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Book: Special issue on: "Modern plant breeding approaches"

Özkan, Hakan

(Turkish journal of agriculture and forestry ; 39,4)

2015

Title variant	Modern plant breeding approaches
Author's details	[guest ed. Hakan Özkan ...]
Series title	Turkish journal of agriculture and forestry ; 39,4
Collection
Language	English
Size	S. 515 - 600 : Ill., graph. Darst.
Publisher	TÜBITAK
Publishing place	Ankara
Publishing country	Turkey
Document type	Book
HBZ-ID	HT018787666
Database	Catalogue ZB MED Nutrition, Environment, Agriculture

In stock of ZB MED Bonn / Germany

Shelf mark	Loan status	Location
Z 5859 (39,4)	available for loan (reading room)	Freihandmagazin (U1)

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Article ; Online: Utilizing the Potential of Waste Hemp Reinforcement: Investigating Mechanical and Thermal Properties of Polypropylene and Polylactic Acid Biocomposites.

Yılmaz, Anıl / Özkan, Hakan / Genceli Güner, F Elif

ACS omega

2024 Volume 9, Issue 8, Page(s) 8818–8828

Abstract: Hemp has gained significant popularity for its diverse applications; however, this study explores the untapped potential of waste hemp (wH) as a cost-effective and sustainable bioadditive for the development of high-performance biocomposites. wH offers ... ...

Abstract	Hemp has gained significant popularity for its diverse applications; however, this study explores the untapped potential of waste hemp (wH) as a cost-effective and sustainable bioadditive for the development of high-performance biocomposites. wH offers advantages such as low cost, easy availability, and suitability for extrusion. Polypropylene (PP) and poly(lactic acid) (PLA) served as polymer matrices for this investigation. In order to enhance the interaction between the wH and polymer matrices, alkaline and silane pretreatments were applied to the wHs of both matrices. At the same time, the MA-
Language	English
Publishing date	2024-02-14
Publishing country	United States
Document type	Journal Article
ISSN	2470-1343
ISSN (online)	2470-1343
DOI	10.1021/acsomega.3c06240
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Article ; Online: Grain quality traits within the wheat (Triticum spp.) genepool: prospects for improved nutrition through de novo domestication.

Zeibig, Frederike / Kilian, Benjamin / Özkan, Hakan / Pantha, Sumitra / Frei, Michael

Journal of the science of food and agriculture

2024 Volume 104, Issue 7, Page(s) 4400–4410

Abstract: Background: Wild relatives of wheat (Triticum spp.) harbor beneficial alleles for potential improvement and de novo domestication of selected genotypes with advantageous traits. We analyzed the nutrient composition in wild diploid and tetraploid wheats ... ...

Abstract	Background: Wild relatives of wheat (Triticum spp.) harbor beneficial alleles for potential improvement and de novo domestication of selected genotypes with advantageous traits. We analyzed the nutrient composition in wild diploid and tetraploid wheats and their domesticated diploid, tetraploid and hexaploid relatives under field conditions in Germany and compared them with modern Triticum aestivum and Triticum durum cultivars. Grain iron (Fe) and zinc (Zn) concentrations, phytate:mineral molar ratios, grain protein content (GPC) and antioxidant activity were analyzed across 125 genotypes. Results: Grain Fe and Zn concentrations in wild wheats were 72 mg kg Conclusion: Our results indicate alteration of grain quality during domestication. T. araraticum has promising genotypes with advantageous grain quality characteristics that could be selected for de novo domestication. Favorable nutritional traits in the GGAA wheat lineage (T. araraticum and T. zhukovskyi) hold promise for improving grain quality traits. © 2024 The Authors. Journal of The Science of Food and Agriculture published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.
MeSH term(s)	Triticum/chemistry ; Tetraploidy ; Antioxidants/metabolism ; Phytic Acid/metabolism ; Domestication ; Edible Grain/chemistry ; Zinc/metabolism
Chemical Substances	Antioxidants ; Phytic Acid (7IGF0S7R8I) ; Zinc (J41CSQ7QDS)
Language	English
Publishing date	2024-02-06
Publishing country	England
Document type	Journal Article
ZDB-ID	184116-6
ISSN	1097-0010 ; 0022-5142
ISSN (online)	1097-0010
ISSN	0022-5142
DOI	10.1002/jsfa.13328
Database	MEDical Literature Analysis and Retrieval System OnLINE

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bis Jg. 2021: Bestellungen von Artikeln über das Online-Bestellformular
ab Jg. 2022: Lesesaal (EG)

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Article: A new genetic linkage map in einkorn wheat (Triticum monococcum) detects two major QTLs for heading date in chromosome 2A and 5A, probably corresponding to the photoperiod and vernalization genes

Sesiz, Uğur / Özkan, Hakan

Plant breeding. 2022 Feb., v. 141, no. 1

2022

Abstract: Einkorn harbours a wide range of genetic diversity for agronomically important traits. Heading date is one of the important traits for the adaptation of wheat species to various climatic conditions and the cultivation in diverse regions and seasons. In ... ...

Abstract	Einkorn harbours a wide range of genetic diversity for agronomically important traits. Heading date is one of the important traits for the adaptation of wheat species to various climatic conditions and the cultivation in diverse regions and seasons. In this study, DArTseq and SSR marker‐based linkage map of einkorn wheat was constructed using 150 recombinant inbred lines (RILs) derived from a cross between ID1623 and MONLIS. The linkage map involved 865 SNP, 787 Silico‐DArT and 16 SSR DNA markers mapped to 741 loci in seven linkage groups and covered 1158.54 cM with an average density of 1.56 cM/locus. Four QTLs associated with heading date, detected in all environments by composite interval mapping (CIM), were positioned across the 2A, 5A and 7A einkorn wheat chromosomes. Two major and stable QTLs, QThd‐2A.2 and QThd 5A.1, were identified on chromosomes 2A and 5A, respectively. These QTLs probably coincide with photoperiod and vernalization genes in accordance with previously published maps. The new map will facilitate quantitative trait locus mapping, map‐based cloning and comparative genomics in wheat species.
Keywords	DNA ; Triticum monococcum subsp. monococcum ; chromosome mapping ; genetic variation ; genomics ; loci ; quantitative trait loci ; vernalization ; wheat
Language	English
Dates of publication	2022-02
Size	p. 12-25.
Publishing place	John Wiley & Sons, Ltd
Document type	Article
Note	JOURNAL ARTICLE
ZDB-ID	232853-7
ISSN	0179-9541
ISSN	0179-9541
DOI	10.1111/pbr.12985
Database	NAL-Catalogue (AGRICOLA)

In stock of ZB MED Bonn / Germany

Z 426: Show issues

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Article: Experimental and Statistical Study on the Properties of Basic Oxygen Furnace Slag and Ground Granulated Blast Furnace Slag Based Alkali-Activated Mortar.

Özkan, Hakan / Miyan, Nausad / Kabay, Nihat / Omur, Tarik

Materials (Basel, Switzerland)

2023 Volume 16, Issue 6

Abstract: Basic oxygen furnace slag (BOFS) is a waste material generated during the steelmaking process and has the potential to harm both the environment and living organisms when disposed of in a landfill. However, the cementitious properties of BOFS might help ... ...

Abstract	Basic oxygen furnace slag (BOFS) is a waste material generated during the steelmaking process and has the potential to harm both the environment and living organisms when disposed of in a landfill. However, the cementitious properties of BOFS might help in utilizing this waste as an alternative material in alkali-activated systems. Therefore, in this study, BOFS and blast furnace slag were activated with varying dosages of NaOH, and the fresh, physical, mechanical, and microstructural properties were determined along with statistical analysis to reach the optimal mix design. The test results showed that an increase in BOFS content decreased compressive and flexural strengths, whereas it slightly increased the water absorption and permeable pores of the tested mortar samples. On the contrary, the increase in NaOH molarity resulted in a denser microstructure, reduced water absorption and permeable pores, and improved mechanical properties. Statistically significant relationships were obtained through response surface methodology with optimal mix proportions, namely, (i) 24.61% BOFS and 7.74 M and (ii) 20.00% BOFS and 8.90 M, which maximize the BOFS content with lower molarity and improve the mechanical properties with lower water absorption and porosity, respectively. The proposed methodology maximizes the utilization of waste BOFS in alkali-activated systems and may promote environmental and economic benefits.
Language	English
Publishing date	2023-03-15
Publishing country	Switzerland
Document type	Journal Article
ZDB-ID	2487261-1
ISSN	1996-1944
ISSN	1996-1944
DOI	10.3390/ma16062357
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Article ; Online: Genome‐wide association analysis of coleoptile length and interaction with plant height in durum wheat

Sesiz, Uğur / Alsaleh, Ahmad / Bektas, Harun / Topu, Mustafa / Özkan, Hakan

Agronomy Journal. 2024 , v. 116, no. 1 p.1-17

2024

Abstract: Genotypes with longer coleoptiles can be sown in deep soil layers to reach the underground moisture needed for germination in dry areas. Developing new varieties with longer coleoptiles and shorter plant heights would be novel for wheat breeding and ... ...

Abstract	Genotypes with longer coleoptiles can be sown in deep soil layers to reach the underground moisture needed for germination in dry areas. Developing new varieties with longer coleoptiles and shorter plant heights would be novel for wheat breeding and production. In this study, coleoptile lengths of a panel of durum wheat (Triticum turgidum ssp. durum) genotypes were determined, and 14,255 DArTseq (SNP and Silico‐DArT) markers were used to identify coleoptile length‐associated markers by genome‐wide association study (GWAS). A wide genetic variation was accounted for both coleoptile length and plant height. The genetic relationships between coleoptile length and plant height were evaluated using plant height values from five different environments. Two environmentally stable MTAs were identified, one for coleoptile length (QCol.su.4BS) and one for plant height (QPh.su.4BS). These MTAs were located on the short arm of chromosome 4B, with LOD scores up to 12.00 and 17.00, respectively. A relatively high LD (r² = 0.71) was accounted for between QCol.su.4BS and QPh.su.4BS. The LD block intervals of the MTAs overlapped with some genes with roles in plant growth and development. The functions of plausible candidate genes tell us that QCol.su.4BS may be controlling coleoptile length, whereas QPh.su.4BS may be regulating plant height. The combination of the two loci would be desirable. In conclusion, this study sheds light on the genetic control of coleoptile length and its relationship with plant height in durum wheat.
Keywords	Triticum turgidum subsp. durum ; agronomy ; chromosomes ; coleoptiles ; durum wheat ; genetic variation ; genome-wide association study ; germination ; plant growth ; plant height ; soil
Language	English
Dates of publication	2024-01
Size	p. 1-17.
Publishing place	John Wiley & Sons, Ltd
Document type	Article ; Online
Note	JOURNAL ARTICLE
ZDB-ID	410332-4
ISSN	1435-0645 ; 0002-1962
ISSN (online)	1435-0645
ISSN	0002-1962
DOI	10.1002/agj2.21488
Database	NAL-Catalogue (AGRICOLA)

In stock of ZB MED Bonn / Germany

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Article: Next-Generation-Sequencing-Based Simple Sequence Repeat (SSR) Marker Development and Linkage Mapping in Lentil (

Topu, Mustafa / Sesiz, Uğur / Bektaş, Harun / Toklu, Faruk / Özkan, Hakan

Life (Basel, Switzerland)

2023 Volume 13, Issue 7

Abstract: Simple sequence repeats (SSRs) are highly versatile markers in genetic diversity analysis and plant breeding, making them widely applicable. They hold potential in lentil ( ...

Abstract	Simple sequence repeats (SSRs) are highly versatile markers in genetic diversity analysis and plant breeding, making them widely applicable. They hold potential in lentil (
Language	English
Publishing date	2023-07-18
Publishing country	Switzerland
Document type	Journal Article
ZDB-ID	2662250-6
ISSN	2075-1729
ISSN	2075-1729
DOI	10.3390/life13071579
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Article ; Online: Adulthood asthma as a consequence of childhood adversity: a systematic review of epigenetically affected genes.

Saygideger, Yasemin / Özkan, Hakan / Baydar, Oya / Yilmaz, Ozge

Journal of developmental origins of health and disease

2022 Volume 13, Issue 6, Page(s) 674–682

Abstract: There is an accumulating data that shows relation between childhood adversity and vulnerability to chronic diseases as well as epigenetic influences that in turn give rise to these diseases. Asthma is one of the chronic diseases that is influenced from ... ...

Abstract	There is an accumulating data that shows relation between childhood adversity and vulnerability to chronic diseases as well as epigenetic influences that in turn give rise to these diseases. Asthma is one of the chronic diseases that is influenced from genetic regulation of the inflammatory biomolecules and therefore the hypothesis in this research was childhood adversity might have caused epigenetic differentiation in the asthma-related genes in the population who had childhood trauma. To test this hypothesis, the literature was systematically reviewed to extract epigenetically modified gene data of the adults who had childhood adversity, and affected genes were further evaluated for their association with asthma. PRISMA guidelines were adopted and PubMed and Google Scholar were included in the searched databases, to evaluate epigenetic modifications in asthma-related genes of physically, emotionally or sexually abused children. After retrieving a total of 5245 articles, 36 of them were included in the study. Several genes and pathways that may contribute to pathogenesis of asthma development, increased inflammation, or response to asthma treatment were found epigenetically affected by childhood traumas. Childhood adversity, causing epigenetic changes in DNA, may lead to asthma development or influence the course of the disease and therefore should be taken into account for the prolonged health consequences.
MeSH term(s)	Child ; Adult ; Humans ; Adverse Childhood Experiences ; Asthma/genetics ; Epigenesis, Genetic ; Inflammation
Language	English
Publishing date	2022-03-08
Publishing country	England
Document type	Systematic Review ; Journal Article
ZDB-ID	2554780-X
ISSN	2040-1752 ; 2040-1744
ISSN (online)	2040-1752
ISSN	2040-1744
DOI	10.1017/S2040174422000083
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Article ; Online: Application of unilateral rhomboid intercostal and subserratus plane block for analgesia after laparoscopic cholecystectomy: a quasi-experimental study.

Ökmen, Korgün / Gürbüz, Hande / Özkan, Hakan

Korean journal of anesthesiology

2021 Volume 75, Issue 1, Page(s) 79–85

Abstract: Background: Interfascial plane block can be used to treat postoperative pain after laparoscopic surgery. This study aimed to investigate the effect of ultrasound-guided unilateral rhomboid intercostal and subserratus plane (RISS) block after ... ...

Abstract	Background: Interfascial plane block can be used to treat postoperative pain after laparoscopic surgery. This study aimed to investigate the effect of ultrasound-guided unilateral rhomboid intercostal and subserratus plane (RISS) block after laparoscopic cholecystectomy on the amount of analgesic consumption. Methods: Fifty patients who underwent laparoscopic cholecystectomy were included in this quasi-experimental study. Patients fulfilling the inclusion criteria were analyzed in two groups: RISS group (RISS block with 20 ml of 0.25% bupivacaine + intravenous patient-controlled analgesia [IV-PCA] tramadol [n = 25]); and Control group (IV-PCA tramadol [n = 25]). The primary outcome was the total amount of tramadol used over 24 h. Secondary outcomes included side effects, additional analgesic use, and postoperative pain (at rest and during activity) at 2, 6, 12, and 24 h according to numerical rating scale (NRS) scores. Results: Postoperative tramadol consumption at 24 h was significantly lower in the RISS group than in the Control group (P < 0.001). Resting NRS scores at 2 h and 6 h were significantly lower in the RISS group. NRS scores during movement in the RISS group were significantly lower at 2, 6, and 12 h postoperatively. There was no statistically significant difference in the rate of side effects and additional analgesic use between the groups (P > 0.05). Conclusions: Unilateral RISS block was an effective method for pain management after laparoscopic cholecystectomy and can be used as a part of multimodal analgesia.
MeSH term(s)	Analgesia, Patient-Controlled ; Cholecystectomy, Laparoscopic/adverse effects ; Humans ; Nerve Block/methods ; Pain Management ; Prospective Studies ; Ultrasonography, Interventional
Language	English
Publishing date	2021-07-20
Publishing country	Korea (South)
Document type	Journal Article
ZDB-ID	2557340-8
ISSN	2005-7563 ; 2005-7563
ISSN (online)	2005-7563
ISSN	2005-7563
DOI	10.4097/kja.21229
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Article: Erectile dysfunction after surgery for rectal cancer: a prospective study.

Gökçe, Aylin Hande / Özkan, Hakan

Turkish journal of surgery

2019 Volume 35, Issue 4, Page(s) 293–298

Abstract: Objectives: Erectile dysfunction may occur as a complication of surgical treatment of rectal cancer in male patients. We compared the rates of postoperative erectile dysfunction and response to medical treatment after low anterior resection (LAR) and ... ...

Abstract	Objectives: Erectile dysfunction may occur as a complication of surgical treatment of rectal cancer in male patients. We compared the rates of postoperative erectile dysfunction and response to medical treatment after low anterior resection (LAR) and Miles' procedures. Material and methods: Fifty patients who underwent the Miles' procedure or LAR were prospectively assessed. This study includes fifty patients with stages 1 and stage 2 rectal cancer based on clinical and radiologic assessments, who underwent Miles' (25 out of 50 patients underwent the Miles'procedure and ) or LAR (25 patients underwent LAR) procedures were prospectively assessed. The International Index of Erectile Function (IIEF) form was, used in the assessment to assess erectile dysfunction. This questionnaire, was administered preoperatively and 6 months postoperatively. For the patients with IIEF scores ≤ 25 at postoperative 6th months, tadalafil 5 mg is was given for 12 weeks and IIEF is was repeated after then. Results: No significant differences were found in mean IIEF scores preoperatively (p= 0.695). In both groups, IIEF scores were significantly lower postoperatively compared with preoperatively (p= 0.00001, LAR; p= 0.00001, Miles'). Mean postoperative IIEF scores were significantly lower in patients who underwent Miles' compared with the LAR procedures (p= 0.0001). For patients with IIEF scores ≤ 25 at 6 months, tadalafil 5 mg was given for 12 weeks and IIEF scores were better in both groups (p= 0.00001). Conclusion: The erectile dysfunction rate after Miles' procedure was significantly higher than the rate of patients who developed erectile dysfunction after LAR surgery. We tried to emphasize that in after LAR surgery. We should not be concerned only with cancer treatment surgically in rectal tumour patients, but remember that situations affecting their social life, such as postoperative erectile dysfunction, have medical and psychologic importance.
Language	English
Publishing date	2019-12-16
Publishing country	Turkey
Document type	Journal Article
ISSN	2564-6850
ISSN	2564-6850
DOI	10.5578/turkjsurg.4397
Database	MEDical Literature Analysis and Retrieval System OnLINE

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