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  1. Article: Neuromodulation Techniques in Chronic Refractory Coccydynia: A Narrative Review.

    Rahimibarghani, Sarvenaz / Morgan, Richard / Diaz, Jose Juan

    Pain and therapy

    2024  Volume 13, Issue 1, Page(s) 53–67

    Abstract: Refractory coccydynia is a condition characterized by severe coccygeal pain and poses a challenging management dilemma for clinicians. Advancements in neuromodulation (NM) technology have provided benefits to people experiencing chronic pain that is ... ...

    Abstract Refractory coccydynia is a condition characterized by severe coccygeal pain and poses a challenging management dilemma for clinicians. Advancements in neuromodulation (NM) technology have provided benefits to people experiencing chronic pain that is resistant to standard treatments. This review aims to summarize the spectrum of current NM techniques employed in the treatment of refractory coccydynia along with their effectiveness. A review of studies in the scientific literature from 2012 to 2023 was conducted, revealing a limited number of case reports. Although the available evidence at this time suggests significant pain relief with the utilization of NM techniques, the limited scope and nature of the studies reviewed emphasize the need for large-scale, rigorous, high-level research in this domain in order to establish a comprehensive understanding of the role of NM and its effectiveness in the management of intractable coccydynia.
    Language English
    Publishing date 2024-01-04
    Publishing country New Zealand
    Document type Journal Article ; Review
    ZDB-ID 2701614-6
    ISSN 2193-651X ; 2193-8237
    ISSN (online) 2193-651X
    ISSN 2193-8237
    DOI 10.1007/s40122-023-00572-4
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: DNA Sequence Control of Enzyme Filamentation and Activation of the SgrAI Endonuclease.

    Ghadirian, Niloofar / Morgan, Richard D / Horton, Nancy C

    Biochemistry

    2024  Volume 63, Issue 3, Page(s) 326–338

    Abstract: Enzyme polymerization (also known as filamentation) has emerged as a new layer of enzyme regulation. SgrAI is a sequence-dependent DNA endonuclease that forms polymeric filaments with enhanced DNA cleavage activity as well as altered DNA sequence ... ...

    Abstract Enzyme polymerization (also known as filamentation) has emerged as a new layer of enzyme regulation. SgrAI is a sequence-dependent DNA endonuclease that forms polymeric filaments with enhanced DNA cleavage activity as well as altered DNA sequence specificity. To better understand this unusual regulatory mechanism, full global kinetic modeling of the reaction pathway, including the enzyme filamentation steps, has been undertaken. Prior work with the primary DNA recognition sequence cleaved by SgrAI has shown how the kinetic rate constants of each reaction step are tuned to maximize activation and DNA cleavage while minimizing the extent of DNA cleavage to the host genome. In the current work, we expand on our prior study by now including DNA cleavage of a secondary recognition sequence, to understand how the sequence of the bound DNA modulates filamentation and activation of SgrAI. The work shows that an allosteric equilibrium between low and high activity states is modulated by the sequence of bound DNA, with primary sequences more prone to activation and filament formation, while SgrAI bound to secondary recognition sequences favor the low (and nonfilamenting) state by up to 40-fold. In addition, the degree of methylation of secondary sequences in the host organism,
    MeSH term(s) Base Sequence ; Protein Multimerization ; Substrate Specificity ; Allosteric Regulation ; DNA/metabolism ; Deoxyribonucleases, Type II Site-Specific/genetics
    Chemical Substances endodeoxyribonuclease SgrAI (EC 3.1.21.-) ; DNA (9007-49-2) ; Deoxyribonucleases, Type II Site-Specific (EC 3.1.21.4)
    Language English
    Publishing date 2024-01-11
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1108-3
    ISSN 1520-4995 ; 0006-2960
    ISSN (online) 1520-4995
    ISSN 0006-2960
    DOI 10.1021/acs.biochem.3c00313
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Downstream of the HOX genes: Explaining conflicting tumour suppressor and oncogenic functions in cancer.

    Morgan, Richard / Hunter, Keith / Pandha, Hardev S

    International journal of cancer

    2022  Volume 150, Issue 12, Page(s) 1919–1932

    Abstract: The HOX genes are a highly conserved group of transcription factors that have key roles in early development, but which are also highly expressed in most cancers. Many studies have found strong associative relationships between the expression of ... ...

    Abstract The HOX genes are a highly conserved group of transcription factors that have key roles in early development, but which are also highly expressed in most cancers. Many studies have found strong associative relationships between the expression of individual HOX genes in tumours and clinical parameters including survival. For the majority of HOX genes, high tumour expression levels seem to be associated with a worse outcome for patients, and in some cases, this has been shown to result from the activation of pro-oncogenic genes and pathways. However, there are also many studies that indicate a tumour suppressor role for some HOX genes, sometimes with conclusions that contradict earlier work. In this review, we have attempted to clarify the role of HOX genes in cancer by focusing on their downstream targets as identified in studies that provide experimental evidence for their activation or repression. On this basis, the majority of HOX genes would appear to have a pro-oncogenic function, with the notable exception of HOXD10, which acts exclusively as a tumour suppressor. HOX proteins regulate a wide range of target genes involved in metastasis, cell death, proliferation and angiogenesis, and activate key cell signalling pathways. Furthermore, for some functionally related targets, this regulation is achieved by a relatively small subgroup of HOX genes.
    MeSH term(s) Carcinogenesis/genetics ; Genes, Homeobox/genetics ; Homeodomain Proteins/genetics ; Homeodomain Proteins/metabolism ; Humans ; Neoplasms/genetics ; Oncogenes/genetics ; Transcription Factors/genetics ; Transcription Factors/metabolism
    Chemical Substances Homeodomain Proteins ; Transcription Factors
    Language English
    Publishing date 2022-02-15
    Publishing country United States
    Document type Journal Article ; Review
    ZDB-ID 218257-9
    ISSN 1097-0215 ; 0020-7136
    ISSN (online) 1097-0215
    ISSN 0020-7136
    DOI 10.1002/ijc.33949
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: PBX3 in Cancer.

    Morgan, Richard / Pandha, Hardev S

    Cancers

    2020  Volume 12, Issue 2

    Abstract: PBX3 is a homeodomain-containing transcription factor of the pre-B cell leukemia (PBX) family, members of which have extensive roles in early development and some adult processes. A number of features distinguish PBX3 from other PBX proteins, including ... ...

    Abstract PBX3 is a homeodomain-containing transcription factor of the pre-B cell leukemia (PBX) family, members of which have extensive roles in early development and some adult processes. A number of features distinguish PBX3 from other PBX proteins, including the ability to form specific and stable interactions with DNA in the absence of cofactors. PBX3 has frequently been reported as having a role in the development and maintenance of a malignant phenotype, and high levels of PBX3 tumor expression have been linked to shorter overall survival in cancer. In this review we consider the similarities and differences in the function of PBX3 in different cancer types and draw together the core signaling pathways involved to help provide a better insight into its potential as a therapeutic target.
    Language English
    Publishing date 2020-02-13
    Publishing country Switzerland
    Document type Journal Article ; Review
    ZDB-ID 2527080-1
    ISSN 2072-6694
    ISSN 2072-6694
    DOI 10.3390/cancers12020431
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: Complete Genome Sequence and Methylome Analysis of Bacillus globigii ATCC 49760.

    Morgan, Richard D

    Genome announcements

    2016  Volume 4, Issue 3

    Abstract: Bacillus subtilis (Ehrenburg) Cohn ATCC 49760, deposited as Bacillus globigii, is the source strain for the restriction enzymes BglI and BglII. Its complete sequence and full methylome were determined using single-molecule real-time (SMRT) sequencing. ...

    Abstract Bacillus subtilis (Ehrenburg) Cohn ATCC 49760, deposited as Bacillus globigii, is the source strain for the restriction enzymes BglI and BglII. Its complete sequence and full methylome were determined using single-molecule real-time (SMRT) sequencing.
    Language English
    Publishing date 2016-05-26
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2704277-7
    ISSN 2169-8287
    ISSN 2169-8287
    DOI 10.1128/genomeA.00427-16
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article: Exploring how fishermen respond to the challenges facing the fishing industry

    Morgan, Richard

    Regional studies Vol. 50, No. 10 , p. 1755-1768

    a case study of diversification in the English channel fishery

    2016  Volume 50, Issue 10, Page(s) 1755–1768

    Author's details Richard Morgan
    Keywords Fishing communities ; Diversification ; Inshore sector ; English Channel
    Language English
    Publisher Routledge, Taylor & Francis Group
    Publishing place Abingdon, Oxfordshire
    Document type Article
    Note Zusammenfassungen in deutscher, französicher, spanischer und chinesischer Sprache
    ZDB-ID 412842-4 ; 2001685-2
    ISSN 1360-0591 ; 0034-3404
    ISSN (online) 1360-0591
    ISSN 0034-3404
    Database ECONomics Information System

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  7. Article ; Online: Boolean immunotherapy: reversal of fortune.

    Morgan, Richard A

    Molecular therapy : the journal of the American Society of Gene Therapy

    2014  Volume 22, Issue 6, Page(s) 1073–1074

    MeSH term(s) Animals ; Humans ; Interleukin-4 Receptor alpha Subunit/genetics ; Neoplasms, Experimental/immunology ; Neoplasms, Experimental/therapy ; Receptors, Interleukin-7/genetics ; T-Lymphocytes/immunology ; Tumor Microenvironment
    Chemical Substances Interleukin-4 Receptor alpha Subunit ; Receptors, Interleukin-7
    Language English
    Publishing date 2014-06-02
    Publishing country United States
    Document type Journal Article ; Comment
    ZDB-ID 2010592-7
    ISSN 1525-0024 ; 1525-0016
    ISSN (online) 1525-0024
    ISSN 1525-0016
    DOI 10.1038/mt.2014.75
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: The incidence of right-sided colon cancer in patients aged over 40 years with acute appendicitis: A systematic review and meta-analysis.

    Hajibandeh, Shahab / Hajibandeh, Shahin / Morgan, Richard / Maw, Andrew

    International journal of surgery (London, England)

    2020  Volume 79, Page(s) 1–5

    Abstract: Objectives: To determine the incidence of right-sided colon cancer in patients aged over 40 years with acute appendicitis.: Methods: We performed a systematic review in accordance with PRISMA statement standards. A search of electronic information ... ...

    Abstract Objectives: To determine the incidence of right-sided colon cancer in patients aged over 40 years with acute appendicitis.
    Methods: We performed a systematic review in accordance with PRISMA statement standards. A search of electronic information sources was conducted to identify all studies reporting the incidence of right-sided colon cancer in patients aged over 40 years with acute appendicitis. The ROBINS-I tool was used to assess the risk of bias of the included studies. Fixed-effect and random-effects models were applied to calculate pooled outcome data.
    Results: A total of 8 studies, enrolling 4328 patients, were included. The mean age of patients was 59 (95% CI 53-65); 54% were male (2330 out of 4328). The diagnosis of appendicitis and colon cancer were based on histological assessment only. In patients aged over 40 years the pooled incidence of right-sided colon cancer was 1.043% (95% CI 0.762-1.367); the level of between-study heterogeneity was low (I
    Conclusions: The risk of right-sided colon cancer in patients aged over 40 years with acute appendicitis is 10 times higher than the risk in general population. This suggests a need for routine preoperative CT scans and postoperative colonic assessment in all patients aged over 40 years presenting with acute appendicitis.
    MeSH term(s) Acute Disease ; Adult ; Age Factors ; Aged ; Aged, 80 and over ; Appendicitis/complications ; Colonic Neoplasms/epidemiology ; Female ; Humans ; Incidence ; Male ; Middle Aged
    Language English
    Publishing date 2020-05-06
    Publishing country England
    Document type Journal Article ; Meta-Analysis ; Systematic Review
    ZDB-ID 2212038-5
    ISSN 1743-9159 ; 1743-9191
    ISSN (online) 1743-9159
    ISSN 1743-9191
    DOI 10.1016/j.ijsu.2020.04.065
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Risky business: target choice in adoptive cell therapy.

    Morgan, Richard A

    Blood

    2013  Volume 122, Issue 20, Page(s) 3392–3394

    Abstract: In this issue of Blood, Casucci et al present an elegant study that describes a potential new target for adoptive cell transfer (ACT), in this case CD44 splice variant 6 (CD44v6), and detail why it may be a good target for ACT and how to manage expected ... ...

    Abstract In this issue of Blood, Casucci et al present an elegant study that describes a potential new target for adoptive cell transfer (ACT), in this case CD44 splice variant 6 (CD44v6), and detail why it may be a good target for ACT and how to manage expected off-tumor/on-target toxicities.
    MeSH term(s) Animals ; Antigens, Neoplasm/immunology ; Humans ; Hyaluronan Receptors/immunology ; Immunotherapy, Adoptive ; Leukemia, Myeloid, Acute/therapy ; Molecular Targeted Therapy ; Multiple Myeloma/therapy ; T-Lymphocyte Subsets/immunology
    Chemical Substances Antigens, Neoplasm ; CD44v6 antigen ; Hyaluronan Receptors
    Language English
    Publishing date 2013-11-13
    Publishing country United States
    Document type Journal Article ; Comment
    ZDB-ID 80069-7
    ISSN 1528-0020 ; 0006-4971
    ISSN (online) 1528-0020
    ISSN 0006-4971
    DOI 10.1182/blood-2013-09-527622
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Identification of HOX signatures contributing to oral cancer phenotype.

    Padam, Kanaka Sai Ram / Morgan, Richard / Hunter, Keith / Chakrabarty, Sanjiban / Kumar, Naveena A N / Radhakrishnan, Raghu

    Scientific reports

    2022  Volume 12, Issue 1, Page(s) 10123

    Abstract: The role of evolutionarily conserved homeobox-containing HOX genes as transcriptional regulators in the developmental specification of organisms is well known. The contribution of HOX genes involvement in oral cancer phenotype has yet to be fully ... ...

    Abstract The role of evolutionarily conserved homeobox-containing HOX genes as transcriptional regulators in the developmental specification of organisms is well known. The contribution of HOX genes involvement in oral cancer phenotype has yet to be fully ascertained. TCGA-HNSC HTSeq-counts and clinical data were retrieved from the GDC portal for oral cavity neoplasms. GEO datasets (GSE72627, GSE30784, GSE37991) were accessed and analyzed using GEO2R. Differential HOX gene expression was profiled using the DESeq2 R package with a log2 fold change cut-off (- 1 and + 1) and Benjamini-Hochberg p-adjusted value at ≤ 0.01. Gene set over-representation analysis and semantic analysis associated with the disease ontology was performed using the ClusterProfiler R package, and pathway over-representation analysis was performed using IMPaLa. HOX protein interaction network was constructed using the Pathfind R package. HOX phenotype associations were performed using Mammalian Phenotype Ontology, Human Phenotype Ontology, PhenGenI associations, Jensen tissues, and OMIM entries. Drug connectivity mapping was carried out with Dr. Insight R package. HOXA2 was upregulated in oral dysplasia but silenced during tumor progression. Loss of HOXB2 expression was consistent in the potentially malignant oral lesions as well as in the primary tumor. HOXA7, HOXA10, HOXB7, HOXC6, HOXC10, HOXD10, and HOXD11 were consistently upregulated from premalignancy to malignancy and were notably associated with risk factors. Overrepresentation analysis suggested HOXA10 was involved in the transcriptional misregulation contributing to the oral cancer phenotype. HOX genes subnetwork analysis showed crucial interactions with cell cycle regulators, growth responsive elements, and proto-oncogenes. Phenotype associations specific to the oral region involving HOX genes provide intrinsic cues to tumor development. The 5' HOX genes were aberrantly upregulated during oral carcinogenesis reflecting their posterior prevalence.
    MeSH term(s) Animals ; Genes, Homeobox ; Homeodomain Proteins/genetics ; Homeodomain Proteins/metabolism ; Mammals/metabolism ; Mouth Neoplasms/genetics ; Phenotype ; Transcription Factors/genetics ; Transcription Factors/metabolism
    Chemical Substances Homeodomain Proteins ; Transcription Factors
    Language English
    Publishing date 2022-06-16
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-022-14412-6
    Database MEDical Literature Analysis and Retrieval System OnLINE

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