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  1. Article ; Online: Comparative study between virus neutralisation testing and other serological methods detecting anti-SARS-CoV-2 antibodies in Europe, 2021.

    Mögling, Ramona / Reimerink, Johan / Stanoeva, Kamelia R / Keramarou, Maria / Guiomar, Raquel / Costa, Inês / Haveri, Anu / Holzer, Barbara / Korukluoğlu, Gülay / Nguyen, Trung / Pakarna, Gatis / Pancer, Katarzyna / Trilar, Katarina Prosenc / Protic, Jelena / Stojanović, Marijana / De Santis, Riccardo / Lista, Florigio / Vremera, Teodora / Leustean, Mihaela /
    Pistol, Adriana / Zelena, Hana / Reusken, Chantal / Broberg, Eeva K

    Journal of virological methods

    2023  Volume 322, Page(s) 114825

    Abstract: One consequence of the ongoing coronavirus disease pandemic was the rapid development of both in-house and commercial serological assays detecting anti-SARS-CoV-2 antibodies, in an effort to reliably detect acute and past SARS-CoV-2 infections. It is ... ...

    Abstract One consequence of the ongoing coronavirus disease pandemic was the rapid development of both in-house and commercial serological assays detecting anti-SARS-CoV-2 antibodies, in an effort to reliably detect acute and past SARS-CoV-2 infections. It is crucial to evaluate the quality of these serological tests and consequently the sero-epidemiological studies that are performed with the respective tests. Here, we describe the set-up and results of a comparative study, in which a laboratory contracted by the European Centre for Disease Prevention and Control offered a centralised service to EU/EEA Member and pre-accession Member States to test representative serum specimens with known serological results, with the gold standard technique (virus neutralisation tests) to determine the presence of neutralising antibodies. Laboratories from 12 European countries shared 719 serum specimens with the contractor laboratory. We found that in-house serological tests detecting neutralising antibodies showed the highest percent agreement, both positive and negative, with the virus neutralisation test results. Despite extensive differences in virus neutralisation protocols neutralisation titres showed a strong correlation. From the commercial assays, the best positive percent agreement was found for SARS-CoV-2 IgG (sCOVG) (Siemens - Atellica IM Analyzer). Despite lower positive percent agreement of LIAISON SARS-CoV-2 TrimericS IgG kit (Diasorin Inc.), the obtained results showed relatively good correlation with neutralisation titres. The set-up of this study allowed for high comparability between laboratories and enabled laboratories that do not have the capacity or capability to perform VNTs themselves. Given the variety of in-house protocols detecting SARS-CoV-2 specific neutralising antibodies, including the virus strain, it could be of interest to select reference isolates for SARS-CoV-2 diagnostic to be made available for interested EU Member States and pre-accession countries.
    MeSH term(s) Humans ; COVID-19/diagnosis ; SARS-CoV-2 ; COVID-19 Testing ; Clinical Laboratory Techniques/methods ; Antibodies, Viral ; Europe ; Immunoglobulin G ; Antibodies, Neutralizing
    Chemical Substances Antibodies, Viral ; Immunoglobulin G ; Antibodies, Neutralizing
    Language English
    Publishing date 2023-09-29
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 8013-5
    ISSN 1879-0984 ; 0166-0934
    ISSN (online) 1879-0984
    ISSN 0166-0934
    DOI 10.1016/j.jviromet.2023.114825
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: New perspectives on respiratory syncytial virus surveillance at the national level: lessons from the COVID-19 pandemic.

    Teirlinck, Anne C / Johannesen, Caroline K / Broberg, Eeva K / Penttinen, Pasi / Campbell, Harry / Nair, Harish / Reeves, Rachel M / Bøås, Håkon / Brytting, Mia / Cai, Wei / Carnahan, AnnaSara / Casalegno, Jean-Sebastien / Danis, Kostas / De Gascun, Cillian / Ellis, Joanna / Emborg, Hanne-Dorthe / Gijon, Manuel / Guiomar, Raquel / Hirve, Siddhivinayak S /
    Jiřincová, Helena / Nohynek, Hanna / Oliva, Jesus Angel / Osei-Yeboah, Richard / Paget, John / Pakarna, Gatis / Pebody, Richard / Presser, Lance / Rapp, Marie / Reiche, Janine / Rodrigues, Ana Paula / Seppälä, Elina / Socan, Maja / Szymanski, Karol / Trebbien, Ramona / Večeřová, Jaromíra / van der Werf, Sylvie / Zambon, Maria / Meijer, Adam / Fischer, Thea K

    The European respiratory journal

    2023  Volume 61, Issue 4

    MeSH term(s) Humans ; Pandemics ; COVID-19/epidemiology ; Respiratory Syncytial Virus, Human ; Respiratory Syncytial Virus Infections/epidemiology ; Respiratory Tract Infections/epidemiology
    Language English
    Publishing date 2023-04-03
    Publishing country England
    Document type Editorial ; Research Support, Non-U.S. Gov't
    ZDB-ID 639359-7
    ISSN 1399-3003 ; 0903-1936
    ISSN (online) 1399-3003
    ISSN 0903-1936
    DOI 10.1183/13993003.01569-2022
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Recommendations for respiratory syncytial virus surveillance at the national level.

    Teirlinck, Anne C / Broberg, Eeva K / Stuwitz Berg, Are / Campbell, Harry / Reeves, Rachel M / Carnahan, AnnaSara / Lina, Bruno / Pakarna, Gatis / Bøås, Håkon / Nohynek, Hanna / Emborg, Hanne-Dorthe / Nair, Harish / Reiche, Janine / Oliva, Jesus Angel / O'Gorman, Joanne / Paget, John / Szymanski, Karol / Danis, Kostas / Socan, Maja /
    Gijon, Manuel / Rapp, Marie / Havlíčková, Martina / Trebbien, Ramona / Guiomar, Raquel / Hirve, Siddhivinayak S / Buda, Silke / van der Werf, Sylvie / Meijer, Adam / Fischer, Thea K

    The European respiratory journal

    2021  Volume 58, Issue 3

    Abstract: Respiratory syncytial virus (RSV) is a common cause of acute lower respiratory tract infections and hospitalisations among young children and is globally responsible for many deaths in young children, especially in infants aged <6 months. Furthermore, ... ...

    Abstract Respiratory syncytial virus (RSV) is a common cause of acute lower respiratory tract infections and hospitalisations among young children and is globally responsible for many deaths in young children, especially in infants aged <6 months. Furthermore, RSV is a common cause of severe respiratory disease and hospitalisation among older adults. The development of new candidate vaccines and monoclonal antibodies highlights the need for reliable surveillance of RSV. In the European Union (EU), no up-to-date general recommendations on RSV surveillance are currently available. Based on outcomes of a workshop with 29 European experts in the field of RSV virology, epidemiology and public health, we provide recommendations for developing a feasible and sustainable national surveillance strategy for RSV that will enable harmonisation and data comparison at the European level. We discuss three surveillance components: active sentinel community surveillance, active sentinel hospital surveillance and passive laboratory surveillance, using the EU acute respiratory infection and World Health Organization (WHO) extended severe acute respiratory infection case definitions. Furthermore, we recommend the use of quantitative reverse transcriptase PCR-based assays as the standard detection method for RSV and virus genetic characterisation, if possible, to monitor genetic evolution. These guidelines provide a basis for good quality, feasible and affordable surveillance of RSV. Harmonisation of surveillance standards at the European and global level will contribute to the wider availability of national level RSV surveillance data for regional and global analysis, and for estimation of RSV burden and the impact of future immunisation programmes.
    MeSH term(s) Aged ; Child ; Child, Preschool ; Hospitalization ; Humans ; Infant ; Respiratory Syncytial Virus Infections/diagnosis ; Respiratory Syncytial Virus Infections/epidemiology ; Respiratory Syncytial Virus Infections/prevention & control ; Respiratory Syncytial Virus, Human ; Respiratory Tract Infections/diagnosis ; Respiratory Tract Infections/epidemiology ; Sentinel Surveillance
    Language English
    Publishing date 2021-10-01
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 639359-7
    ISSN 1399-3003 ; 0903-1936
    ISSN (online) 1399-3003
    ISSN 0903-1936
    DOI 10.1183/13993003.03766-2020
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: WGS analysis and molecular resistance mechanisms of azithromycin-resistant (MIC >2 mg/L) Neisseria gonorrhoeae isolates in Europe from 2009 to 2014.

    Jacobsson, Susanne / Golparian, Daniel / Cole, Michelle / Spiteri, Gianfranco / Martin, Irene / Bergheim, Thea / Borrego, Maria José / Crowley, Brendan / Crucitti, Tania / Van Dam, Alje P / Hoffmann, Steen / Jeverica, Samo / Kohl, Peter / Mlynarczyk-Bonikowska, Beata / Pakarna, Gatis / Stary, Angelika / Stefanelli, Paola / Pavlik, Peter / Tzelepi, Eva /
    Abad, Raquel / Harris, Simon R / Unemo, Magnus

    The Journal of antimicrobial chemotherapy

    2016  Volume 71, Issue 11, Page(s) 3109–3116

    Abstract: Objectives: To elucidate the genome-based epidemiology and phylogenomics of azithromycin-resistant (MIC >2 mg/L) Neisseria gonorrhoeae strains collected in 2009-14 in Europe and clarify the azithromycin resistance mechanisms.: Methods: Seventy-five ... ...

    Abstract Objectives: To elucidate the genome-based epidemiology and phylogenomics of azithromycin-resistant (MIC >2 mg/L) Neisseria gonorrhoeae strains collected in 2009-14 in Europe and clarify the azithromycin resistance mechanisms.
    Methods: Seventy-five azithromycin-resistant (MIC 4 to >256 mg/L) N. gonorrhoeae isolates collected in 17 European countries during 2009-14 were examined using antimicrobial susceptibility testing and WGS.
    Results: Thirty-six N. gonorrhoeae multi-antigen sequence typing STs and five phylogenomic clades, including 4-22 isolates from several countries per clade, were identified. The azithromycin target mutation A2059G (Escherichia coli numbering) was found in all four alleles of the 23S rRNA gene in all isolates with high-level azithromycin resistance (n = 4; MIC ≥256 mg/L). The C2611T mutation was identified in two to four alleles of the 23S rRNA gene in the remaining 71 isolates. Mutations in mtrR and its promoter were identified in 43 isolates, comprising isolates within the whole azithromycin MIC range. No mutations associated with azithromycin resistance were found in the rplD gene or the rplV gene and none of the macrolide resistance-associated genes [mef(A/E), ere(A), ere(B), erm(A), erm(B), erm(C) and erm(F)] were identified in any isolate.
    Conclusions: Clonal spread of relatively few N. gonorrhoeae strains accounts for the majority of the azithromycin resistance (MIC >2 mg/L) in Europe. The four isolates with high-level resistance to azithromycin (MIC ≥256 mg/L) were widely separated in the phylogenomic tree and did not belong to any of the main clades. The main azithromycin resistance mechanisms were the A2059G mutation (high-level resistance) and the C2611T mutation (low- and moderate-level resistance) in the 23S rRNA gene.
    MeSH term(s) Adolescent ; Adult ; Aged ; Anti-Bacterial Agents/pharmacology ; Azithromycin/pharmacology ; Cluster Analysis ; DNA, Bacterial/chemistry ; DNA, Bacterial/genetics ; DNA, Ribosomal/chemistry ; DNA, Ribosomal/genetics ; Drug Resistance, Bacterial ; Europe/epidemiology ; Female ; Genes, Bacterial ; Genome, Bacterial ; Genotype ; Gonorrhea/epidemiology ; Gonorrhea/microbiology ; Humans ; Male ; Microbial Sensitivity Tests ; Middle Aged ; Molecular Epidemiology ; Neisseria gonorrhoeae/classification ; Neisseria gonorrhoeae/drug effects ; Neisseria gonorrhoeae/genetics ; Neisseria gonorrhoeae/isolation & purification ; Phylogeny ; RNA, Ribosomal, 23S/genetics ; Sequence Analysis, DNA ; Young Adult
    Chemical Substances Anti-Bacterial Agents ; DNA, Bacterial ; DNA, Ribosomal ; RNA, Ribosomal, 23S ; Azithromycin (83905-01-5)
    Language English
    Publishing date 2016-11
    Publishing country England
    Document type Journal Article
    ZDB-ID 191709-2
    ISSN 1460-2091 ; 0305-7453
    ISSN (online) 1460-2091
    ISSN 0305-7453
    DOI 10.1093/jac/dkw279
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Ten years of external quality assessment (EQA) of Neisseria gonorrhoeae antimicrobial susceptibility testing in Europe elucidate high reliability of data.

    Cole, Michelle J / Quaye, Nerteley / Jacobsson, Susanne / Day, Michaela / Fagan, Elizabeth / Ison, Catherine / Pitt, Rachel / Seaton, Shila / Woodford, Neil / Stary, Angelika / Pleininger, Sonja / Crucitti, Tania / Hunjak, Blaženka / Maikanti, Panayiota / Hoffmann, Steen / Viktorova, Jelena / Buder, Susanne / Kohl, Peter / Tzelepi, Eva /
    Siatravani, Eirini / Balla, Eszter / Hauksdóttir, Guðrún Svanborg / Rose, Lisa / Stefanelli, Paola / Carannante, Anna / Pakarna, Gatis / Mifsud, Francesca / Cassar, Rosann Zammit / Linde, Ineke / Bergheim, Thea / Steinbakk, Martin / Mlynarczyk-Bonikowska, Beata / Borrego, Maria-José / Shepherd, Jill / Pavlik, Peter / Jeverica, Samo / Vazquez, Julio / Abad, Raquel / Weiss, Sabrina / Spiteri, Gianfranco / Unemo, Magnus

    BMC infectious diseases

    2019  Volume 19, Issue 1, Page(s) 281

    Abstract: Background: Confidence in any diagnostic and antimicrobial susceptibility testing data is provided by appropriate and regular quality assurance (QA) procedures. In Europe, the European Gonococcal Antimicrobial Susceptibility Programme (Euro-GASP) has ... ...

    Abstract Background: Confidence in any diagnostic and antimicrobial susceptibility testing data is provided by appropriate and regular quality assurance (QA) procedures. In Europe, the European Gonococcal Antimicrobial Susceptibility Programme (Euro-GASP) has been monitoring the antimicrobial susceptibility in Neisseria gonorrhoeae since 2004. Euro-GASP includes an external quality assessment (EQA) scheme as an essential component for a quality-assured laboratory-based surveillance programme. Participation in the EQA scheme enables any problems with the performed antimicrobial susceptibility testing to be identified and addressed, feeds into the curricula of laboratory training organised by the Euro-GASP network, and assesses the capacity of individual laboratories to detect emerging new, rare and increasing antimicrobial resistance phenotypes. Participant performance in the Euro-GASP EQA scheme over a 10 year period (2007 to 2016, no EQA in 2013) was evaluated.
    Methods: Antimicrobial susceptibility category and MIC results from the first 5 years (2007-2011) of the Euro-GASP EQA were compared with the latter 5 years (2012-2016). These time periods were selected to assess the impact of the 2012 European Union case definitions for the reporting of antimicrobial susceptibility.
    Results: Antimicrobial susceptibility category agreement in each year was ≥91%. Discrepancies in susceptibility categories were generally because the MICs for EQA panel isolates were on or very close to the susceptibility or resistance breakpoints. A high proportion of isolates tested over the 10 years were within one (≥90%) or two (≥97%) MIC log
    Conclusions: The high level of comparability of results in this EQA scheme indicates that high quality data are produced by the Euro-GASP participants and gives confidence in susceptibility and resistance data generated by laboratories performing decentralised testing.
    MeSH term(s) Anti-Bacterial Agents/pharmacology ; Disk Diffusion Antimicrobial Tests/standards ; Drug Resistance, Bacterial ; Europe ; Laboratories ; Microbial Sensitivity Tests/standards ; Neisseria gonorrhoeae/drug effects ; Quality Control ; Reproducibility of Results
    Chemical Substances Anti-Bacterial Agents
    Language English
    Publishing date 2019-03-25
    Publishing country England
    Document type Journal Article
    ISSN 1471-2334
    ISSN (online) 1471-2334
    DOI 10.1186/s12879-019-3900-z
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article: Predominance of influenza virus A(H3N2) 3C.2a1b and A(H1N1)pdm09 6B.1A5A genetic subclades in the WHO European Region, 2018–2019

    Melidou, Angeliki / Hungnes, Olav / Pereyaslov, Dmitriy / Adlhoch, Cornelia / Segaloff, Hannah / Robesyn, Emmanuel / Penttinen, Pasi / Olsen, Sonja J / Redlberger-Fritz, Monika / Popow-Kraupp, Therese / Hasibra, Iris / Simaku, Artan / Thomas, Isabelle / Barbezange, Cyril / Dedeić-Ljubović, Amela / Rodić-Vukmir, Nina / Korsun, Neli / Angenova, Svetla / Draženović, Vladimir /
    Koliou, Maria / Pieridou, Despo / Havlickova, Martina / Nagy, Alexander / Trebbien, Ramona / Galiano, Monica / Thompson, Catherine / Ikonen, Niina / Haveri, Anu / Behillil, Sylvie / Enouf, Vincent / Valette, Martine / Lina, Bruno / Gavashelidze, Mari / Machablishvili, Ann / Gioula, Georgia / Exindari, Maria / Kossyvakis, Athanasios / Mentis, Andreas / Dürrwald, Ralf / Zsuzsanna, Molnar / Monika, Rozsa / Löve, Arthur / Erna, Gudrun / Dunford, Linda / Fitzpatrick, Sarah / Castrucci, Maria Rita / Puzelli, Simona / Sagymbay, Altynay / Nussupbayeva, Gaukhar / Zamjatina, Natalija / Pakarna, Gatis / Griskevičius, Algirdas / Skrickiene, Asta / Fournier, Guillaume / Mossong, Joel / Melillo, Jackie / Zahra, Graziella / Meijer, Adam / Fouchier, Ron / McCaughey, Conall / O'Doherty, Mark / Bragstad, Karoline / Guiomar, Raquel / Pechirra, Pedro / Apostol, Mariana / Alina, Druc / Lazar, Mihaela / Maria, Cherciu Carmen / Komissarov, Andrey / Burtseva, Elena / Gunson, Rory N / Shepherd, Samantha / Tichá, Elena / Staronova, Edita / Prosenc, Katarina / Berginc, Nataša / Pozo, Francisco / Casas, Inmaculada / Brytting, Mia / Wiman, Åsa / Gonçalves, Ana Rita / Demchyshyna, Iryna / Mironenko, Alla / Moore, Catherine / Cottrell, Simon

    Vaccine. 2020 July 31, v. 38, no. 35

    2020  

    Abstract: The 2018/2019 influenza season in the WHO European Region was dominated by influenza A (H1N1)pdm09 and (H3N2) viruses, with very few influenza B viruses detected.Countries in the European Region reported virus characterization data to The European ... ...

    Institution European Region influenza surveillance network
    Abstract The 2018/2019 influenza season in the WHO European Region was dominated by influenza A (H1N1)pdm09 and (H3N2) viruses, with very few influenza B viruses detected.Countries in the European Region reported virus characterization data to The European Surveillance System for weeks 40/2018 to 20/2019. These virus antigenic and genetic characterization and haemagglutinin (HA) sequence data were analysed to describe and assess circulating viruses relative to the 2018/2019 vaccine virus components for the northern hemisphere.Thirty countries reported 4776 viruses characterized genetically and 3311 viruses antigenically. All genetically characterized A(H1N1)pdm09 viruses fell in subclade 6B.1A, of which 90% carried the amino acid substitution S183P in the HA gene. Antigenic data indicated that circulating A(H1N1)pdm09 viruses were similar to the 2018/2019 vaccine virus. Genetic data showed that A(H3N2) viruses mostly fell in clade 3C.2a (75%) and 90% of which were subclade 3C.2a1b. A lower proportion fell in clade 3C.3a (23%) and were antigenically distinct from the vaccine virus. All B/Victoria viruses belonged to clade 1A; 30% carried a double amino acid deletion in HA and were genetically and antigenically similar to the vaccine virus component, while 55% carried a triple amino acid deletion or no deletion in HA; these were antigenically distinct from each other and from the vaccine component. All B/Yamagata viruses belonged to clade 3 and were antigenically similar to the virus component in the quadrivalent vaccine for 2018/2019.A simultaneous circulation of genetically and antigenically diverse A(H3N2) and B/Victoria viruses was observed and represented a challenge to vaccine strain selection.
    Keywords amino acid deletion ; amino acid substitution ; genes ; hemagglutinins ; influenza ; monitoring ; vaccines ; viruses ; Europe
    Language English
    Dates of publication 2020-0731
    Size p. 5707-5717.
    Publishing place Elsevier Ltd
    Document type Article
    Note NAL-AP-2-clean
    ZDB-ID 605674-x
    ISSN 1873-2518 ; 0264-410X
    ISSN (online) 1873-2518
    ISSN 0264-410X
    DOI 10.1016/j.vaccine.2020.06.031
    Database NAL-Catalogue (AGRICOLA)

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