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  1. Article ; Online: Quantification of Mixed-Linkage β-Glucan (MLG) in Bacteria.

    Marchante, Juan Antonio / Ruiz-Sáez, Lucía / Muñoz, Socorro / Sanjuán, Juan / Pérez-Mendoza, Daniel

    Methods in molecular biology (Clifton, N.J.)

    2024  Volume 2751, Page(s) 133–143

    Abstract: Prokaryotes are known to produce and secrete a broad range of biopolymers with a high functional and structural heterogeneity, often with critical duties in the bacterial physiology and ecology. Among these, exopolysaccharides (EPS) play relevant roles ... ...

    Abstract Prokaryotes are known to produce and secrete a broad range of biopolymers with a high functional and structural heterogeneity, often with critical duties in the bacterial physiology and ecology. Among these, exopolysaccharides (EPS) play relevant roles in the interaction of bacteria with eukaryotic hosts. EPS can help to colonize the host and assist in bacterial survival, making this interaction more robust by facilitating the formation of structured biofilms. In addition, they are often key molecules in the specific recognition mechanisms involved in both beneficial and pathogenic bacteria-host interactions. A novel EPS known as MLG (Mixed-Linkage β-Glucan) was recently discovered in rhizobia, where it participates in bacterial aggregation and biofilm formation and is required for efficient attachment to the roots of their legume host plants. MLG is the first and, so far, the only reported linear Mixed-Linkage β-glucan in bacteria, containing a perfect alternation of β (1 → 3) and β (1 → 4) bonds. A phylogenetic study of MLG biosynthetic genes suggests that far from being exclusive of rhizobia, different soil and plant-associated bacteria likely produce MLG, adding this novel polymer to the plethora of surface polysaccharides that help bacteria thrive in the changing environment and to establish successful interactions with their hosts.In this work, a quantification method for MLG is proposed. It relays on the hydrolysis of MLG by a specific enzyme (lichenase), and the subsequent quantification of the released disaccharide (laminaribiose) by the phenol-sulfuric acid method. The protocol has been set up and optimized for its use in 96-well plates, which makes it suitable for high-throughput screening (HTS) approaches. This method stands out by its fast processing, technical simplicity, and capability to handle multiple samples and biological replicates at a time.
    MeSH term(s) Phylogeny ; Bacteria ; Prokaryotic Cells ; Rhizobium ; Biofilms
    Language English
    Publishing date 2024-01-24
    Publishing country United States
    Document type Journal Article
    ISSN 1940-6029
    ISSN (online) 1940-6029
    DOI 10.1007/978-1-0716-3617-6_9
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Microbials for Agriculture: Why Do They Call Them Biostimulants When They Mean Probiotics?

    Sanjuán, Juan / Nápoles, Maria Caridad / Pérez-Mendoza, Daniel / Lorite, María J / Rodríguez-Navarro, Dulce N

    Microorganisms

    2023  Volume 11, Issue 1

    Abstract: There is growing interest in using plant-beneficial microorganisms to partially replace chemicals and help reduce the environmental impact of agriculture. Formulated microbial products or inoculants for agriculture contain single strains or a consortium ... ...

    Abstract There is growing interest in using plant-beneficial microorganisms to partially replace chemicals and help reduce the environmental impact of agriculture. Formulated microbial products or inoculants for agriculture contain single strains or a consortium of live microbes, well characterized and biosafe, which can contribute to the growth, health, and development of a plant host. This concept conforms to the definition of probiotics. However, some plant-growth-promoting microorganisms (PGPMs) have been considered a category of biostimulants since some years ago, despite the traditional concept of biostimulants involves substances or materials with no fertilizer value, which in minute amounts promote plant growth. The inclusion of PGPMs together with substances has also involved a significant distortion of the classical concept of biostimulants. Regulations such as the recent EU Fertilizing Products Regulation (EU No. 2019/1009) have incorporated the new definition of biostimulants and included microbials as a subcategory of biostimulants. We discuss that this regulation and the forthcoming European harmonized standards disregard some key features of microbial products, such as the live, true biological nature of their active principles. The factors that determine the complex functional compatibility of plant-microbe associations, and important biosafety issues that concern the intentional release of microbes into the environment, seem to be also ignored. We anticipate that by equating microbials to chemicals, the biological nature of microbial products and their specific requirements will be underestimated, with pernicious consequences for their future development and success.
    Language English
    Publishing date 2023-01-06
    Publishing country Switzerland
    Document type Journal Article ; Review
    ZDB-ID 2720891-6
    ISSN 2076-2607
    ISSN 2076-2607
    DOI 10.3390/microorganisms11010153
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Exploiting the commons: cyclic diguanylate regulation of bacterial exopolysaccharide production.

    Pérez-Mendoza, Daniel / Sanjuán, Juan

    Current opinion in microbiology

    2016  Volume 30, Page(s) 36–43

    Abstract: Nowadays, there is increasing interest for bacterial polysaccharides in a wide variety of industrial sectors. This is due to their chemical and reological properties, and also the possibility to be obtained by fermentation processes. Biosynthesis of a ... ...

    Abstract Nowadays, there is increasing interest for bacterial polysaccharides in a wide variety of industrial sectors. This is due to their chemical and reological properties, and also the possibility to be obtained by fermentation processes. Biosynthesis of a growing number of exopolysaccharides (EPS) has been reported to be regulated by the ubiquitous second messenger c-di-GMP in a limited number of bacterial species. Since most bacteria are yet unexplored, it is likely that an unsuspected number and variety of EPS structures activated by c-di-GMP await to be uncovered. In the search of new EPS, manipulation of bacterial c-di-GMP metabolism can be combined with high throughput approaches for screening of large collections of bacteria. In addition, c-di-GMP activation of EPS production and promotion of cell aggregation may have direct applications in environmental industries related with biofuel production or wastewater treatments.
    MeSH term(s) Bacteria/genetics ; Bacteria/metabolism ; Bacterial Proteins/genetics ; Bacterial Proteins/metabolism ; Cyclic GMP/analogs & derivatives ; Cyclic GMP/metabolism ; Gene Expression Regulation, Bacterial ; Polysaccharides, Bacterial/biosynthesis
    Chemical Substances Bacterial Proteins ; Polysaccharides, Bacterial ; bis(3',5')-cyclic diguanylic acid (61093-23-0) ; Cyclic GMP (H2D2X058MU)
    Language English
    Publishing date 2016-04
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Review
    ZDB-ID 1418474-6
    ISSN 1879-0364 ; 1369-5274
    ISSN (online) 1879-0364
    ISSN 1369-5274
    DOI 10.1016/j.mib.2015.12.004
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Effects of Halophyte Root Exudates and Their Components on Chemotaxis, Biofilm Formation and Colonization of the Halophilic Bacterium Halomonas Anticariensis FP35T

    Sampedro, Inmaculada / Pérez-Mendoza, Daniel / Toral, Laura / Palacios, Esther / Arriagada, César / Llamas, Inmaculada

    Microorganisms. 2020 Apr. 16, v. 8, no. 4

    2020  

    Abstract: Increase in soil salinity poses an enormous problem for agriculture and highlights the need for sustainable crop production solutions. Plant growth-promoting bacteria can be used to boost the growth of halophytes in saline soils. Salicornia is considered ...

    Abstract Increase in soil salinity poses an enormous problem for agriculture and highlights the need for sustainable crop production solutions. Plant growth-promoting bacteria can be used to boost the growth of halophytes in saline soils. Salicornia is considered to be a promising salt-accumulating halophyte for capturing large amounts of carbon from the atmosphere. In addition, colonization and chemotaxis could play an important role in Salicornia-microbe interactions. In this study, the role of chemotaxis in the colonization of the halophilic siredophore-producing bacteria, Halomonas anticariensis FP35ᵀ, on Salicornia hispanica plants was investigated. The chemotactic response of FP35ᵀ to Salicornia root exudates showed optimum dependence at a salt concentration of 5 % NaCl (w/v). Oleanolic acid, the predominant compound in the exudates detected by HPLC and identified by UPLC-HRMS Q-TOF, acts as a chemoattractant. In vitro experiments demonstrated the enhanced positive effects of wild-type H. anticariensis strain FP35ᵀ on root length, shoot length, germination and the vigour index of S. hispanica. Furthermore, these positive effects partially depend on an active chemotaxis system, as the chemotaxis mutant H. anticariensis FP35 ΔcheA showed reduced plant growth promotion for all the parameters tested. Overall, our results suggest that chemotaxis responses to root exudates play an important role in interactions between Salicornia and halophilic bacteria, enhance their colonization and boost plant growth promotion. Preliminary results also indicate that root exudates have a positive impact on H. anticariensis FP35ᵀ biofilm formation under saline conditions, an effect which totally depends on the presence of the cheA gene.
    Keywords Halomonas anticariensis ; Salicornia ; biofilm ; carbon ; chemoattractants ; chemotaxis ; genes ; germination ; growth promotion ; halophytes ; mutants ; oleanolic acid ; plant growth ; salt concentration ; soil salinity ; sustainable agriculture ; vigor
    Language English
    Dates of publication 2020-0416
    Publishing place Multidisciplinary Digital Publishing Institute
    Document type Article
    ZDB-ID 2720891-6
    ISSN 2076-2607
    ISSN 2076-2607
    DOI 10.3390/microorganisms8040575
    Database NAL-Catalogue (AGRICOLA)

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  5. Article: The Role of Two Linear β-Glucans Activated by c-di-GMP in

    Pérez-Mendoza, Daniel / Romero-Jiménez, Lorena / Rodríguez-Carvajal, Miguel Ángel / Lorite, María J / Muñoz, Socorro / Olmedilla, Adela / Sanjuán, Juan

    Biology

    2022  Volume 11, Issue 9

    Abstract: Bacterial exopolysaccharides (EPS) have been implicated in a variety of functions that assist in bacterial survival, colonization, and host-microbe interactions. Among them, bacterial linear β-glucans are polysaccharides formed by D-glucose units linked ... ...

    Abstract Bacterial exopolysaccharides (EPS) have been implicated in a variety of functions that assist in bacterial survival, colonization, and host-microbe interactions. Among them, bacterial linear β-glucans are polysaccharides formed by D-glucose units linked by β-glycosidic bonds, which include curdlan, cellulose, and the new described Mixed Linkage β-Glucan (MLG). Bis-(3',5')-cyclic dimeric guanosine monophosphate (c-di-GMP) is a universal bacterial second messenger that usually promote EPS production. Here, we report
    Language English
    Publishing date 2022-09-17
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2661517-4
    ISSN 2079-7737
    ISSN 2079-7737
    DOI 10.3390/biology11091364
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article: The Role of Two Linear β-Glucans Activated by c-di-GMP in Rhizobium etli CFN42

    Pérez-Mendoza, Daniel / Romero-Jiménez, Lorena / Rodríguez-Carvajal, Miguel Ángel / Lorite, María J. / Muñoz, Socorro / Olmedilla, Adela / Sanjuán, Juan

    Biology. 2022 Sept. 17, v. 11, no. 9

    2022  

    Abstract: Bacterial exopolysaccharides (EPS) have been implicated in a variety of functions that assist in bacterial survival, colonization, and host–microbe interactions. Among them, bacterial linear β-glucans are polysaccharides formed by D-glucose units linked ... ...

    Abstract Bacterial exopolysaccharides (EPS) have been implicated in a variety of functions that assist in bacterial survival, colonization, and host–microbe interactions. Among them, bacterial linear β-glucans are polysaccharides formed by D-glucose units linked by β-glycosidic bonds, which include curdlan, cellulose, and the new described Mixed Linkage β-Glucan (MLG). Bis-(3′,5′)-cyclic dimeric guanosine monophosphate (c-di-GMP) is a universal bacterial second messenger that usually promote EPS production. Here, we report Rhizobium etli as the first bacterium capable of producing cellulose and MLG. Significant amounts of these two β-glucans are not produced under free-living laboratory conditions, but their production is triggered upon elevation of intracellular c-di-GMP levels, both contributing to Congo red (CR⁺) and Calcofluor (CF⁺) phenotypes. Cellulose turned out to be more relevant for free-living phenotypes promoting flocculation and biofilm formation under high c-di-GMP conditions. None of these two EPS are essential for attachment to roots of Phaseolus vulgaris, neither for nodulation nor for symbiotic nitrogen fixation. However, both β-glucans separately contribute to the fitness of interaction between R. etli and its host. Overproduction of these β-glucans, particularly cellulose, appears detrimental for symbiosis. This indicates that their activation by c-di-GMP must be strictly regulated in time and space and should be controlled by different, yet unknown, regulatory pathways.
    Keywords Phaseolus vulgaris ; Rhizobium etli ; bacteria ; biofilm ; cellulose ; curdlan ; cyclic GMP ; exopolysaccharides ; flocculation ; glucose ; guanosine monophosphate ; nitrogen fixation ; nodulation ; second messengers ; symbiosis
    Language English
    Dates of publication 2022-0917
    Publishing place Multidisciplinary Digital Publishing Institute
    Document type Article
    ZDB-ID 2661517-4
    ISSN 2079-7737
    ISSN 2079-7737
    DOI 10.3390/biology11091364
    Database NAL-Catalogue (AGRICOLA)

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  7. Article ; Online: Impact of c-di-GMP on the Extracellular Proteome of Rhizobium etli

    Lorite, María J. / Casas-Román, Ariana / Girard, Lourdes / Encarnación, Sergio / Díaz-Garrido, Natalia / Badía, Josefa / Baldomá, Laura / Pérez-Mendoza, Daniel / Sanjuán, Juan

    Biology (Basel). 2022 Dec. 26, v. 12, no. 1

    2022  

    Abstract: Extracellular matrix components of bacterial biofilms include biopolymers such as polysaccharides, nucleic acids and proteins. Similar to polysaccharides, the secretion of adhesins and other matrix proteins can be regulated by the second messenger cyclic ...

    Abstract Extracellular matrix components of bacterial biofilms include biopolymers such as polysaccharides, nucleic acids and proteins. Similar to polysaccharides, the secretion of adhesins and other matrix proteins can be regulated by the second messenger cyclic diguanylate (cdG). We have performed quantitative proteomics to determine the extracellular protein contents of a Rhizobium etli strain expressing high cdG intracellular levels. cdG promoted the exportation of proteins that likely participate in adhesion and biofilm formation: the rhizobial adhesion protein RapA and two previously undescribed likely adhesins, along with flagellins. Unexpectedly, cdG also promoted the selective exportation of cytoplasmic proteins. Nearly 50% of these cytoplasmic proteins have been previously described as moonlighting or candidate moonlighting proteins in other organisms, often found extracellularly. Western blot assays confirmed cdG-promoted export of two of these cytoplasmic proteins, the translation elongation factor (EF-Tu) and glyceraldehyde 3-phosphate dehydrogenase (Gap). Transmission Electron Microscopy immunolabeling located the Gap protein in the cytoplasm but was also associated with cell membranes and extracellularly, indicative of an active process of exportation that would be enhanced by cdG. We also obtained evidence that cdG increases the number of extracellular Gap proteoforms, suggesting a link between cdG, the post-translational modification and the export of cytoplasmic proteins.
    Keywords GTPase-activating proteins ; Rhizobium etli ; Western blotting ; adhesins ; adhesion ; biofilm ; biopolymers ; cyclic GMP ; cytoplasm ; exports ; extracellular matrix ; flagellin ; glyceraldehyde-3-phosphate dehydrogenase ; peptide elongation factors ; polysaccharides ; post-translational modification ; proteome ; proteomics ; secretion ; transmission electron microscopy
    Language English
    Dates of publication 2022-1226
    Publishing place Multidisciplinary Digital Publishing Institute
    Document type Article ; Online
    ZDB-ID 2661517-4
    ISSN 2079-7737
    ISSN 2079-7737
    DOI 10.3390/biology12010044
    Database NAL-Catalogue (AGRICOLA)

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  8. Article: Effects of Halophyte Root Exudates and Their Components on Chemotaxis, Biofilm Formation and Colonization of the Halophilic Bacterium

    Sampedro, Inmaculada / Pérez-Mendoza, Daniel / Toral, Laura / Palacios, Esther / Arriagada, César / Llamas, Inmaculada

    Microorganisms

    2020  Volume 8, Issue 4

    Abstract: Increase in soil salinity poses an enormous problem for agriculture and highlights the need for sustainable crop production solutions. Plant growth-promoting bacteria can be used to boost the growth of halophytes in saline soils. ...

    Abstract Increase in soil salinity poses an enormous problem for agriculture and highlights the need for sustainable crop production solutions. Plant growth-promoting bacteria can be used to boost the growth of halophytes in saline soils.
    Language English
    Publishing date 2020-04-16
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2720891-6
    ISSN 2076-2607
    ISSN 2076-2607
    DOI 10.3390/microorganisms8040575
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article: Exploiting the commons: cyclic diguanylate regulation of bacterial exopolysaccharide production

    Pérez-Mendoza, Daniel / Juan Sanjuán

    Current opinion in microbiology. 2016 Apr., v. 30

    2016  

    Abstract: Nowadays, there is increasing interest for bacterial polysaccharides in a wide variety of industrial sectors. This is due to their chemical and reological properties, and also the possibility to be obtained by fermentation processes. Biosynthesis of a ... ...

    Abstract Nowadays, there is increasing interest for bacterial polysaccharides in a wide variety of industrial sectors. This is due to their chemical and reological properties, and also the possibility to be obtained by fermentation processes. Biosynthesis of a growing number of exopolysaccharides (EPS) has been reported to be regulated by the ubiquitous second messenger c-di-GMP in a limited number of bacterial species. Since most bacteria are yet unexplored, it is likely that an unsuspected number and variety of EPS structures activated by c-di-GMP await to be uncovered. In the search of new EPS, manipulation of bacterial c-di-GMP metabolism can be combined with high throughput approaches for screening of large collections of bacteria. In addition, c-di-GMP activation of EPS production and promotion of cell aggregation may have direct applications in environmental industries related with biofuel production or wastewater treatments.
    Keywords bacteria ; biosynthesis ; exopolysaccharides ; fermentation ; fuel production ; screening ; wastewater treatment
    Language English
    Dates of publication 2016-04
    Size p. 36-43.
    Publishing place Elsevier Ltd
    Document type Article
    ZDB-ID 1418474-6
    ISSN 1879-0364 ; 1369-5274
    ISSN (online) 1879-0364
    ISSN 1369-5274
    DOI 10.1016/j.mib.2015.12.004
    Database NAL-Catalogue (AGRICOLA)

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  10. Article: AmrZ and FleQ Co-regulate Cellulose Production in

    Pérez-Mendoza, Daniel / Felipe, Antonia / Ferreiro, María Dolores / Sanjuán, Juan / Gallegos, María Trinidad

    Frontiers in microbiology

    2019  Volume 10, Page(s) 746

    Abstract: Pseudomonas ... ...

    Abstract Pseudomonas syringae
    Language English
    Publishing date 2019-04-17
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2587354-4
    ISSN 1664-302X
    ISSN 1664-302X
    DOI 10.3389/fmicb.2019.00746
    Database MEDical Literature Analysis and Retrieval System OnLINE

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