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  1. AU="Naveira, Horacio F"
  2. AU="Heyliger, Jamie"
  3. AU="García-Fernández, Ciara"
  4. AU="Lee, Mi-Ock"
  5. AU="Pouraliakbar, Hamidreza"
  6. AU="Raina, Hema"
  7. AU="Rosenbaum, David P"
  8. AU="Paulus, Markus"
  9. AU="Nguyen, David Truong"
  10. AU="Khazanchi, Rakesh Kumar"
  11. AU="Agrò, Felice E"
  12. AU="Bücker, Bettina"
  13. AU="Steussy, Bryan W"

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  1. Artikel: On the relative roles of faster-X evolution and dominance in the establishment of intrinsic postzygotic isolating barriers.

    Naveira, Horacio F

    Genetica

    2003  Band 118, Heft 1, Seite(n) 41–50

    Abstract: The modern theory of speciation assigns a prominent role to the recessivity of genetic incompatibilities in the two rules of speciation, namely Haldane's rule and the 'large X effect', and considers that the contribution of faster evolution of the X ... ...

    Abstract The modern theory of speciation assigns a prominent role to the recessivity of genetic incompatibilities in the two rules of speciation, namely Haldane's rule and the 'large X effect', and considers that the contribution of faster evolution of the X versus the autosomes to those patterns is generally of relatively minor importance. By extending Turelli and Orr's previous analysis of the model of two-locus Dobzhansky-Muller incompatibilities, I first show that when the X and the autosomes evolve at the same rate, the two dominance parameters involved in that model are not equally important for the declaration of a large X effect, but that the degree of recessivity of homozygous-homozygous incompatibilities is the major determinant for such a declaration. When the X evolves faster than the autosomes, the model obviously predicts that the importance of both dominance parameters will progressively vanish. It is then of importance to obtain estimates of the relative evolutionary rate of X-linked incompatibility loci. Several different procedures to obtain such estimates from the perspective of the large X effect are suggested. The application of the appropriate test to the only suitable data from Drosophila hybridizations so far available leads to the conclusion that the X actually evolves at least 2.5 times faster than the autosomes, as far as hybrid male sterility determinants are concerned, thus making dominance considerations absolutely irrelevant. Notwithstanding the necessity of further tests, the relative roles currently assigned to faster-X evolution and dominance in the theory of speciation should be revised, giving due prominence to faster-X evolution, at least for hybrid male sterility in the genus Drosophila.
    Mesh-Begriff(e) Animals ; Drosophila/genetics ; Evolution, Molecular ; Fertility ; Genes, Dominant ; Models, Genetic ; X Chromosome/genetics
    Sprache Englisch
    Erscheinungsdatum 2003-03-20
    Erscheinungsland Netherlands
    Dokumenttyp Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2165-9
    ISSN 0016-6707
    ISSN 0016-6707
    DOI 10.1023/a:1022978222021
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  2. Artikel: Paleogenomic record of the extinction of human endogenous retrovirus ERV9.

    López-Sánchez, Paula / Costas, Javier C / Naveira, Horacio F

    Journal of virology

    2005  Band 79, Heft 11, Seite(n) 6997–7004

    Abstract: An outstanding question of genome evolution is what stops the invasion of a host genome by transposable elements (TEs). The human genome, harboring the remnants of many extinct TE families, offers an extraordinary opportunity to investigate this problem. ...

    Abstract An outstanding question of genome evolution is what stops the invasion of a host genome by transposable elements (TEs). The human genome, harboring the remnants of many extinct TE families, offers an extraordinary opportunity to investigate this problem. ERV9 is an endogenous retrovirus repeatedly mobilized during primate evolution, 15 to 6 million years ago (MYA), which left a trace of over a hundred provirus-like copies and at least 4,000 solitary long terminal repeats (LTRs) in the human genome. Then, its proliferation ceased for unknown reasons, and the family went extinct. We have made a detailed reconstruction of its last active subfamily, ERV9_XII, by examining 115 solitary LTRs from it. These insertions were grouped into 11 sets according to shared nucleotide variants, which could be placed in a sequential order of 10 to 6 MYA. At least 75% of the subfamily was produced 8 to 6 MYA, during a stage of intense proliferation. With new analytical tools, we show that the youngest and most prolific sets may have been produced by effectively instantaneous expansions of corresponding single-sequence variants. The extinction of this family apparently was not a consequence of its slow gradual degeneration, but the outcome of the fixation of specific restrictive alleles in the human-chimpanzee ancestral population. Three species-specific insertions (two in humans and one in chimpanzees) were identified, further supporting that extinction took place when these two species were beginning to diverge. These are the only fixed differences of this kind so far observed between humans and chimpanzees, apart from those belonging to the human endogenous retrovirus K family.
    Mesh-Begriff(e) Animals ; Base Sequence ; DNA Transposable Elements/genetics ; DNA, Viral/genetics ; DNA, Viral/isolation & purification ; Endogenous Retroviruses/classification ; Endogenous Retroviruses/genetics ; Endogenous Retroviruses/isolation & purification ; Evolution, Molecular ; Genetic Variation ; Genome, Human ; Humans ; Molecular Sequence Data ; Paleontology ; Pan troglodytes/genetics ; Pan troglodytes/virology ; Phylogeny ; Primates/genetics ; Primates/virology ; Sequence Homology, Amino Acid ; Terminal Repeat Sequences ; Time Factors
    Chemische Substanzen DNA Transposable Elements ; DNA, Viral
    Sprache Englisch
    Erscheinungsdatum 2005-06
    Erscheinungsland United States
    Dokumenttyp Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 80174-4
    ISSN 1098-5514 ; 0022-538X
    ISSN (online) 1098-5514
    ISSN 0022-538X
    DOI 10.1128/JVI.79.11.6997-7004.2005
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  3. Artikel: Evolution of the mdg1 lineage of the Ty3/gypsy group of LTR retrotransposons in Anopheles gambiae.

    Tubío, Jose Manuel C / Costas, Javier C / Naveira, Horacio F

    Gene

    2004  Band 330, Seite(n) 123–131

    Abstract: So far, only a few retrovirus-like transposable elements (TEs) have been reported in Anopheles mosquitoes, although a large fraction of their genomes is made up of these middle repetitive sequences. By screening the A. gambiae genome databases, we have ... ...

    Abstract So far, only a few retrovirus-like transposable elements (TEs) have been reported in Anopheles mosquitoes, although a large fraction of their genomes is made up of these middle repetitive sequences. By screening the A. gambiae genome databases, we have found 10 element families belonging to the mdg1 lineage of the Ty3/gypsy group of long terminal repeat (LTR) retrotransposons. These Anopheles families constitute a sister clade of the Drosophila representatives of this same lineage. According to the phylogenetic reconstruction of their open reading frame (ORF)2 enzymatic domains, the analysis of patterns of nucleotide substitution therein, and the estimation of the age of particular insertions, all these elements must have been active until quite recently, and some of them must be very young. On the other hand, the fact that all these element families are primarily composed of fragmentary copies (mostly solos) or full-length copies with inactivating mutations indicates that their turnover rate has been probably very low. Finally, incongruent phylogenies obtained from different regions of the elements strongly suggest that recombination has played a significant role in their evolutionary history.
    Mesh-Begriff(e) Animals ; Anopheles/classification ; Anopheles/genetics ; Computational Biology/methods ; Databases, Nucleic Acid ; Evolution, Molecular ; Genome ; Phylogeny ; Retroelements/genetics ; Terminal Repeat Sequences/genetics
    Chemische Substanzen Retroelements
    Sprache Englisch
    Erscheinungsdatum 2004-04-14
    Erscheinungsland Netherlands
    Dokumenttyp Journal Article
    ZDB-ID 391792-7
    ISSN 1879-0038 ; 0378-1119
    ISSN (online) 1879-0038
    ISSN 0378-1119
    DOI 10.1016/j.gene.2004.01.012
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  4. Artikel: Genome Sequence of Aedes aegypti, a Major Arbovirus Vector

    Nene, Vishvanath / Amedeo, Paolo / Arensburger, Peter / Atkinson, Peter W / Bidwell, Shelby / Biedler, Jim / Birney, Ewan / Birren, Bruce / Bonaldo, Maria F / Brown, Susan E / Bruggner, Robert V / Campbell, Kathryn S / Collins, Frank H / Costas, Javier / Coy, Monique R / Crabtree, Jonathan / Crawford, Matt / deBruyn, Becky / DeCaprio, David /
    Dimopoulos, George / Eiglmeier, Karin / Eisenstadt, Eric / El-Dorry, Hamza / Fraser-Liggett, Claire M / Galagan, James / Gelbart, William M / Gomes, Suely L / Grabherr, Manfred / Haas, Brian / Hammond, Martin / Hannick, Linda I / Hill, Catherine A / Hogan, James R / Hogenkamp, David G / Holmes, Michael H / Jaffe, David / Johnston, J. Spencer / Kennedy, Ryan C / Knudson, Dennis L / Kodira, Chinnappa / Koo, Hean / Kravitz, Saul / Kriventseva, Evgenia V / Kulp, David / LaButti, Kurt / Lawson, Daniel / Lee, Eduardo / Lee, Norman H / Li, Song / Lobo, Neil F / Loftus, Brendan / Lovin, Diane D / Mao, Chunhong / Mauceli, Evan / Megy, Karyn / Menck, Carlos F.M / Miller, Jason R / Montgomery, Philip / Mori, Akio / Nascimento, Ana L / Naveira, Horacio F / Nusbaum, Chad / O'Leary, Sinéad / Orvis, Joshua / Paulsen, Ian T / Pertea, Mihaela / Quesneville, Hadi / Raikhel, Alexander S / Reidenbach, Kyanne R / Ren, Quinghu / Rogers, Yu-Hui / Roth, Charles W / Salzberg, Steven L / Schatz, Michael / Schneider, Jennifer R / Severson, David W / Shumway, Martin / Sinkins, Steven P / Soares, Marcelo B / Stanke, Mario / Stinson, Eric O / Tu, Zhijian (Jake) / Tubio, Jose M.C / VanZee, Janice P / Verjovski-Almeida, Sergio / Werner, Doreen / White, Owen / Wortman, Jennifer R / Wyder, Stefan / Xi, Zhiyong / Zdobnov, Evgeny M / Zeng, Qiandong / Zhao, Qi / Zhao, Yongmei / Zhu, Jingsong

    Science. 2007 June 22, v. 316, no. 5832

    2007  

    Abstract: We present a draft sequence of the genome of Aedes aegypti, the primary vector for yellow fever and dengue fever, which at ~1376 million base pairs is about 5 times the size of the genome of the malaria vector Anopheles gambiae. Nearly 50% of the Ae. ... ...

    Abstract We present a draft sequence of the genome of Aedes aegypti, the primary vector for yellow fever and dengue fever, which at ~1376 million base pairs is about 5 times the size of the genome of the malaria vector Anopheles gambiae. Nearly 50% of the Ae. aegypti genome consists of transposable elements. These contribute to a factor of ~4 to 6 increase in average gene length and in sizes of intergenic regions relative to An. gambiae and Drosophila melanogaster. Nonetheless, chromosomal synteny is generally maintained among all three insects, although conservation of orthologous gene order is higher (by a factor of ~2) between the mosquito species than between either of them and the fruit fly. An increase in genes encoding odorant binding, cytochrome P450, and cuticle domains relative to An. gambiae suggests that members of these protein families underpin some of the biological differences between the two mosquito species.
    Schlagwörter Aedes aegypti ; Anopheles gambiae ; cytochrome P-450 ; dengue ; Drosophila melanogaster ; fruit flies ; genes ; insect vectors ; intergenic DNA ; odor compounds ; transposons ; Yellow fever virus
    Sprache Englisch
    Erscheinungsverlauf 2007-0622
    Umfang p. 1718-1723.
    Erscheinungsort American Association for the Advancement of Science
    Dokumenttyp Artikel
    ZDB-ID 128410-1
    ISSN 1095-9203 ; 0036-8075
    ISSN (online) 1095-9203
    ISSN 0036-8075
    DOI 10.1126/science.1138878
    Datenquelle NAL Katalog (AGRICOLA)

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  5. Artikel ; Online: Genome sequence of Aedes aegypti, a major arbovirus vector.

    Nene, Vishvanath / Wortman, Jennifer R / Lawson, Daniel / Haas, Brian / Kodira, Chinnappa / Tu, Zhijian Jake / Loftus, Brendan / Xi, Zhiyong / Megy, Karyn / Grabherr, Manfred / Ren, Quinghu / Zdobnov, Evgeny M / Lobo, Neil F / Campbell, Kathryn S / Brown, Susan E / Bonaldo, Maria F / Zhu, Jingsong / Sinkins, Steven P / Hogenkamp, David G /
    Amedeo, Paolo / Arensburger, Peter / Atkinson, Peter W / Bidwell, Shelby / Biedler, Jim / Birney, Ewan / Bruggner, Robert V / Costas, Javier / Coy, Monique R / Crabtree, Jonathan / Crawford, Matt / Debruyn, Becky / Decaprio, David / Eiglmeier, Karin / Eisenstadt, Eric / El-Dorry, Hamza / Gelbart, William M / Gomes, Suely L / Hammond, Martin / Hannick, Linda I / Hogan, James R / Holmes, Michael H / Jaffe, David / Johnston, J Spencer / Kennedy, Ryan C / Koo, Hean / Kravitz, Saul / Kriventseva, Evgenia V / Kulp, David / Labutti, Kurt / Lee, Eduardo / Li, Song / Lovin, Diane D / Mao, Chunhong / Mauceli, Evan / Menck, Carlos F M / Miller, Jason R / Montgomery, Philip / Mori, Akio / Nascimento, Ana L / Naveira, Horacio F / Nusbaum, Chad / O'leary, Sinéad / Orvis, Joshua / Pertea, Mihaela / Quesneville, Hadi / Reidenbach, Kyanne R / Rogers, Yu-Hui / Roth, Charles W / Schneider, Jennifer R / Schatz, Michael / Shumway, Martin / Stanke, Mario / Stinson, Eric O / Tubio, Jose M C / Vanzee, Janice P / Verjovski-Almeida, Sergio / Werner, Doreen / White, Owen / Wyder, Stefan / Zeng, Qiandong / Zhao, Qi / Zhao, Yongmei / Hill, Catherine A / Raikhel, Alexander S / Soares, Marcelo B / Knudson, Dennis L / Lee, Norman H / Galagan, James / Salzberg, Steven L / Paulsen, Ian T / Dimopoulos, George / Collins, Frank H / Birren, Bruce / Fraser-Liggett, Claire M / Severson, David W

    Science (New York, N.Y.)

    2007  Band 316, Heft 5832, Seite(n) 1718–1723

    Abstract: We present a draft sequence of the genome of Aedes aegypti, the primary vector for yellow fever and dengue fever, which at approximately 1376 million base pairs is about 5 times the size of the genome of the malaria vector Anopheles gambiae. Nearly 50% ... ...

    Abstract We present a draft sequence of the genome of Aedes aegypti, the primary vector for yellow fever and dengue fever, which at approximately 1376 million base pairs is about 5 times the size of the genome of the malaria vector Anopheles gambiae. Nearly 50% of the Ae. aegypti genome consists of transposable elements. These contribute to a factor of approximately 4 to 6 increase in average gene length and in sizes of intergenic regions relative to An. gambiae and Drosophila melanogaster. Nonetheless, chromosomal synteny is generally maintained among all three insects, although conservation of orthologous gene order is higher (by a factor of approximately 2) between the mosquito species than between either of them and the fruit fly. An increase in genes encoding odorant binding, cytochrome P450, and cuticle domains relative to An. gambiae suggests that members of these protein families underpin some of the biological differences between the two mosquito species.
    Mesh-Begriff(e) Aedes/genetics ; Aedes/metabolism ; Animals ; Anopheles/genetics ; Anopheles/metabolism ; Arboviruses ; Base Sequence ; DNA Transposable Elements ; Dengue/prevention & control ; Dengue/transmission ; Drosophila melanogaster/genetics ; Female ; Genes, Insect ; Genome, Insect ; Humans ; Insect Proteins/genetics ; Insect Vectors/genetics ; Insect Vectors/metabolism ; Male ; Membrane Transport Proteins/genetics ; Molecular Sequence Data ; Multigene Family ; Protein Structure, Tertiary/genetics ; Sequence Analysis, DNA ; Sex Characteristics ; Sex Determination Processes ; Species Specificity ; Synteny ; Transcription, Genetic ; Yellow Fever/prevention & control ; Yellow Fever/transmission
    Chemische Substanzen DNA Transposable Elements ; Insect Proteins ; Membrane Transport Proteins
    Sprache Englisch
    Erscheinungsdatum 2007-05-17
    Erscheinungsland United States
    Dokumenttyp Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 128410-1
    ISSN 1095-9203 ; 0036-8075
    ISSN (online) 1095-9203
    ISSN 0036-8075
    DOI 10.1126/science.1138878
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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