Stephan / Kmiecinski, Rene / Michel, Janine / Nitsche, Andreas / Casas, Inmaculada / Iglesias Caballero, María / Zaballos, Ángel / Jiménez, Pilar / Jiménez, Mercedes / Monzón Fernández, Sara / Varona Fernández, Sarai / Cuesta De La Plaza, Isabel / Fadeev, Artem / Ivanova, Anna / Sergeeva, Mariia / Stefanelli, Paola / Estee Torok, M / Hall, Grant / da Silva Filipe, Ana / Turtle, Lance / Afifi, Safiah / Mccluggage, Kathryn / Beer, Robert / Ledesma, Juan / Maksimovic, Joshua / Spellman, Karla / L Hamilton, William / Marchbank, Angela / Alexander Southgate, Joel / Underwood, Anthony / Taylor, Ben / Yeats, Corin / Abudahab, Khalil / R Gemmell, Matthew / Eccles, Richard / Lucaci, Anita / Abigail Nelson, Charlotte / Rainbow, Lucille / Whitehead, Mark / Gregory, Richard / Haldenby, Sam / Paterson, Steve / A Hughes, Margaret / D Curran, Martin / Baker, David / Tucker, Rachel / R Green, Luke / Feltwell, Theresa / D Halstead, Fenella / Wyles, Matthew / S Jahun, Aminu / Y Ahmad, Shazaad S / Georgana, Iliana / Goodfellow, Ian / Yakovleva, Anna / W Meredith, Luke / Gavriil, Artemis / Raza Awan, Ali / Fisher, Chloe / Edgeworth, Jonathan / Lynch, Jessica / Moore, Nathan / Williams, Rebecca / P Kidd, Stephen / Cortes, Nicholas / Brunker, Kirstyn / T Mccrone, John / Quick, Joshua / Duckworth, Nichola / Walsh, Sarah / Sloan, Tim / Ludden, Catherine / P George, Ryan / Eltringham, Gary / R Brown, Julianne / Aranday-Cortes, Elihu / G Shepherd, James / Hughes, Joseph / K Li, Kathy / C Williams, Thomas / Johnson, Natasha / Jesudason, Natasha / Mair, Daniel / Thomson, Emma / Shah, Rajiv / A Parr, Yasmin / Carmichael, Stephen / L Robertson, David / Nomikou, Kyriaki / Broos, Alice / Niebel, Marc / Smollett, Katherine / Tong, Lily / Miah, Shahjahan / Wittner, Anita / Phillips, Nicole / Payne, Brendan / Dewar, Rebecca / Holmes, Alison / Bolt, Frances / R Price, James / Mookerjee, Siddharth / K Sethi, Dheeraj / Potter, Will / Stanley, Rachael / Prakash, Reenesh / Dervisevic, Samir / Clive Graham, Jonathan / Nelson, Andrew / Smith, Darren / R Young, Gregory / Chyin Yew, Wen / A Todd, John / Trebes, Amy / Andersson, Monique / Bull, Matthew / Watkins, Joanne / Birchley, Alec / Gatica-Wilcox, Bree / Gilbert, Lauren / Kumžiene-Summerhayes, Sara / Rey, Sara / Chauhan, Anoop / Butcher, Ethan / Bicknell, Kelly / Elliott, Scott / Glaysher, Sharon / Lackenby, Angie / Bibby, David / Platt, Steven / Mohamed, Hodan / William Machin, Nicholas / Lutamyo Mbisa, Jean / Evans, Jonathan / Perry, Malorie / Pacchiarini, Nicole / Corden, Sally / Geraint Adams, Alexander / Gaskin, Amy / Coombs, Jason / John Graham, Lee / Cottrell, Simon / Morgan, Mari / Gifford, Laura / Kolyva, Anastasia / John Rudder, Steven / J Trotter, Alexander / E Mather, Alison / Aydin, Alp / J Page, Andrew / L Kay, Gemma / de Oliveira Martins, Leonardo / Yasir, Muhammad / Alikhan, Nabil-Fareed / M Thomson, Nicholas / Gilroy, Rachel / A Kingsley, Robert / O'Grady, Justin / Victoria Gutierrez, Ana / Diaz, Maria / Le Viet, Thanh / P Tedim, Ana / M Adriaenssens, Evelien / Patrick Mcclure, C / Moore, Christopher / Sang, Fei / Clark, Gemma / C Howson-Wells, Hannah / Debebe, Johnny / Ball, Jonathan / Chappell, Joseph / Khakh, Manjinder / Carlile, Matthew / Loose, Matthew / M Lister, Michelle / Holmes, Nadine / Tsoleridis, Theocharis / M Fleming, Vicki / Wright, Victoria / Smith, Wendy / D Gallagher, Michael / Parker, Matthew / G Partridge, David / Evans, Cariad / Baker, Paul / Essex, Sarah / Liggett, Steven / J Keeley, Alexander / Bashton, Matthew / Rooke, Stefan / Jane Meader, Emma / Enrique Balcazar Lopez, Carlos / Angyal, Adrienn / Kristiansen, Mark / J Tutill, Helena / Findlay, Jacqueline / Mestek-Boukhibar, Lamia / Forrest, Leysa / Dyal, Patricia / J Williams, Rachel / Panchbhaya, Yasmin / A Williams, Charlotte / Roy, Sunando / Pandey, Sarojini / Stockton, Jo / J Loman, Nicholas / Poplawski, Radoslaw / Nicholls, Samuel / M Rowe, W P / Khokhar, Fahad / Lars Pinckert, Malte / Hosmillo, Myra / Chaudhry, Yasmin / G Caller, Laura / K Davidson, Rose / Griffith, Luke / Rambaut, Andrew / Jackson, Ben / Colquhoun, Rachel / Hill, Verity / Nichols, Jenna / Asamaphan, Patawee / Darby, Alistair / A Jackson, Kathryn / Iturriza-Gomara, Miren / Edith Vamos, Ecaterina / Green, Angie / Aanensen, David / Bonsall, David / Buck, David / Macintyre-Cockett, George / de Cesare, Mariateresa / Pybus, Oliver / Golubchik, Tanya / Scarlett, Garry / F Loveson, Katie / C Robson, Samuel / Beckett, Angela / Lindsey, Benjamin / C Groves, Danielle / J Parsons, Paul / P Mchugh, Martin / Daniel Barnes, James / F Manso, Carmen / Grammatopoulos, Dimitris / Elisabeth Menger, Katja / Harrison, Ewan / Gunson, Rory / J Peacock, Sharon / Gonzalez, Gabriel / Carr, Michael / Mihaela, Lazar / Popovici, Odette / Brytting, Mia / Bresner, Catherine / Fuller, William / Workman, Trudy / F Mentis, Andreas / Kossyvakis, Athanasios / Karamitros, Timokratis / Pogka, Vasiliki / Kalliaropoulos, Antonios / Horefti, Elina / Kontou, Aspasia / Martinez-Gonzalez, Beatriz / Labropoulou, Voula / Voulgari-Kokota, Androniki / Evangelidou, Maria / Bizta, Panagiota / Belimezi, Maria / Lambrechts, Laurens / Z Doymaz, Mehmet / Kalkan Yazici, Merve / S Cetin, Nesibe / Karaaslan, Elif / Kallio-Kokko, Hannimari / Virtanen, Jenni / Suvanto, Maija / Truong Nguyen, Phuoc / Ellonen, Pekka / Hannula, Sari / Kangas, Harri / B Sreenu, Vattipally / Burián, Katalin / Terhes, Gabriella / Gombos, Katalin / Gyenesei, Attila / Urbán, Péter / Herczeg, Róbert / Jakab, Ferenc / Kemenesi, Gábor / Endre Tóth, Gábor / Somogyi, Balázs / Zana, Brigitta / Zeghbib, Safia / Kuczmog, Anett / Földes, Fanni / Lanszki, Zsófia / Madai, Mónika / Papp, Henrietta / Nagy, Ágnes / István Pereszlényi, Csaba / Csaba Babinszky, Gergely / Dudás, Gábor / Csoma, Eszter / N Abou Tayoun, Ahmad / A Alsheikh-Ali, Alawi / Loney, Tom / Nowotny, Norbert / Abdul-Wahab, Osama / Gonzalez-Candelas, Fernando / H Andersen, Martin / Sarah Taylor, And

    2020  

    Abstract: We show the distribution of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) genetic clades over time and between countries and outline potential genomic surveillance objectives. We applied three genomic nomenclature systems to all sequence ... ...

    Abstract We show the distribution of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) genetic clades over time and between countries and outline potential genomic surveillance objectives. We applied three genomic nomenclature systems to all sequence data from the World Health Organization European Region available until 10 July 2020. We highlight the importance of real-time sequencing and data dissemination in a pandemic situation, compare the nomenclatures and lay a foundation for future European genomic surveillance of SARS-CoV-2.
    Schlagwörter COVID-19 ; Europe ; NGS ; nomenclature ; SARS-CoV-2 ; sequencing ; WGS ; Base Sequence ; Betacoronavirus ; Coronavirus ; Coronavirus Infections ; Genome ; Viral ; Humans ; Phylogeography ; Pneumonia ; RNA Replicase ; RNA ; Severe Acute Respiratory Syndrome ; Spatio-Temporal Analysis ; World Health Organization ; Pandemics ; covid19
    Sprache Englisch
    Erscheinungsland it
    Dokumenttyp Artikel ; Online
    Datenquelle BASE - Bielefeld Academic Search Engine (Lebenswissenschaftliche Auswahl)

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