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  1. Article ; Online: Machine-learning with region-level radiomic and dosimetric features for predicting radiotherapy-induced rectal toxicities in prostate cancer patients.

    Yang, Zhuolin / Noble, David J / Shelley, Leila / Berger, Thomas / Jena, Raj / McLaren, Duncan B / Burnet, Neil G / Nailon, William H

    Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology

    2023  Volume 183, Page(s) 109593

    Abstract: Background and purpose: This study aims to build machine learning models to predict radiation-induced rectal toxicities for three clinical endpoints and explore whether the inclusion of radiomic features calculated on radiotherapy planning computerised ... ...

    Abstract Background and purpose: This study aims to build machine learning models to predict radiation-induced rectal toxicities for three clinical endpoints and explore whether the inclusion of radiomic features calculated on radiotherapy planning computerised tomography (CT) scans combined with dosimetric features can enhance the prediction performance.
    Materials and methods: 183 patients recruited to the VoxTox study (UK-CRN-ID-13716) were included. Toxicity scores were prospectively collected after 2 years with grade ≥ 1 proctitis, haemorrhage (CTCAEv4.03); and gastrointestinal (GI) toxicity (RTOG) recorded as the endpoints of interest. The rectal wall on each slice was divided into 4 regions according to the centroid, and all slices were divided into 4 sections to calculate region-level radiomic and dosimetric features. The patients were split into a training set (75%, N = 137) and a test set (25%, N = 46). Highly correlated features were removed using four feature selection methods. Individual radiomic or dosimetric or combined (radiomic + dosimetric) features were subsequently classified using three machine learning classifiers to explore their association with these radiation-induced rectal toxicities.
    Results: The test set area under the curve (AUC) values were 0.549, 0.741 and 0.669 for proctitis, haemorrhage and GI toxicity prediction using radiomic combined with dosimetric features. The AUC value reached 0.747 for the ensembled radiomic-dosimetric model for haemorrhage.
    Conclusions: Our preliminary results show that region-level pre-treatment planning CT radiomic features have the potential to predict radiation-induced rectal toxicities for prostate cancer. Moreover, when combined with region-level dosimetric features and using ensemble learning, the model prediction performance slightly improved.
    MeSH term(s) Male ; Humans ; Prostatic Neoplasms/diagnostic imaging ; Prostatic Neoplasms/radiotherapy ; Rectum/diagnostic imaging ; Radiometry/methods ; Proctitis/diagnostic imaging ; Proctitis/etiology ; Radiation Injuries/diagnostic imaging ; Radiation Injuries/etiology ; Gastrointestinal Diseases ; Machine Learning
    Language English
    Publishing date 2023-03-03
    Publishing country Ireland
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 605646-5
    ISSN 1879-0887 ; 0167-8140
    ISSN (online) 1879-0887
    ISSN 0167-8140
    DOI 10.1016/j.radonc.2023.109593
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Dual Convolutional Neural Networks for Breast Mass Segmentation and Diagnosis in Mammography.

    Li, Heyi / Chen, Dongdong / Nailon, William H / Davies, Mike E / Laurenson, David I

    IEEE transactions on medical imaging

    2021  Volume 41, Issue 1, Page(s) 3–13

    Abstract: Deep convolutional neural networks (CNNs) have emerged as a new paradigm for Mammogram diagnosis. Contemporary CNN-based computer-aided-diagnosis systems (CADs) for breast cancer directly extract latent features from input mammogram image and ignore the ... ...

    Abstract Deep convolutional neural networks (CNNs) have emerged as a new paradigm for Mammogram diagnosis. Contemporary CNN-based computer-aided-diagnosis systems (CADs) for breast cancer directly extract latent features from input mammogram image and ignore the importance of morphological features. In this paper, we introduce a novel end-to-end deep learning framework for mammogram image processing, which computes mass segmentation and simultaneously predicts diagnosis results. Specifically, our method is constructed in a dual-path architecture that solves the mapping in a dual-problem manner, with an additional consideration of important shape and boundary knowledge. One path, called the Locality Preserving Learner (LPL), is devoted to hierarchically extracting and exploiting intrinsic features of the input. Whereas the other path, called the Conditional Graph Learner (CGL), focuses on generating geometrical features via modeling pixel-wise image to mask correlations. By integrating the two learners, both the cancer semantics and cancer representations are well learned, and the component learning paths in return complement each other, contributing an improvement to the mass segmentation and cancer classification problem at the same time. In addition, by integrating an automatic detection set-up, the DualCoreNet achieves fully automatic breast cancer diagnosis practically. Experimental results show that in benchmark DDSM dataset, DualCoreNet has outperformed other related works in both segmentation and classification tasks, achieving 92.27% DI coefficient and 0.85 AUC score. In another benchmark INbreast dataset, DualCoreNet achieves the best mammography segmentation (93.69% DI coefficient) and competitive classification performance (0.93 AUC score).
    MeSH term(s) Breast/diagnostic imaging ; Breast Neoplasms/diagnostic imaging ; Diagnosis, Computer-Assisted ; Female ; Humans ; Image Processing, Computer-Assisted ; Mammography ; Neural Networks, Computer
    Language English
    Publishing date 2021-12-30
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 622531-7
    ISSN 1558-254X ; 0278-0062
    ISSN (online) 1558-254X
    ISSN 0278-0062
    DOI 10.1109/TMI.2021.3102622
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Response to Letter to the Editor of Radiotherapy and Oncology regarding the paper entitled "50 years of radiotherapy research: Evolution, trends and lessons for the future" by Berger et al. (December 2021, volume 165).

    Berger, Thomas / Noble, David J / Shelley, Leila E A / Hopkins, Kirsten I / McLaren, Duncan B / Burnet, Neil G / Nailon, William H

    Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology

    2022  Volume 172, Page(s) 151–152

    MeSH term(s) Humans ; Medical Oncology ; Radiation Oncology ; Research
    Language English
    Publishing date 2022-04-07
    Publishing country Ireland
    Document type Letter ; Comment
    ZDB-ID 605646-5
    ISSN 1879-0887 ; 0167-8140
    ISSN (online) 1879-0887
    ISSN 0167-8140
    DOI 10.1016/j.radonc.2022.04.001
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Quantitative cone-beam CT reconstruction with polyenergetic scatter model fusion.

    Mason, Jonathan H / Perelli, Alessandro / Nailon, William H / Davies, Mike E

    Physics in medicine and biology

    2018  Volume 63, Issue 22, Page(s) 225001

    Abstract: Scatter can account for large errors in cone-beam CT (CBCT) due to its wide field of view, and its complicated nature makes its compensation difficult. Iterative polyenergetic reconstruction algorithms offer the potential to provide quantitative imaging ... ...

    Abstract Scatter can account for large errors in cone-beam CT (CBCT) due to its wide field of view, and its complicated nature makes its compensation difficult. Iterative polyenergetic reconstruction algorithms offer the potential to provide quantitative imaging in CT, but they are usually incompatible with scatter contaminated measurements. In this work, we introduce a polyenergetic convolutional scatter model that is directly fused into the reconstruction process, and exploits information readily available at each iteration for a fraction of additional computational cost. We evaluate this method with numerical and real CBCT measurements, and show significantly enhanced electron density estimation and artifact mitigation over pre-calculated fast adaptive scatter kernel superposition (fASKS). We demonstrate our approach has two levels of benefit: reducing the bias introduced by estimating scatter prior to reconstruction; and adapting to the spectral and spatial properties of the specimen.
    MeSH term(s) Algorithms ; Artifacts ; Cone-Beam Computed Tomography/methods ; Cone-Beam Computed Tomography/standards ; Humans ; Phantoms, Imaging ; Scattering, Radiation
    Language English
    Publishing date 2018-11-07
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 208857-5
    ISSN 1361-6560 ; 0031-9155
    ISSN (online) 1361-6560
    ISSN 0031-9155
    DOI 10.1088/1361-6560/aae794
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: 50 years of radiotherapy research: Evolution, trends and lessons for the future.

    Berger, Thomas / Noble, David J / Shelley, Leila E A / Hopkins, Kirsten I / McLaren, Duncan B / Burnet, Neil G / Nailon, William H

    Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology

    2021  Volume 165, Page(s) 75–86

    Abstract: Rapid and relentless technological advances in an ever-more globalized world have shaped the field of radiation oncology in which we practise today. These developments have drastically modified the ... ...

    Abstract Rapid and relentless technological advances in an ever-more globalized world have shaped the field of radiation oncology in which we practise today. These developments have drastically modified the habitus
    MeSH term(s) Databases, Factual ; Humans ; Neoplasms/radiotherapy ; Radiation Oncology ; Research
    Language English
    Publishing date 2021-10-04
    Publishing country Ireland
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Review
    ZDB-ID 605646-5
    ISSN 1879-0887 ; 0167-8140
    ISSN (online) 1879-0887
    ISSN 0167-8140
    DOI 10.1016/j.radonc.2021.09.026
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Sub-regional analysis of the parotid glands: model development for predicting late xerostomia with radiomics features in head and neck cancer patients.

    Berger, Thomas / Noble, David J / Yang, Zhuolin / Shelley, Leila Ea / McMullan, Thomas / Bates, Amy / Thomas, Simon / Carruthers, Linda J / Beckett, George / Duffton, Aileen / Paterson, Claire / Jena, Raj / McLaren, Duncan B / Burnet, Neil G / Nailon, William H

    Acta oncologica (Stockholm, Sweden)

    2023  Volume 62, Issue 2, Page(s) 166–173

    Abstract: Background: The irradiation of sub-regions of the parotid has been linked to xerostomia development in patients with head and neck cancer (HNC). In this study, we compared the xerostomia classification performance of radiomics features calculated on ... ...

    Abstract Background: The irradiation of sub-regions of the parotid has been linked to xerostomia development in patients with head and neck cancer (HNC). In this study, we compared the xerostomia classification performance of radiomics features calculated on clinically relevant and de novo sub-regions of the parotid glands of HNC patients.
    Material and methods: All patients (
    Results: In this study, radiomics-based models predicted xerostomia better than standard clinical predictors. Models combining dose to the parotid and xerostomia scores at baseline yielded an AUC
    Conclusion: Our results indicate that variations of radiomics features calculated on sub-regions of the parotid glands can lead to earlier and improved prediction of xerostomia in HNC patients.
    MeSH term(s) Head and Neck Neoplasms/radiotherapy ; Xerostomia/complications ; Humans ; Radiomics ; Parotid Gland/diagnostic imaging ; Parotid Gland/radiation effects ; Radiotherapy Dosage ; Image Processing, Computer-Assisted ; Male ; Female ; Middle Aged ; Aged
    Language English
    Publishing date 2023-02-21
    Publishing country England
    Document type Journal Article
    ZDB-ID 896449-x
    ISSN 1651-226X ; 0349-652X ; 0284-186X ; 1100-1704
    ISSN (online) 1651-226X
    ISSN 0349-652X ; 0284-186X ; 1100-1704
    DOI 10.1080/0284186X.2023.2179895
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Polyquant CT: direct electron and mass density reconstruction from a single polyenergetic source.

    Mason, Jonathan H / Perelli, Alessandro / Nailon, William H / Davies, Mike E

    Physics in medicine and biology

    2017  Volume 62, Issue 22, Page(s) 8739–8762

    Abstract: Quantifying material mass and electron density from computed tomography (CT) reconstructions can be highly valuable in certain medical practices, such as radiation therapy planning. However, uniquely parameterising the x-ray attenuation in terms of mass ... ...

    Abstract Quantifying material mass and electron density from computed tomography (CT) reconstructions can be highly valuable in certain medical practices, such as radiation therapy planning. However, uniquely parameterising the x-ray attenuation in terms of mass or electron density is an ill-posed problem when a single polyenergetic source is used with a spectrally indiscriminate detector. Existing approaches to single source polyenergetic modelling often impose consistency with a physical model, such as water-bone or photoelectric-Compton decompositions, which will either require detailed prior segmentation or restrictive energy dependencies, and may require further calibration to the quantity of interest. In this work, we introduce a data centric approach to fitting the attenuation with piecewise-linear functions directly to mass or electron density, and present a segmentation-free statistical reconstruction algorithm for exploiting it, with the same order of complexity as other iterative methods. We show how this allows both higher accuracy in attenuation modelling, and demonstrate its superior quantitative imaging, with numerical chest and metal implant data, and validate it with real cone-beam CT measurements.
    Language English
    Publishing date 2017-11-02
    Publishing country England
    Document type Journal Article
    ZDB-ID 208857-5
    ISSN 1361-6560 ; 0031-9155
    ISSN (online) 1361-6560
    ISSN 0031-9155
    DOI 10.1088/1361-6560/aa9162
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Gender-related and geographic trends in interactions between radiotherapy professionals on Twitter.

    Berger, Thomas / Payan, Neree / Fleury, Emmanuelle / Davey, Angela / Bryce-Atkinson, Abigail / Vasquez Osorio, Eliana / Yang, Zhuolin / McMullan, Thomas / Shelley, Leila E A / Gasnier, Anne / Bertholet, Jenny / Aznar, Marianne C / Nailon, William H

    Physics and imaging in radiation oncology

    2022  Volume 24, Page(s) 129–135

    Abstract: Background and purpose: Twitter presence in academia has been linked to greater research impact which influences career progression. The purpose of this study was to analyse Twitter activity of the radiotherapy community around ESTRO congresses with a ... ...

    Abstract Background and purpose: Twitter presence in academia has been linked to greater research impact which influences career progression. The purpose of this study was to analyse Twitter activity of the radiotherapy community around ESTRO congresses with a focus on gender-related and geographic trends.
    Materials and methods: Tweets, re-tweets and replies, here designated as
    Results: Twitter activity around ESTRO congresses was multiplied by 60 in 6 years growing from 150 interactions in 2012 to a peak of 9097 in 2018. In 2020, during the SARS-CoV-2 pandemic, activity dropped by 60 % to reach 2945 interactions and recovered to half the pre-pandemic level in 2021. Europe, North America and Oceania were strongly connected and remained the main contributors. While overall, 58 % of accounts were owned by men, this proportion increased towards top liked/re-tweeted tweets and most-followed profiles to reach up to 84 % in the top-percentiles.
    Conclusion: During the SARS-CoV-2 pandemic, Twitter activity around ESTRO congresses substantially decreased. Men were over-represented on the platform and in most popular tweets and influential accounts. Given the increasing importance of social media presence in academia the gender-based biases observed may help in understanding the gender gap in career progression.
    Language English
    Publishing date 2022-11-09
    Publishing country Netherlands
    Document type Journal Article
    ISSN 2405-6316
    ISSN (online) 2405-6316
    DOI 10.1016/j.phro.2022.11.002
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Fast and automated biomarker detection in breath samples with machine learning.

    Skarysz, Angelika / Salman, Dahlia / Eddleston, Michael / Sykora, Martin / Hunsicker, Eugénie / Nailon, William H / Darnley, Kareen / McLaren, Duncan B / Thomas, C L Paul / Soltoggio, Andrea

    PloS one

    2022  Volume 17, Issue 4, Page(s) e0265399

    Abstract: Volatile organic compounds (VOCs) in human breath can reveal a large spectrum of health conditions and can be used for fast, accurate and non-invasive diagnostics. Gas chromatography-mass spectrometry (GC-MS) is used to measure VOCs, but its application ... ...

    Abstract Volatile organic compounds (VOCs) in human breath can reveal a large spectrum of health conditions and can be used for fast, accurate and non-invasive diagnostics. Gas chromatography-mass spectrometry (GC-MS) is used to measure VOCs, but its application is limited by expert-driven data analysis that is time-consuming, subjective and may introduce errors. We propose a machine learning-based system to perform GC-MS data analysis that exploits deep learning pattern recognition ability to learn and automatically detect VOCs directly from raw data, thus bypassing expert-led processing. We evaluate this new approach on clinical samples and with four types of convolutional neural networks (CNNs): VGG16, VGG-like, densely connected and residual CNNs. The proposed machine learning methods showed to outperform the expert-led analysis by detecting a significantly higher number of VOCs in just a fraction of time while maintaining high specificity. These results suggest that the proposed novel approach can help the large-scale deployment of breath-based diagnosis by reducing time and cost, and increasing accuracy and consistency.
    MeSH term(s) Biomarkers/analysis ; Breath Tests/methods ; Gas Chromatography-Mass Spectrometry/methods ; Humans ; Machine Learning ; Volatile Organic Compounds/analysis
    Chemical Substances Biomarkers ; Volatile Organic Compounds
    Language English
    Publishing date 2022-04-12
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2267670-3
    ISSN 1932-6203 ; 1932-6203
    ISSN (online) 1932-6203
    ISSN 1932-6203
    DOI 10.1371/journal.pone.0265399
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Book ; Online: Dual Convolutional Neural Networks for Breast Mass Segmentation and Diagnosis in Mammography

    Li, Heyi / Chen, Dongdong / Nailon, William H. / Davies, Mike E. / Laurenson, David

    2020  

    Abstract: Deep convolutional neural networks (CNNs) have emerged as a new paradigm for Mammogram diagnosis. Contemporary CNN-based computer-aided-diagnosis (CAD) for breast cancer directly extract latent features from input mammogram image and ignore the ... ...

    Abstract Deep convolutional neural networks (CNNs) have emerged as a new paradigm for Mammogram diagnosis. Contemporary CNN-based computer-aided-diagnosis (CAD) for breast cancer directly extract latent features from input mammogram image and ignore the importance of morphological features. In this paper, we introduce a novel deep learning framework for mammogram image processing, which computes mass segmentation and simultaneously predict diagnosis results. Specifically, our method is constructed in a dual-path architecture that solves the mapping in a dual-problem manner, with an additional consideration of important shape and boundary knowledge. One path called the Locality Preserving Learner (LPL), is devoted to hierarchically extracting and exploiting intrinsic features of the input. Whereas the other path, called the Conditional Graph Learner (CGL) focuses on generating geometrical features via modeling pixel-wise image to mask correlations. By integrating the two learners, both the semantics and structure are well preserved and the component learning paths in return complement each other, contributing an improvement to the mass segmentation and cancer classification problem at the same time. We evaluated our method on two most used public mammography datasets, DDSM and INbreast. Experimental results show that DualCoreNet achieves the best mammography segmentation and classification simultaneously, outperforming recent state-of-the-art models.
    Keywords Electrical Engineering and Systems Science - Image and Video Processing ; Computer Science - Machine Learning
    Subject code 006
    Publishing date 2020-08-06
    Publishing country us
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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