Article ; Online: Protocol for Bulk-ATAC sequencing in head and neck squamous cell carcinoma
STAR Protocols, Vol 4, Iss 2, Pp 102233- (2023)
2023
Abstract: Summary: The transposase-accessible chromatin using sequencing (ATAC-seq) offers a simplified approach to detect chromatin changes in cancer cells after genetic intervention and drug treatment. Here, we present an optimized ATAC-seq protocol to elucidate ...
Abstract | Summary: The transposase-accessible chromatin using sequencing (ATAC-seq) offers a simplified approach to detect chromatin changes in cancer cells after genetic intervention and drug treatment. Here, we present an optimized ATAC-seq protocol to elucidate chromatin accessibility changes at the epigenetic level in head and neck squamous cell carcinoma cells. We describe steps for cell lysate preparation, transposition, and tagmentation, followed by library amplification and purification. We then detail next-generation sequencing and data analysis.For complete details on the use and execution of this protocol, please refer to Buenrostro et al.,1 Chen et al.,2 : Publisher’s note: Undertaking any experimental protocol requires adherence to local institutional guidelines for laboratory safety and ethics. |
---|---|
Keywords | Cancer ; Genomics ; Molecular Biology ; Sequencing ; Science (General) ; Q1-390 |
Language | English |
Publishing date | 2023-06-01T00:00:00Z |
Publisher | Elsevier |
Document type | Article ; Online |
Database | BASE - Bielefeld Academic Search Engine (life sciences selection) |
Full text online
More links
Kategorien
Inter-library loan at ZB MED
Your chosen title can be delivered directly to ZB MED Cologne location if you are registered as a user at ZB MED Cologne.