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  1. Article ; Online: Porous honeycomb film membranes enhance endothelial barrier integrity in human vascular wall bilayer model compared to standard track-etched membranes.

    Ebrahim, Neven A / Mwizerwa, Olive N / Ekwueme, Emmanuel C / Muss, Tessa E / Ersland, Erik E / Oba, Takahiro / Oku, Keisuke / Nishino, Masafumi / Hikimoto, Daichi / Miyoshi, Hayato / Tomotoshi, Kimihiko / Neville, Craig M / Sundback, Cathryn A

    Journal of biomedical materials research. Part A

    2023  Volume 111, Issue 5, Page(s) 701–713

    Abstract: In vitro vascular wall bilayer models for drug testing and disease modeling must emulate the physical and biological properties of healthy vascular tissue and its endothelial barrier function. Both endothelial cell (EC)-vascular smooth muscle cell (SMC) ... ...

    Abstract In vitro vascular wall bilayer models for drug testing and disease modeling must emulate the physical and biological properties of healthy vascular tissue and its endothelial barrier function. Both endothelial cell (EC)-vascular smooth muscle cell (SMC) interaction across the internal elastic lamina (IEL) and blood vessel stiffness impact endothelial barrier integrity. Polymeric porous track-etched membranes (TEM) typically represent the IEL in laboratory vascular bilayer models. However, TEM stiffness exceeds that of diseased blood vessels, and the membrane pore architecture limits EC-SMC interaction. The mechanical properties of compliant honeycomb film (HCF) membranes better simulate the Young's modulus of healthy blood vessels, and HCFs are thinner (4 vs. 10 μm) and more porous (57 vs. 6.5%) than TEMs. We compared endothelial barrier integrity in vascular wall bilayer models with human ECs and SMCs statically cultured on opposite sides of HCFs and TEMs (5 μm pores) for up to 12 days. Highly segregated localization of tight junction (ZO-1) and adherens junction (VE-cadherin) proteins and quiescent F-actin cytoskeletons demonstrated superior and earlier maturation of interendothelial junctions. Quantifying barrier integrity based on transendothelial electrical resistance (TEER), membranes showed only minor but significant TEER differences despite enhanced junctional protein localization on HCF. Elongated ECs on HCF likely experienced greater paracellular diffusion than blocky ECs on TEM. Also, larger populations of plaques of connexin 43 subunit-containing gap junctions suggested enhanced EC-SMC communication across the more porous, thinner HCF. Compared with standard TEMs, engineered vascular wall bilayers cultured on HCFs better replicate physiologic endothelial barrier integrity.
    MeSH term(s) Humans ; Porosity ; Endothelial Cells/metabolism ; Endothelium, Vascular ; Cell Communication ; Tight Junctions/physiology ; Cells, Cultured ; Adherens Junctions/physiology
    Language English
    Publishing date 2023-02-21
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2099989-6
    ISSN 1552-4965 ; 1549-3296 ; 0021-9304
    ISSN (online) 1552-4965
    ISSN 1549-3296 ; 0021-9304
    DOI 10.1002/jbm.a.37517
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Drug Transcellular Transport Assay Using a High Porosity Honeycomb Film.

    Nakazono, Yuya / Arakawa, Hiroshi / Nishino, Masafumi / Yamaki, Ikumi / Oba, Takahiro / Tomotoshi, Kimihiko / Kakinuma, Chihaya / Ogihara, Takuo / Tamai, Ikumi

    Biological & pharmaceutical bulletin

    2021  Volume 44, Issue 5, Page(s) 635–641

    Abstract: In vitro transport studies across cells grown on culture inserts are widely used for evaluating pharmacokinetic characteristics such as intestinal membrane permeability. However, measurements of the apparent permeability coefficient of highly lipophilic ... ...

    Abstract In vitro transport studies across cells grown on culture inserts are widely used for evaluating pharmacokinetic characteristics such as intestinal membrane permeability. However, measurements of the apparent permeability coefficient of highly lipophilic compounds are often limited by transport across the membrane filters, not by transport across the cultured cells. To overcome this concern, we have investigated the utility of a high-porosity membrane honeycomb film (HCF) for transcellular transport studies. Using the HCF inserts, the apparent permeability coefficient (P
    MeSH term(s) Caco-2 Cells ; Cell Culture Techniques/instrumentation ; Drug Evaluation, Preclinical/instrumentation ; Drug Evaluation, Preclinical/methods ; Humans ; Hydrophobic and Hydrophilic Interactions ; Permeability ; Rhodamine 123/pharmacokinetics
    Chemical Substances Rhodamine 123 (1N3CZ14C5O)
    Language English
    Publishing date 2021-05-05
    Publishing country Japan
    Document type Journal Article
    ZDB-ID 1150271-x
    ISSN 1347-5215 ; 0918-6158
    ISSN (online) 1347-5215
    ISSN 0918-6158
    DOI 10.1248/bpb.b20-00925
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Human Vascular Wall Microfluidic Model for Preclinical Evaluation of Drug-Induced Vascular Injury.

    Ersland, Erik / Ebrahim, Neven / Mwizerwa, Olive / Oba, Takahiro / Oku, Keisuke / Nishino, Masafumi / Hikimoto, Daichi / Miyoshi, Hayato / Tomotoshi, Kimihiko / Rahmanian, Omid / Ekwueme, Emmanuel / Neville, Craig / Sundback, Cathryn

    Tissue engineering. Part C, Methods

    2021  Volume 28, Issue 2, Page(s) 83–92

    Abstract: Drug-induced vascular injury (DIVI) in preclinical animal models often leads to candidate compound termination during drug development. DIVI has not been documented in human clinical trials with drugs that cause DIVI in preclinical animals. A robust ... ...

    Abstract Drug-induced vascular injury (DIVI) in preclinical animal models often leads to candidate compound termination during drug development. DIVI has not been documented in human clinical trials with drugs that cause DIVI in preclinical animals. A robust human preclinical assay for DIVI is needed as an early vascular injury screen. A human vascular wall microfluidic tissue chip was developed with a human umbilical vein endothelial cell (HUVEC)-umbilical artery smooth muscle cell (vascular smooth muscle cell, VSMC) bilayer matured under physiological shear stress. Optimized temporal flow profiles produced HUVEC-VSMC bilayers with quiescent endothelial cell (EC) monolayers, EC tight junctions, and contractile VSMC morphology. Dose-response testing (3-30 μM concentration) was conducted with minoxidil and tadalafil vasodilators. Both drugs have demonstrated preclinical DIVI but lack clinical evidence. The permeability of severely damaged engineered bilayers (30 μM tadalafil) was 4.1 times that of the untreated controls. Immunohistochemical protein assays revealed contrasting perspectives on tadalafil and minoxidil-induced damage. Tadalafil impacted the endothelial monolayer with minor injury to the contractile VSMCs, whereas minoxidil demonstrated minor EC barrier injury but damaged VSMCs and activated ECs in a dose-response manner. This proof-of-concept human vascular wall bilayer model of DIVI is a critical step toward developing a preclinical human screening assay for drug development. Impact statement More than 90% of drug candidates fail during clinical trials due to human efficacy and toxicity concerns. Preclinical studies rely heavily on animal models, although animal toxicity and drug metabolism responses often differ from humans. During the drug development process, perfused
    MeSH term(s) Animals ; Drug Evaluation, Preclinical ; Endothelial Cells ; Humans ; Microfluidics ; Myocytes, Smooth Muscle ; Vascular System Injuries/chemically induced
    Language English
    Publishing date 2021-12-25
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 2420585-0
    ISSN 1937-3392 ; 1937-3384
    ISSN (online) 1937-3392
    ISSN 1937-3384
    DOI 10.1089/ten.TEC.2021.0227
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Isolation of a high malic and low acetic acid-producing sake yeast Saccharomyces cerevisiae strain screened from respiratory inhibitor 2,4-dinitrophenol (DNP)-resistant strains.

    Kosugi, Shingo / Kiyoshi, Keiji / Oba, Takahiro / Kusumoto, Kenichi / Kadokura, Toshimori / Nakazato, Atsumi / Nakayama, Shunichi

    Journal of bioscience and bioengineering

    2014  Volume 117, Issue 1, Page(s) 39–44

    Abstract: We isolated 2,4-dinitrophenol (DNP)-resistant sake yeast strains by UV mutagenesis. Among the DNP-resistant mutants, we focused on strains exhibiting high malic acid and low acetic acid production. The improved organic acid composition is unlikely to be ... ...

    Abstract We isolated 2,4-dinitrophenol (DNP)-resistant sake yeast strains by UV mutagenesis. Among the DNP-resistant mutants, we focused on strains exhibiting high malic acid and low acetic acid production. The improved organic acid composition is unlikely to be under the control of enzyme activities related to malic and acetic acid synthesis pathways. Instead, low mitochondrial activity was observed in DNP-resistant mutants, indicating that the excess pyruvic acid generated during glycolysis is not metabolized in the mitochondria but converted to malic acid in the cytosol. In addition, the NADH/NAD(+) ratio of the DNP-resistant strains was higher than that of the parental strain K901. These results suggest that the increased NADH/NAD(+) ratio together with the low mitochondrial activity alter the organic acid composition because malic acid synthesis requires NADH, while acetic acid uses NAD(+).
    MeSH term(s) 2,4-Dinitrophenol/pharmacology ; Acetic Acid/metabolism ; Cytosol/metabolism ; Drug Resistance, Fungal ; Ethanol/metabolism ; Malates/metabolism ; Mitochondria/drug effects ; Mitochondria/metabolism ; Mutagenesis ; NAD/metabolism ; Pyruvic Acid/metabolism ; Saccharomyces cerevisiae/drug effects ; Saccharomyces cerevisiae/isolation & purification ; Saccharomyces cerevisiae/metabolism
    Chemical Substances Malates ; NAD (0U46U6E8UK) ; Ethanol (3K9958V90M) ; malic acid (817L1N4CKP) ; Pyruvic Acid (8558G7RUTR) ; 2,4-Dinitrophenol (Q13SKS21MN) ; Acetic Acid (Q40Q9N063P)
    Language English
    Publishing date 2014-01
    Publishing country Japan
    Document type Journal Article
    ZDB-ID 1465387-4
    ISSN 1347-4421 ; 1389-1723
    ISSN (online) 1347-4421
    ISSN 1389-1723
    DOI 10.1016/j.jbiosc.2013.06.016
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: Properties of a High Malic Acid-Producing Strains of Saccharomyces cerevisiae Isolated from Sake Mash

    OBA, Takahiro / SUENAGA, Hikaru / NAKAYAMA, Shunichi / MITSUIKI, Shinji / KITAGAKI, Hiroshi / TASHIRO, Kosuke / KUHARA, Satoru

    Bioscience, biotechnology, and biochemistry. 2011 Oct. 23, v. 75, no. 10

    2011  

    Abstract: We characterized high malic acid-producing strains of Saccharomyces cerevisiae isolated from sake mash. We compared the gene expression of these strains with those of the parental strain by DNA microarray, and found that stress response genes, such as ... ...

    Abstract We characterized high malic acid-producing strains of Saccharomyces cerevisiae isolated from sake mash. We compared the gene expression of these strains with those of the parental strain by DNA microarray, and found that stress response genes, such as HSP12, were commonly upregulated in the high malate-producing strains, whereas thiamine synthesis genes, such as THI4 and SNZ2, were downregulated in these strains.
    Keywords DNA microarrays ; Saccharomyces cerevisiae ; biotechnology ; gene expression ; mash ; sake ; stress response ; thiamin
    Language English
    Dates of publication 2011-1023
    Size p. 2025-2029.
    Publishing place Japan Society for Bioscience, Biotechnology, and Agrochemistry
    Document type Article
    Note NAL-light
    ZDB-ID 1106450-x
    ISSN 1347-6947 ; 0916-8451
    ISSN (online) 1347-6947
    ISSN 0916-8451
    DOI 10.1271/bbb.110262
    Database NAL-Catalogue (AGRICOLA)

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  6. Article ; Online: Characteristics of the high malic acid production mechanism in Saccharomyces cerevisiae sake yeast strain No. 28.

    Nakayama, Shunichi / Tabata, Ken / Oba, Takahiro / Kusumoto, Kenichi / Mitsuiki, Shinji / Kadokura, Toshimori / Nakazato, Atsumi

    Journal of bioscience and bioengineering

    2012  Volume 114, Issue 3, Page(s) 281–285

    Abstract: We characterized a high malic acid production mechanism in sake yeast strain No. 28. No considerable differences in the activity of the enzymes that were involved in malic acid synthesis were observed between strain No. 28 and its parent strain, K1001. ... ...

    Abstract We characterized a high malic acid production mechanism in sake yeast strain No. 28. No considerable differences in the activity of the enzymes that were involved in malic acid synthesis were observed between strain No. 28 and its parent strain, K1001. However, compared with strain K1001, which actively took up rhodamine 123 during staining, the cells of strain No. 28 were only lightly stained, even when cultured in high glucose concentrations. In addition, malic acid production by the respiratory-deficient strain of K1001 was 2.5-fold higher than that of the wild-type K1001 and wild-type No. 28. The findings of this study demonstrated that the high malic acid production by strain No. 28 is attributed to the suppression of mitochondrial activity.
    MeSH term(s) Cell Respiration/drug effects ; Extracellular Space/chemistry ; Extracellular Space/drug effects ; Extracellular Space/metabolism ; Fermentation/drug effects ; Glucose/metabolism ; Glucose/pharmacology ; Malates/metabolism ; Mitochondria/drug effects ; Mitochondria/metabolism ; Saccharomyces cerevisiae/classification ; Saccharomyces cerevisiae/drug effects ; Saccharomyces cerevisiae/enzymology ; Saccharomyces cerevisiae/metabolism ; Wine/microbiology
    Chemical Substances Malates ; malic acid (817L1N4CKP) ; Glucose (IY9XDZ35W2)
    Language English
    Publishing date 2012-09
    Publishing country Japan
    Document type Journal Article
    ZDB-ID 1465387-4
    ISSN 1347-4421 ; 1389-1723
    ISSN (online) 1347-4421
    ISSN 1389-1723
    DOI 10.1016/j.jbiosc.2012.04.003
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Variations in mitochondrial membrane potential correlate with malic acid production by natural isolates of Saccharomyces cerevisiae sake strains.

    Oba, Takahiro / Kusumoto, Kenichi / Kichise, Yuki / Izumoto, Eiji / Nakayama, Shunichi / Tashiro, Kosuke / Kuhara, Satoru / Kitagaki, Hiroshi

    FEMS yeast research

    2014  Volume 14, Issue 5, Page(s) 789–796

    Abstract: Research on the relationship between mitochondrial membrane potential and fermentation profile is being intensely pursued because of the potential for developing advanced fermentation technologies. In the present study, we isolated naturally occurring ... ...

    Abstract Research on the relationship between mitochondrial membrane potential and fermentation profile is being intensely pursued because of the potential for developing advanced fermentation technologies. In the present study, we isolated naturally occurring strains of yeast from sake mash that produce high levels of malic acid and demonstrate that variations in mitochondrial membrane potential correlate with malic acid production. To define the underlying biochemical mechanism, we determined the activities of enzymes required for malic acid synthesis and found that pyruvate carboxylase and malate dehydrogenase activities in strains that produce high levels of malic acid were elevated compared with the standard sake strain K901. These results inspired us to hypothesize that decreased mitochondrial membrane potential was responsible for increased malic acid synthesis, and we present data supporting this hypothesis. Thus, the mitochondrial membrane potential of high malic acid producers was lower compared with standard strains. We conclude that mitochondrial membrane potential correlates with malic acid production.
    MeSH term(s) Fermentation ; Malate Dehydrogenase/metabolism ; Malates/metabolism ; Membrane Potential, Mitochondrial ; Pyruvate Carboxylase/metabolism ; Saccharomyces cerevisiae/metabolism ; Saccharomyces cerevisiae/physiology ; Saccharomyces cerevisiae Proteins/metabolism
    Chemical Substances Malates ; Saccharomyces cerevisiae Proteins ; malic acid (817L1N4CKP) ; Malate Dehydrogenase (EC 1.1.1.37) ; Pyruvate Carboxylase (EC 6.4.1.1)
    Language English
    Publishing date 2014-08
    Publishing country England
    Document type Journal Article
    ZDB-ID 2036775-2
    ISSN 1567-1364 ; 1567-1356
    ISSN (online) 1567-1364
    ISSN 1567-1356
    DOI 10.1111/1567-1364.12170
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Properties of a high malic acid-producing strains of Saccharomyces cerevisiae isolated from sake mash.

    Oba, Takahiro / Suenaga, Hikaru / Nakayama, Shunichi / Mitsuiki, Shinji / Kitagaki, Hiroshi / Tashiro, Kosuke / Kuhara, Satoru

    Bioscience, biotechnology, and biochemistry

    2011  Volume 75, Issue 10, Page(s) 2025–2029

    Abstract: We characterized high malic acid-producing strains of Saccharomyces cerevisiae isolated from sake mash. We compared the gene expression of these strains with those of the parental strain by DNA microarray, and found that stress response genes, such as ... ...

    Abstract We characterized high malic acid-producing strains of Saccharomyces cerevisiae isolated from sake mash. We compared the gene expression of these strains with those of the parental strain by DNA microarray, and found that stress response genes, such as HSP12, were commonly upregulated in the high malate-producing strains, whereas thiamine synthesis genes, such as THI4 and SNZ2, were downregulated in these strains.
    MeSH term(s) Alcoholic Beverages/microbiology ; Fermentation ; Glucose/metabolism ; Malates/metabolism ; Oligonucleotide Array Sequence Analysis ; Saccharomyces cerevisiae/genetics ; Saccharomyces cerevisiae/isolation & purification ; Saccharomyces cerevisiae/metabolism
    Chemical Substances Malates ; malic acid (817L1N4CKP) ; Glucose (IY9XDZ35W2)
    Language English
    Publishing date 2011
    Publishing country England
    Document type Journal Article
    ZDB-ID 1106450-x
    ISSN 1347-6947 ; 0916-8451
    ISSN (online) 1347-6947
    ISSN 0916-8451
    DOI 10.1271/bbb.110262
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article: Properties of a sucrose-tolerant Mutant of Saccharomyces cerevisiae

    Oba, Takahiro / Suenaga, Hikaru / Muta, Shigeru / Tashiro, Kosuke / Kuhara, Satoru

    World journal of microbiology & biotechnology. 2008 July, v. 24, no. 7

    2008  

    Abstract: We characterized a sucrose-tolerant mutant of Saccharomyces cerevisiae, S22, that produces about four times as much acetate as the wild-type strain K9. We monitored the concentration of extracellular acetate during cultivation, and compared the gene ... ...

    Abstract We characterized a sucrose-tolerant mutant of Saccharomyces cerevisiae, S22, that produces about four times as much acetate as the wild-type strain K9. We monitored the concentration of extracellular acetate during cultivation, and compared the gene expression ratios of S22 with those of K9 using DNA microarray. We propose that the sucrose tolerance of S22 may be related to the overexpression of the ENA1, ENA2, and ENA5 genes and some cell wall mannoprotein genes, and that the high acetate productivity of S22 is related to the overexpression of the ALD4 gene and oxidative phosphorylation genes.
    Keywords Saccharomyces cerevisiae ; acetates ; cell walls ; gene overexpression ; genes ; microarray technology ; mutants ; oxidative phosphorylation ; sucrose
    Language English
    Dates of publication 2008-07
    Size p. 1233-1238.
    Publisher Springer Netherlands
    Publishing place Dordrecht
    Document type Article
    ZDB-ID 1499109-3
    ISSN 1573-0972 ; 0959-3993
    ISSN (online) 1573-0972
    ISSN 0959-3993
    DOI 10.1007/s11274-007-9576-3
    Database NAL-Catalogue (AGRICOLA)

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  10. Article: Effect of cra gene knockout together with edd and iclR genes knockout on the metabolism in Escherichia coli

    Sarkar, Dayanidhi / Siddiquee, Khandaker Al Zaid / Araúzo-Bravo, Marcos J / Oba, Takahiro / Shimizu, Kazuyuki

    Archives of microbiology. 2008 Nov., v. 190, no. 5

    2008  

    Abstract: To elucidate the physiological adaptation of Escherichia coli due to cra gene knockout, a total of 3,911 gene expressions were investigated by DNA microarray for continuous culture. About 50 genes were differentially regulated for the cra mutant. TCA ... ...

    Abstract To elucidate the physiological adaptation of Escherichia coli due to cra gene knockout, a total of 3,911 gene expressions were investigated by DNA microarray for continuous culture. About 50 genes were differentially regulated for the cra mutant. TCA cycle and glyoxylate shunt were down-regulated, while pentose phosphate (PP) pathway and Entner Doudoroff (ED) pathway were up-regulated in the cra mutant. The glucose uptake rate and the acetate production rate were increased with less acetate consumption for the cra mutant. To identify the genes controlled by Cra protein, the Cra recognition weight matrix from foot-printing data was developed and used to scan the whole genome. Several new Cra-binding sites were found, and some of the result was consistent with the DNA microarray data. The ED pathway was active in the cra mutant; we constructed cra.edd double genes knockout mutant to block this pathway, where the acetate overflowed due to the down-regulation of aceA,B and icd gene expressions. Then we further constructed cra.edd.iclR triple genes knockout mutant to direct the carbon flow through the glyoxylate pathway. The cra.edd.iclR mutant showed the least acetate production, resulting in the highest cell yield together with the activation of the glycolysis pathway, but the glucose consumption rate could not be improved.
    Language English
    Dates of publication 2008-11
    Size p. 559-571.
    Publisher Springer-Verlag
    Publishing place Berlin/Heidelberg
    Document type Article
    ZDB-ID 124824-8
    ISSN 1432-072X ; 0302-8933
    ISSN (online) 1432-072X
    ISSN 0302-8933
    DOI 10.1007/s00203-008-0406-2
    Database NAL-Catalogue (AGRICOLA)

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