LIVIVO - The Search Portal for Life Sciences

zur deutschen Oberfläche wechseln
Advanced search

Search results

Result 1 - 6 of total 6

Search options

  1. Article ; Online: Modification of the HLA-A*24:02 Peptide Binding Pocket Enhances Cognate Peptide-Binding Capacity and Antigen-Specific T Cell Activation.

    Murata, Kenji / Ly, Dalam / Saijo, Hiroshi / Matsunaga, Yukiko / Sugata, Kenji / Ihara, Fumie / Oryoji, Daisuke / Ohashi, Yota / Saso, Kayoko / Wang, Chung-Hsi / Zheng, Evey Y F / Burt, Brian D / Butler, Marcus O / Hirano, Naoto

    Journal of immunology (Baltimore, Md. : 1950)

    2022  Volume 209, Issue 8, Page(s) 1481–1491

    Abstract: The immunogenicity of a T cell Ag is correlated with the ability of its antigenic epitope to bind HLA and be stably presented to T cells. This presents a challenge for the development of effective cancer immunotherapies, as many self-derived tumor- ... ...

    Abstract The immunogenicity of a T cell Ag is correlated with the ability of its antigenic epitope to bind HLA and be stably presented to T cells. This presents a challenge for the development of effective cancer immunotherapies, as many self-derived tumor-associated epitopes elicit weak T cell responses, in part due to weak binding affinity to HLA. Traditional methods to increase peptide-HLA binding affinity involve modifying the peptide to reflect HLA allele binding preferences. Using a different approach, we sought to analyze whether the immunogenicity of wild-type peptides could be altered through modification of the HLA binding pocket. After analyzing HLA class I peptide binding pocket alignments, we identified an alanine 81 to leucine (A81L) modification within the F binding pocket of HLA-A*24:02 that was found to heighten the ability of artificial APCs to retain and present HLA-A*24:02-restricted peptides, resulting in increased T cell responses while retaining Ag specificity. This modification led to increased peptide exchange efficiencies for enhanced detection of low-avidity T cells and, when expressed on artificial APCs, resulted in greater expansion of Ag-specific T cells from melanoma-derived tumor-infiltrating lymphocytes. Our study provides an example of how modifications to the HLA binding pocket can enhance wild-type cognate peptide presentation to heighten T cell activation.
    MeSH term(s) Alanine ; Epitopes, T-Lymphocyte ; HLA-A2 Antigen ; HLA-A24 Antigen ; Leucine ; Peptides ; T-Lymphocytes
    Chemical Substances Epitopes, T-Lymphocyte ; HLA-A*24:02 antigen ; HLA-A2 Antigen ; HLA-A24 Antigen ; Peptides ; Leucine (GMW67QNF9C) ; Alanine (OF5P57N2ZX)
    Language English
    Publishing date 2022-09-09
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 3056-9
    ISSN 1550-6606 ; 0022-1767 ; 1048-3233 ; 1047-7381
    ISSN (online) 1550-6606
    ISSN 0022-1767 ; 1048-3233 ; 1047-7381
    DOI 10.4049/jimmunol.2200305
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  2. Article ; Online: Genetic Ablation of HLA Class I, Class II, and the T-cell Receptor Enables Allogeneic T Cells to Be Used for Adoptive T-cell Therapy.

    Kagoya, Yuki / Guo, Tingxi / Yeung, Brian / Saso, Kayoko / Anczurowski, Mark / Wang, Chung-Hsi / Murata, Kenji / Sugata, Kenji / Saijo, Hiroshi / Matsunaga, Yukiko / Ohashi, Yota / Butler, Marcus O / Hirano, Naoto

    Cancer immunology research

    2020  Volume 8, Issue 7, Page(s) 926–936

    Abstract: Adoptive immunotherapy can induce sustained therapeutic effects in some cancers. Antitumor T-cell grafts are often individually ... ...

    Abstract Adoptive immunotherapy can induce sustained therapeutic effects in some cancers. Antitumor T-cell grafts are often individually prepared
    MeSH term(s) Allografts ; Animals ; Antigens, CD19/immunology ; CRISPR-Cas Systems ; Cells, Cultured ; Disease Models, Animal ; Histocompatibility Antigens Class I/chemistry ; Histocompatibility Antigens Class I/genetics ; Histocompatibility Antigens Class II/chemistry ; Histocompatibility Antigens Class II/genetics ; Humans ; Immunotherapy, Adoptive/methods ; Leukocytes, Mononuclear ; Lymphocyte Activation ; Mice ; Mice, Inbred NOD ; Mice, SCID ; Neoplasms/immunology ; Neoplasms/metabolism ; Neoplasms/therapy ; Receptors, Antigen, T-Cell/antagonists & inhibitors ; Receptors, Antigen, T-Cell/genetics ; Receptors, Antigen, T-Cell/immunology ; Receptors, Chimeric Antigen/immunology
    Chemical Substances Antigens, CD19 ; Histocompatibility Antigens Class I ; Histocompatibility Antigens Class II ; Receptors, Antigen, T-Cell ; Receptors, Chimeric Antigen
    Language English
    Publishing date 2020-04-22
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2732489-8
    ISSN 2326-6074 ; 2326-6066
    ISSN (online) 2326-6074
    ISSN 2326-6066
    DOI 10.1158/2326-6066.CIR-18-0508
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  3. Article ; Online: Affinity-matured HLA class II dimers for robust staining of antigen-specific CD4

    Sugata, Kenji / Matsunaga, Yukiko / Yamashita, Yuki / Nakatsugawa, Munehide / Guo, Tingxi / Halabelian, Levon / Ohashi, Yota / Saso, Kayoko / Rahman, Muhammed A / Anczurowski, Mark / Wang, Chung-Hsi / Murata, Kenji / Saijo, Hiroshi / Kagoya, Yuki / Ly, Dalam / Burt, Brian D / Butler, Marcus O / Mak, Tak W / Hirano, Naoto

    Nature biotechnology

    2021  Volume 39, Issue 8, Page(s) 958–967

    Abstract: Peptide-major histocompatibility complex (pMHC) multimers enable the detection of antigen-specific T cells in studies ranging from vaccine efficacy to cancer immunotherapy. However, this technology is unreliable when applied to pMHC class II for the ... ...

    Abstract Peptide-major histocompatibility complex (pMHC) multimers enable the detection of antigen-specific T cells in studies ranging from vaccine efficacy to cancer immunotherapy. However, this technology is unreliable when applied to pMHC class II for the detection of CD4
    MeSH term(s) CD4 Antigens/chemistry ; CD4 Antigens/metabolism ; CD4-Positive T-Lymphocytes/chemistry ; CD4-Positive T-Lymphocytes/cytology ; CD4-Positive T-Lymphocytes/metabolism ; Cells, Cultured ; Flow Cytometry ; HLA Antigens/chemistry ; HLA Antigens/metabolism ; Histocompatibility Antigens Class II/chemistry ; Histocompatibility Antigens Class II/metabolism ; Humans ; Protein Binding ; Staining and Labeling/methods
    Chemical Substances CD4 Antigens ; HLA Antigens ; Histocompatibility Antigens Class II
    Language English
    Publishing date 2021-03-01
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 1311932-1
    ISSN 1546-1696 ; 1087-0156
    ISSN (online) 1546-1696
    ISSN 1087-0156
    DOI 10.1038/s41587-021-00836-4
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  4. Article: Endogenous DNA 3′ Blocks Are Vulnerabilities for BRCA1 and BRCA2 Deficiency and Are Reversed by the APE2 Nuclease

    Álvarez-Quilón, Alejandro / Wojtaszek, Jessica L / Mathieu, Marie-Claude / Patel, Tejas / Appel, C. Denise / Hustedt, Nicole / Rossi, Silvia Emma / Wallace, Bret D / Setiaputra, Dheva / Adam, Salomé / Ohashi, Yota / Melo, Henrique / Cho, Tiffany / Gervais, Christian / Muñoz, Ivan M / Grazzini, Eric / Young, Jordan T.F / Rouse, John / Zinda, Michael /
    Williams, R. Scott / Durocher, Daniel

    Elsevier Inc. Molecular cell. 2020 June 18, v. 78, no. 6

    2020  

    Abstract: The APEX2 gene encodes APE2, a nuclease related to APE1, the apurinic/apyrimidinic endonuclease acting in base excision repair. Loss of APE2 is lethal in cells with mutated BRCA1 or BRCA2, making APE2 a prime target for homologous recombination-defective ...

    Abstract The APEX2 gene encodes APE2, a nuclease related to APE1, the apurinic/apyrimidinic endonuclease acting in base excision repair. Loss of APE2 is lethal in cells with mutated BRCA1 or BRCA2, making APE2 a prime target for homologous recombination-defective cancers. However, because the function of APE2 in DNA repair is poorly understood, it is unclear why BRCA-deficient cells require APE2 for viability. Here we present the genetic interaction profiles of APE2, APE1, and TDP1 deficiency coupled to biochemical and structural dissection of APE2. We conclude that the main role of APE2 is to reverse blocked 3′ DNA ends, problematic lesions that preclude DNA synthesis. Our work also suggests that TOP1 processing of genomic ribonucleotides is the main source of 3′-blocking lesions relevant to APEX2-BRCA1/2 synthetic lethality. The exquisite sensitivity of BRCA-deficient cells to 3′ blocks indicates that they represent a tractable vulnerability in homologous recombination-deficient tumor cells.
    Keywords DNA ; DNA repair ; DNA replication ; cell viability ; death ; enzymes ; genes ; genomics ; neoplasm cells ; neoplasms ; ribonucleotides ; tumor suppressor proteins
    Language English
    Dates of publication 2020-0618
    Size p. 1152-1165.e8.
    Publishing place Elsevier Inc.
    Document type Article
    ZDB-ID 1415236-8
    ISSN 1097-4164 ; 1097-2765
    ISSN (online) 1097-4164
    ISSN 1097-2765
    DOI 10.1016/j.molcel.2020.05.021
    Database NAL-Catalogue (AGRICOLA)

    More links

    Kategorien

  5. Article ; Online: A conserved CCM complex promotes apoptosis non-autonomously by regulating zinc homeostasis.

    Chapman, Eric M / Lant, Benjamin / Ohashi, Yota / Yu, Bin / Schertzberg, Michael / Go, Christopher / Dogra, Deepika / Koskimäki, Janne / Girard, Romuald / Li, Yan / Fraser, Andrew G / Awad, Issam A / Abdelilah-Seyfried, Salim / Gingras, Anne-Claude / Derry, W Brent

    Nature communications

    2019  Volume 10, Issue 1, Page(s) 1791

    Abstract: Apoptotic death of cells damaged by genotoxic stress requires regulatory input from surrounding tissues. The C. elegans scaffold protein KRI-1, ortholog of mammalian KRIT1/CCM1, permits DNA damage-induced apoptosis of cells in the germline by an unknown ... ...

    Abstract Apoptotic death of cells damaged by genotoxic stress requires regulatory input from surrounding tissues. The C. elegans scaffold protein KRI-1, ortholog of mammalian KRIT1/CCM1, permits DNA damage-induced apoptosis of cells in the germline by an unknown cell non-autonomous mechanism. We reveal that KRI-1 exists in a complex with CCM-2 in the intestine to negatively regulate the ERK-5/MAPK pathway. This allows the KLF-3 transcription factor to facilitate expression of the SLC39 zinc transporter gene zipt-2.3, which functions to sequester zinc in the intestine. Ablation of KRI-1 results in reduced zinc sequestration in the intestine, inhibition of IR-induced MPK-1/ERK1 activation, and apoptosis in the germline. Zinc localization is also perturbed in the vasculature of krit1
    MeSH term(s) Animals ; Animals, Genetically Modified ; Apoptosis/physiology ; Apoptosis/radiation effects ; Apoptosis Regulatory Proteins/genetics ; Apoptosis Regulatory Proteins/metabolism ; Brain/pathology ; Brain/surgery ; Caenorhabditis elegans/physiology ; Caenorhabditis elegans/radiation effects ; Caenorhabditis elegans Proteins/genetics ; Caenorhabditis elegans Proteins/metabolism ; Cation Transport Proteins/metabolism ; Disease Models, Animal ; Gene Expression Profiling ; Hemangioma, Cavernous, Central Nervous System/genetics ; Hemangioma, Cavernous, Central Nervous System/pathology ; Hemangioma, Cavernous, Central Nervous System/surgery ; Humans ; Intracellular Signaling Peptides and Proteins/genetics ; Intracellular Signaling Peptides and Proteins/metabolism ; KRIT1 Protein/genetics ; KRIT1 Protein/metabolism ; Kruppel-Like Transcription Factors/metabolism ; MAP Kinase Signaling System/physiology ; Mice ; Mitogen-Activated Protein Kinase 1/metabolism ; Mitogen-Activated Protein Kinase 7/metabolism ; Muscle Proteins/genetics ; Muscle Proteins/metabolism ; Mutagenesis ; Mutation ; Phosphorylation/physiology ; Sequence Alignment ; Zebrafish ; Zebrafish Proteins/genetics ; Zebrafish Proteins/metabolism ; Zinc/metabolism
    Chemical Substances Apoptosis Regulatory Proteins ; Caenorhabditis elegans Proteins ; Cation Transport Proteins ; Intracellular Signaling Peptides and Proteins ; KLF-3 protein, C elegans ; KRI-1 protein, C elegans ; KRIT1 Protein ; Krit1 protein, mouse ; Kruppel-Like Transcription Factors ; Muscle Proteins ; Zebrafish Proteins ; krit1 protein, zebrafish ; Mitogen-Activated Protein Kinase 1 (EC 2.7.11.24) ; Mitogen-Activated Protein Kinase 7 (EC 2.7.11.24) ; mpk-1 protein, C elegans (EC 2.7.11.24) ; Zinc (J41CSQ7QDS)
    Language English
    Publishing date 2019-04-17
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 2553671-0
    ISSN 2041-1723 ; 2041-1723
    ISSN (online) 2041-1723
    ISSN 2041-1723
    DOI 10.1038/s41467-019-09829-z
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  6. Article ; Online: Endogenous DNA 3' Blocks Are Vulnerabilities for BRCA1 and BRCA2 Deficiency and Are Reversed by the APE2 Nuclease.

    Álvarez-Quilón, Alejandro / Wojtaszek, Jessica L / Mathieu, Marie-Claude / Patel, Tejas / Appel, C Denise / Hustedt, Nicole / Rossi, Silvia Emma / Wallace, Bret D / Setiaputra, Dheva / Adam, Salomé / Ohashi, Yota / Melo, Henrique / Cho, Tiffany / Gervais, Christian / Muñoz, Ivan M / Grazzini, Eric / Young, Jordan T F / Rouse, John / Zinda, Michael /
    Williams, R Scott / Durocher, Daniel

    Molecular cell

    2020  Volume 78, Issue 6, Page(s) 1152–1165.e8

    Abstract: The APEX2 gene encodes APE2, a nuclease related to APE1, the apurinic/apyrimidinic endonuclease acting in base excision repair. Loss of APE2 is lethal in cells with mutated BRCA1 or BRCA2, making APE2 a prime target for homologous recombination-defective ...

    Abstract The APEX2 gene encodes APE2, a nuclease related to APE1, the apurinic/apyrimidinic endonuclease acting in base excision repair. Loss of APE2 is lethal in cells with mutated BRCA1 or BRCA2, making APE2 a prime target for homologous recombination-defective cancers. However, because the function of APE2 in DNA repair is poorly understood, it is unclear why BRCA-deficient cells require APE2 for viability. Here we present the genetic interaction profiles of APE2, APE1, and TDP1 deficiency coupled to biochemical and structural dissection of APE2. We conclude that the main role of APE2 is to reverse blocked 3' DNA ends, problematic lesions that preclude DNA synthesis. Our work also suggests that TOP1 processing of genomic ribonucleotides is the main source of 3'-blocking lesions relevant to APEX2-BRCA1/2 synthetic lethality. The exquisite sensitivity of BRCA-deficient cells to 3' blocks indicates that they represent a tractable vulnerability in homologous recombination-deficient tumor cells.
    MeSH term(s) BRCA1 Protein/genetics ; BRCA1 Protein/metabolism ; BRCA2 Protein/genetics ; BRCA2 Protein/metabolism ; Cell Line ; DNA/metabolism ; DNA Damage ; DNA Repair/genetics ; DNA-(Apurinic or Apyrimidinic Site) Lyase/genetics ; DNA-(Apurinic or Apyrimidinic Site) Lyase/metabolism ; Endonucleases/genetics ; Endonucleases/metabolism ; Genes, BRCA1/physiology ; Humans ; Multifunctional Enzymes/genetics ; Multifunctional Enzymes/metabolism ; Phosphoric Diester Hydrolases/genetics ; Phosphoric Diester Hydrolases/metabolism
    Chemical Substances BRCA1 Protein ; BRCA1 protein, human ; BRCA2 Protein ; BRCA2 protein, human ; Multifunctional Enzymes ; DNA (9007-49-2) ; Endonucleases (EC 3.1.-) ; Phosphoric Diester Hydrolases (EC 3.1.4.-) ; TDP1 protein, human (EC 3.1.4.-) ; APEX1 protein, human (EC 4.2.99.18) ; APEX2 protein, human (EC 4.2.99.18) ; DNA-(Apurinic or Apyrimidinic Site) Lyase (EC 4.2.99.18)
    Language English
    Publishing date 2020-06-08
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 1415236-8
    ISSN 1097-4164 ; 1097-2765
    ISSN (online) 1097-4164
    ISSN 1097-2765
    DOI 10.1016/j.molcel.2020.05.021
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

To top