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  1. Article: Anti-MDA5 Antibody-Positive Clinically Amyopathic Dermatomyositis Associated With Multiple Heterologous Carcinomas: A Case Report.

    Nakano, Yoshio / Nishida, Koji / Okamoto, Norio / Gohma, Iwao / Yasuhara, Yumiko

    Cureus

    2024  Volume 16, Issue 2, Page(s) e54660

    Abstract: Dermatomyositis (DM), an autoimmune disorder, is linked to increased malignancy risk. A 53-year-old man with anti-melanoma differentiation-associated gene 5 (MDA5)-positive clinically amyopathic dermatomyositis (CADM) and rapidly progressing interstitial ...

    Abstract Dermatomyositis (DM), an autoimmune disorder, is linked to increased malignancy risk. A 53-year-old man with anti-melanoma differentiation-associated gene 5 (MDA5)-positive clinically amyopathic dermatomyositis (CADM) and rapidly progressing interstitial lung disease (RP-ILD) developed heterochronous gastric and colorectal cancers. Early endoscopic screenings led to successful curative resections, preventing recurrence. Despite low cancer incidence assumptions in patients with anti-MDA5-positive RP-ILD, this case advocates for reevaluation and periodic cancer screenings to enhance management, considering the improved survival with intensive therapy. Vigilance for multiple carcinomas at various time points is vital in CADM management.
    Language English
    Publishing date 2024-02-21
    Publishing country United States
    Document type Case Reports
    ZDB-ID 2747273-5
    ISSN 2168-8184
    ISSN 2168-8184
    DOI 10.7759/cureus.54660
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Phylogenetic trees of closely related bacterial species and subspecies based on frequencies of short nucleotide sequences.

    Nakano, Yoshio / Domon, Yusaku / Yamagishi, Kenji

    PloS one

    2023  Volume 18, Issue 4, Page(s) e0268847

    Abstract: Bacterial phylogenetic analyses are commonly performed to explore the evolutionary relationships among various bacterial species and genera based on their 16S rRNA gene sequences; however, these results are limited by mosaicism, intragenomic ... ...

    Abstract Bacterial phylogenetic analyses are commonly performed to explore the evolutionary relationships among various bacterial species and genera based on their 16S rRNA gene sequences; however, these results are limited by mosaicism, intragenomic heterogeneity, and difficulties in distinguishing between related species. In this study, we aimed to perform genome-wide comparisons of different bacterial species, namely Escherichia coli, Shigella, Yersinia, Klebsiella, and Neisseria spp., based on their K-mer profiles to construct phylogenetic trees. Pentanucleotide frequency analyses (512 patterns of 5 nucleotides each) were performed to distinguish between highly similar species. Moreover, Escherichia albertii strains were clearly distinguished from E. coli and Shigella, despite being closely related to enterohemorrhagic E. coli in the phylogenetic tree. In addition, our phylogenetic tree of Ipomoea species based on pentamer frequency in chloroplast genomes was correlated with previously reported morphological similarities. Furthermore, a support vector machine clearly classified E. coli and Shigella genomes based on their pentanucleotide profiles. These results suggest that phylogenetic analyses based on penta- or hexamer profiles are a useful methodology for microbial phylogenetic studies. In addition, we introduced an R application, Phy5, which generates a phylogenetic tree based on genome-wide comparisons of pentamer profiles. The online version of Phy5 can be accessed at https://phy5.shinyapps.io/Phy5R/ and its command line version Phy5cli can be downloaded at https://github.com/YoshioNakano2021/phy5.
    MeSH term(s) Phylogeny ; Base Sequence ; Escherichia coli/genetics ; RNA, Ribosomal, 16S/genetics ; Biological Evolution ; Bacteria/genetics ; Shigella/genetics
    Chemical Substances RNA, Ribosomal, 16S
    Language English
    Publishing date 2023-04-20
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2267670-3
    ISSN 1932-6203 ; 1932-6203
    ISSN (online) 1932-6203
    ISSN 1932-6203
    DOI 10.1371/journal.pone.0268847
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Acute worsening of glycemic control in a patient with type 2 diabetes and non-small cell lung cancer after administration of lorlatinib.

    Nakano, Yoshio / Miyasato-Isoda, Mai / Gohma, Iwao / Fujisawa, Tomomi

    Clinical case reports

    2022  Volume 10, Issue 1, Page(s) e05283

    Abstract: A patient with non-small cell lung cancer (NSCLC) exhibited extreme hyperglycemia after lorlatinib treatment. The present case highlights the importance of glucose monitoring during lorlatinib administration and intensifying hyperglycemia treatment. ...

    Abstract A patient with non-small cell lung cancer (NSCLC) exhibited extreme hyperglycemia after lorlatinib treatment. The present case highlights the importance of glucose monitoring during lorlatinib administration and intensifying hyperglycemia treatment.
    Language English
    Publishing date 2022-01-20
    Publishing country England
    Document type Case Reports
    ZDB-ID 2740234-4
    ISSN 2050-0904
    ISSN 2050-0904
    DOI 10.1002/ccr3.5283
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: The effects of cigarette smoking on the salivary and tongue microbiome.

    Suzuki, Nao / Nakano, Yoshio / Yoneda, Masahiro / Hirofuji, Takao / Hanioka, Takashi

    Clinical and experimental dental research

    2021  Volume 8, Issue 1, Page(s) 449–456

    Abstract: Objectives: It has been suggested that smoking affects the oral microbiome, but its effects on sites other than the subgingival microbiome remain unclear. This study investigated the composition of the salivary and tongue bacterial communities of ... ...

    Abstract Objectives: It has been suggested that smoking affects the oral microbiome, but its effects on sites other than the subgingival microbiome remain unclear. This study investigated the composition of the salivary and tongue bacterial communities of smokers and nonsmokers in periodontally healthy adults.
    Methods: The study population included 50 healthy adults. The bacterial composition of resting saliva and the tongue coating was identified through barcoded pyrosequencing analysis of the 16S rRNA gene. The Brinkman index (BI) was used to calculate lifetime exposure to smoking. The richness and diversity of the microbiome were evaluated using the t-test. Differences in the proportions of bacterial genera between smokers and nonsmokers were evaluated using the Mann-Whitney U test. The quantitative relationship between the proportions of genera and the BI was evaluated using Pearson's correlation analysis.
    Results: The richness and diversity of the oral microbiome differed significantly between saliva and the tongue but not between smokers and nonsmokers. The saliva samples from smokers were enriched with the genera Treponema and Selenomonas. The tongue samples from smokers were enriched with the genera Dialister and Atopobium. The genus Cardiobacterium in saliva, and the genus Granulicatella on the tongue, were negatively correlated with BI values. On the other hand, the genera Treponema, Oribacterium, Dialister, Filifactor, Veillonella, and Selenomonas in saliva and Dialister, Bifidobacterium, Megasphaera, Mitsuokella, and Cryptobacterium on the tongue were positively correlated with BI values.
    Conclusions: The saliva and tongue microbial profiles of smokers and nonsmokers differed in periodontally healthy adults. The genera associated with periodontitis and oral malodor accounted for high proportions in saliva and on the tongue of smokers without periodontitis and were positively correlated with lifetime exposure to smoking. The tongue might be a reservoir of pathogens associated with oral disease in smokers.
    MeSH term(s) Adult ; Bacteria/genetics ; Cigarette Smoking ; Humans ; Microbiota/genetics ; Periodontitis/microbiology ; RNA, Ribosomal, 16S/genetics ; Tongue/microbiology
    Chemical Substances RNA, Ribosomal, 16S
    Language English
    Publishing date 2021-09-10
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2829558-4
    ISSN 2057-4347 ; 2057-4347
    ISSN (online) 2057-4347
    ISSN 2057-4347
    DOI 10.1002/cre2.489
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: A case of thoracic

    Nakano, Yoshio / Sekinada, Daisuke / Kuze, Yusuke / Okamoto, Norio / Gohma, Iwao / Yasuhara, Yumiko

    Clinical case reports

    2022  Volume 10, Issue 12, Page(s) e6745

    Abstract: ... ...

    Abstract Thoracic
    Language English
    Publishing date 2022-12-13
    Publishing country England
    Document type Case Reports
    ZDB-ID 2740234-4
    ISSN 2050-0904
    ISSN 2050-0904
    DOI 10.1002/ccr3.6745
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article: Clarithromycin-induced eosinophilic granulomatosis with polyangiitis: A case report.

    Nakano, Yoshio / Sekinada, Daisuke / Masuda, Gen / Nishio, Chihiro / Nishida, Koji / Okamoto, Norio / Gohma, Iwao / Esa, Yoshiki

    Respiratory medicine case reports

    2023  Volume 44, Page(s) 101878

    Abstract: A 75-year-old man presented to our hospital with chronic sinusitis, bronchiectasis, and chronic lower respiratory tract infections. He began taking erythromycin in August, X-2. The chronic lower respiratory tract infection gradually worsened, and ... ...

    Abstract A 75-year-old man presented to our hospital with chronic sinusitis, bronchiectasis, and chronic lower respiratory tract infections. He began taking erythromycin in August, X-2. The chronic lower respiratory tract infection gradually worsened, and clarithromycin was started on May 11, X. He became aware of fever and numbness in his lower legs on June 4, X. The sign occurred soon after oral clarithromycin and blood tests showed an elevated eosinophil count and C-reactive protein (CRP) levels, positive MPO-ANCA antibodies, and positive for drug-induced lymphocyte stimulation test (DLST); we diagnosed eosinophilic granulomatosis with polyangiitis (EGPA) associated with clarithromycin administration.
    Language English
    Publishing date 2023-05-31
    Publishing country England
    Document type Case Reports
    ZDB-ID 2666110-X
    ISSN 2213-0071
    ISSN 2213-0071
    DOI 10.1016/j.rmcr.2023.101878
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Predicting oral malodour based on the microbiota in saliva samples using a deep learning approach.

    Nakano, Yoshio / Suzuki, Nao / Kuwata, Fumiyuki

    BMC oral health

    2018  Volume 18, Issue 1, Page(s) 128

    Abstract: Background: Oral malodour is mainly caused by volatile sulphur compounds produced by bacteria and bacterial interactions. It is difficult to predict the presence or absence of oral malodour based on the abundances of specific species and their ... ...

    Abstract Background: Oral malodour is mainly caused by volatile sulphur compounds produced by bacteria and bacterial interactions. It is difficult to predict the presence or absence of oral malodour based on the abundances of specific species and their combinations. This paper presents an effective way of deep learning approach to predicting the oral malodour from salivary microbiota.
    Methods: The 16S rRNA genes from saliva samples of 90 subjects (45 had no or weak oral malodour, and 45 had marked oral malodour) were amplified, and gene sequence analysis was carried out. Deep learning classified oral malodour and healthy breath based on the resultant abundances of operational taxonomic units (OTUs) RESULTS: A discrimination classifier model was constructed by profiling OTUs and calculating their relative abundance in saliva samples from 90 subjects. Our deep learning model achieved a predictive accuracy of 97%, compared to the 79% obtained with a support vector machine.
    Conclusion: This approach is expected to be useful in screening the saliva for prediction of oral malodour before visits to specialist clinics.
    MeSH term(s) Deep Learning ; Female ; Halitosis/diagnosis ; Halitosis/etiology ; Halitosis/microbiology ; High-Throughput Nucleotide Sequencing ; Humans ; Male ; Microbiota/genetics ; Middle Aged ; RNA, Ribosomal, 16S/genetics ; Saliva/microbiology
    Chemical Substances RNA, Ribosomal, 16S
    Language English
    Publishing date 2018-07-31
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2091511-1
    ISSN 1472-6831 ; 1472-6831
    ISSN (online) 1472-6831
    ISSN 1472-6831
    DOI 10.1186/s12903-018-0591-6
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: An Application of X-Ray Fluorescence as Process Analytical Technology (PAT) to Monitor Particle Coating Processes.

    Nakano, Yoshio / Katakuse, Yoshimitsu / Azechi, Yasutaka

    Chemical & pharmaceutical bulletin

    2018  Volume 66, Issue 6, Page(s) 596–601

    Abstract: An attempt to apply X-Ray Fluorescence (XRF) analysis to evaluate small particle coating process as a Process Analytical Technologies (PAT) was made. The XRF analysis was used to monitor coating level in small particle coating process with at-line manner. ...

    Abstract An attempt to apply X-Ray Fluorescence (XRF) analysis to evaluate small particle coating process as a Process Analytical Technologies (PAT) was made. The XRF analysis was used to monitor coating level in small particle coating process with at-line manner. The small particle coating process usually consists of multiple coating processes. This study was conducted by a simple coating particles prepared by first coating of a model compound (DL-methionine) and second coating by talc on spherical microcrystalline cellulose cores. The particles with two layered coating are enough to demonstrate the small particle coating process. From the result by the small particle coating process, it was found that the XRF signal played different roles, resulting that XRF signals by first coating (layering) and second coating (mask coating) could demonstrate the extent with different mechanisms for the coating process. Furthermore, the particle coating of the different particle size has also been investigated to evaluate size effect of these coating processes. From these results, it was concluded that the XRF could be used as a PAT in monitoring particle coating processes and become powerful tool in pharmaceutical manufacturing.
    MeSH term(s) Cellulose/chemistry ; Drug Industry ; Methionine/chemistry ; Particle Size ; Spectrometry, X-Ray Emission ; Surface Properties ; Talc/chemistry
    Chemical Substances Talc (14807-96-6) ; Cellulose (9004-34-6) ; Methionine (AE28F7PNPL)
    Language English
    Publishing date 2018-06-01
    Publishing country Japan
    Document type Journal Article
    ZDB-ID 213307-6
    ISSN 1347-5223 ; 0009-2363
    ISSN (online) 1347-5223
    ISSN 0009-2363
    DOI 10.1248/cpb.c17-00906
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Doppler trans-thoracic echocardiography for detection of pulmonary hypertension in adults.

    Tsujimoto, Yasushi / Kumasawa, Junji / Shimizu, Sayaka / Nakano, Yoshio / Kataoka, Yuki / Tsujimoto, Hiraku / Kono, Michihiko / Okabayashi, Shinji / Imura, Haruki / Mizuta, Takahiro

    The Cochrane database of systematic reviews

    2022  Volume 5, Page(s) CD012809

    Abstract: Background: Pulmonary hypertension (PH) is an important cause of morbidity and mortality, which leads to a substantial loss of exercise capacity. PH ultimately leads to right ventricular overload and subsequent heart failure and early death. Although ... ...

    Abstract Background: Pulmonary hypertension (PH) is an important cause of morbidity and mortality, which leads to a substantial loss of exercise capacity. PH ultimately leads to right ventricular overload and subsequent heart failure and early death. Although early detection and treatment of PH are recommended, due to the limited responsiveness to therapy at late disease stages, many patients are diagnosed at a later stage of the disease because symptoms and signs of PH are nonspecific at earlier stages. While direct pressure measurement with right-heart catheterisation is the clinical reference standard for PH, it is not routinely used due to its invasiveness and complications. Trans-thoracic Doppler echocardiography is less invasive, less expensive, and widely available compared to right-heart catheterisation; it is therefore recommended that echocardiography be used as an initial diagnosis method in guidelines. However, several studies have questioned the accuracy of noninvasively measured pulmonary artery pressure. There is substantial uncertainty about the diagnostic accuracy of echocardiography for the diagnosis of PH.
    Objectives: To determine the diagnostic accuracy of trans-thoracic Doppler echocardiography for detecting PH.
    Search methods: We searched MEDLINE, Embase, Web of Science Core Collection, ClinicalTrials.gov, World Health Organization International Clinical Trials Registry Platform from database inception to August 2021, reference lists of articles, and contacted study authors. We applied no restrictions on language or type of publication.
    Selection criteria: We included studies that evaluated the diagnostic accuracy of trans-thoracic Doppler echocardiography for detecting PH, where right-heart catheterisation was the reference standard. We excluded diagnostic case-control studies (two-gate design), studies where right-heart catheterisation was not the reference standard, and those in which the reference standard threshold differed from 25 mmHg. We also excluded studies that did not provide sufficient diagnostic test accuracy data (true-positive [TP], false-positive [FP], true-negative [TN], and false-negative [FN] values, based on the reference standard). We included studies that provided data from which we could extract TP, FP, TN, and FN values, based on the reference standard. Two authors independently screened and assessed the eligibility based on the titles and abstracts of records identified by the search. After the title and abstract screening, the full-text reports of all potentially eligible studies were obtained, and two authors independently assessed the eligibility of the full-text reports.
    Data collection and analysis: Two review authors independently assessed the risk of bias and extracted data from each of the included studies. We contacted the authors of the included studies to obtain missing data. We assessed the methodological quality of studies using the Quality Assessment of Diagnostic Accuracy Studies (QUADAS-2) tool. We estimated a summary receiver operating characteristic (SROC) curve by fitting a hierarchical summary ROC (HSROC) non-linear mixed model. We explored sources of heterogeneity regarding types of PH, methods to estimate the right atrial pressure, and threshold of index test to diagnose PH. All analyses were performed using the Review Manager 5, SAS and STATA statistical software.
    Main results: We included 17 studies (comprising 3656 adult patients) assessing the diagnostic accuracy of Doppler trans-thoracic echocardiography for the diagnosis of PH. The included studies were heterogeneous in terms of patient distribution of age, sex, WHO classification, setting, country, positivity threshold, and year of publication. The prevalence of PH reported in the included studies varied widely (from 6% to 88%). The threshold of index test for PH diagnosis varied widely (from 30 mmHg to 47 mmHg) and was not always prespecified. No study was assigned low risk of bias or low concern in each QUADAS-2 domain assessed. Poor reporting, especially in the index test and reference standard domains, hampered conclusive judgement about the risk of bias. There was little consistency in the thresholds used in the included studies; therefore, common thresholds contained very sparse data, which prevented us from calculating summary points of accuracy estimates. With a fixed specificity of 86% (the median specificity), the estimated sensitivity derived from the median value of specificity using HSROC model was 87% (95% confidence interval [CI]: 78% to 96%). Using a prevalence of PH of 68%, which was the median among the included studies conducted mainly in tertiary hospitals, diagnosing a cohort of 1000 adult patients under suspicion of PH would result in 88 patients being undiagnosed with PH (false negatives) and 275 patients would avoid unnecessary referral for a right-heart catheterisation (true negatives). In addition, 592 of 1000 patients would receive an appropriate and timely referral for a right-heart catheterisation (true positives), while 45 patients would be wrongly considered to have PH (false positives). Conversely, when we assumed low prevalence of PH (10%), as in the case of preoperative examinations for liver transplantation, the number of false negatives and false positives would be 13 and 126, respectively.
    Authors' conclusions: Our evidence assessment of echocardiography for the diagnosis of PH in adult patients revealed several limitations. We were unable to determine the average sensitivity and specificity at any particular index test threshold and to explain the observed variability in results. The high heterogeneity of the collected data and the poor methodological quality would constrain the implementation of this result into clinical practice. Further studies relative to the accuracy of Doppler trans-thoracic echocardiography for the diagnosis of PH in adults, that apply a rigorous methodology for conducting diagnostic test accuracy studies, are needed.
    MeSH term(s) Adult ; Echocardiography ; Echocardiography, Doppler ; Humans ; Hypertension, Pulmonary/diagnostic imaging ; Physical Examination/methods ; Sensitivity and Specificity
    Language English
    Publishing date 2022-05-09
    Publishing country England
    Document type Journal Article ; Review ; Research Support, Non-U.S. Gov't ; Systematic Review
    ISSN 1469-493X
    ISSN (online) 1469-493X
    DOI 10.1002/14651858.CD012809.pub2
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Clinical Characteristics and Diagnostic Prediction of Severe Fever with Thrombocytopenia Syndrome and Rickettsiosis in the Co-Endemic Wakayama Prefecture, Japan.

    Teramoto, Kan / Tamura, Shinobu / Yoshida, Kikuaki / Inada, Yukari / Yamashita, Yusuke / Morimoto, Masaya / Mushino, Toshiki / Koreeda, Daisuke / Miyamoto, Kyohei / Komiya, Nobuhiro / Nakano, Yoshio / Takagaki, Yusaku / Koizumi, Yusuke

    Medicina (Kaunas, Lithuania)

    2023  Volume 59, Issue 11

    Abstract: Background and ... ...

    Abstract Background and Objectives
    MeSH term(s) Adult ; Humans ; Severe Fever with Thrombocytopenia Syndrome/diagnosis ; Severe Fever with Thrombocytopenia Syndrome/epidemiology ; Phlebovirus ; Retrospective Studies ; Japan/epidemiology ; Rickettsia Infections/diagnosis ; Rickettsia Infections/epidemiology ; Scrub Typhus/complications ; Scrub Typhus/diagnosis ; Scrub Typhus/epidemiology ; Tick-Borne Diseases/diagnosis ; Exanthema
    Language English
    Publishing date 2023-11-17
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2188113-3
    ISSN 1648-9144 ; 1010-660X
    ISSN (online) 1648-9144
    ISSN 1010-660X
    DOI 10.3390/medicina59112024
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