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  1. Article: Impact of intense sanitization on environmental biofilm communities and the survival of

    Wang, Rong / Guragain, Manita / Chitlapilly Dass, Sapna / Palanisamy, Vignesh / Bosilevac, Joseph M

    Frontiers in microbiology

    2024  Volume 15, Page(s) 1338600

    Abstract: Salmonella ... ...

    Abstract Salmonella enterica
    Language English
    Publishing date 2024-02-16
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2587354-4
    ISSN 1664-302X
    ISSN 1664-302X
    DOI 10.3389/fmicb.2024.1338600
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Salmonella

    Chen, Qiyue / Palanisamy, Vignesh / Wang, Rong / Bosilevac, Joseph M / Chitlapilly Dass, Sapna

    Microbiology spectrum

    2024  Volume 12, Issue 2, Page(s) e0234623

    Abstract: Salmonella ... ...

    Abstract Salmonella enterica
    MeSH term(s) Animals ; Cattle ; Ammonium Chloride/pharmacology ; Sanitation ; RNA, Ribosomal, 16S ; Salmonella/physiology ; Salmonella enterica ; Biofilms
    Chemical Substances Ammonium Chloride (01Q9PC255D) ; RNA, Ribosomal, 16S
    Language English
    Publishing date 2024-01-16
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2807133-5
    ISSN 2165-0497 ; 2165-0497
    ISSN (online) 2165-0497
    ISSN 2165-0497
    DOI 10.1128/spectrum.02346-23
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Uncommon cause of acute appendiceal torsion mucocele.

    Nyandoro, Munyaradzi Gift / Palanisamy, Vignesh Kumar / Singh, Rajesh Kumar

    BMJ case reports

    2022  Volume 15, Issue 7

    Abstract: Appendiceal torsion is a rare phenomenon, presenting with symptoms mimicking acute appendicitis. Preoperative imaging generally has a low pick-up rate of appendicular torsion and is thus mostly diagnosed intraoperatively. The cause of the appendicular ... ...

    Abstract Appendiceal torsion is a rare phenomenon, presenting with symptoms mimicking acute appendicitis. Preoperative imaging generally has a low pick-up rate of appendicular torsion and is thus mostly diagnosed intraoperatively. The cause of the appendicular torsion should guide the required surgical resection to ensure adequate oncological treatment. Therefore, emphasis should be placed on minimal tissue handling in such operative cases to reduce the risk of accidental rupture, tumour spillage and spread.
    MeSH term(s) Appendicitis/diagnosis ; Appendicitis/diagnostic imaging ; Appendix/diagnostic imaging ; Appendix/surgery ; Diagnosis, Differential ; Humans ; Intestinal Diseases/diagnosis ; Mucocele/diagnosis ; Mucocele/diagnostic imaging
    Language English
    Publishing date 2022-07-04
    Publishing country England
    Document type Case Reports ; Journal Article
    ISSN 1757-790X
    ISSN (online) 1757-790X
    DOI 10.1136/bcr-2022-249175
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Shotgun-metagenomics reveals a highly diverse and communal microbial network present in the drains of three beef-processing plants.

    Palanisamy, Vignesh / Bosilevac, Joseph M / Barkhouse, Darryll A / Velez, Sarah E / Chitlapilly Dass, Sapna

    Frontiers in cellular and infection microbiology

    2023  Volume 13, Page(s) 1240138

    Abstract: Background: Multi-species biofilms pose a problem in various environments, especially food-processing environments. The diversity of microorganisms in these biofilms plays a critical role in their integrity and protection against external biotic and ... ...

    Abstract Background: Multi-species biofilms pose a problem in various environments, especially food-processing environments. The diversity of microorganisms in these biofilms plays a critical role in their integrity and protection against external biotic and abiotic factors. Compared to single-species biofilms, mixed-species biofilms are more resistant to various stresses, including antimicrobials like sanitizers. Therefore, understanding the microbiome composition and diversity in biofilms and their metabolic potential is a priority when developing intervention techniques to combat foodborne pathogens in food processing environments.
    Methods: This study aimed to describe and compare the microbiome profile of 75 drain biofilm samples obtained from five different locations (Hotscale, Hotbox, Cooler, Processing, & Grind room) of three beef-processing plants (Plant A, B & C) taken over two timepoints 2017-18 (T1) and 2021 (T2) by shotgun sequencing.
    Results: Core microbiome analysis found Pseudomonas, Psychrobacter, and Acinetobacter to be the top three prevalent genera among the plants and locations. Alpha diversity analysis demonstrated a high diversity of microbiome present in all the plants and locations across the time points. Functional analysis showed the high metabolic potential of the microbial community with abundance of genes in metabolism, cell-adhesion, motility, and quorum sensing. Moreover, Quaternary Ammonium Compound (QAC) resistance genes were also observed, this is significant as QAC sanitizers are commonly used in many food processing facilities. Multi-functional genes such as transposases, polymerases, permeases, flagellar proteins, and Mobile Genetic Elements (MGEs) were found suggesting these are dynamic microbial communities that work together to protect themselves against environmental stresses through multiple defense mechanisms.
    Conclusion: This study provides a framework for understanding the collective microbial network spanning a beef processing system. The results can be used to develop intervention strategies to best control these highly communicative microbial networks.
    Language English
    Publishing date 2023-09-08
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2619676-1
    ISSN 2235-2988 ; 2235-2988
    ISSN (online) 2235-2988
    ISSN 2235-2988
    DOI 10.3389/fcimb.2023.1240138
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Characterization of boar semen microbiome and association with sperm quality parameters.

    McAnally, Brooke E / Smith, Molly S / Wiegert, Jeffrey G / Palanisamy, Vignesh / Chitlapilly Dass, Sapna / Poole, Rebecca K

    Journal of animal science

    2023  Volume 101

    Abstract: Elevated levels of bacteria within fresh extended boar semen are associated with decreased sperm longevity, therefore reducing the fertility of a semen dose. The objective of this study was to characterize the bacterial communities using 16S rRNA ... ...

    Abstract Elevated levels of bacteria within fresh extended boar semen are associated with decreased sperm longevity, therefore reducing the fertility of a semen dose. The objective of this study was to characterize the bacterial communities using 16S rRNA sequencing in freshly extended boar semen samples and relate the prevalence and diversity of the microbial population to sperm quality parameters 1) between studs, 2) between pooled and single-sire doses, and 3) over a 5-day period. Eight single-sire (n = 4 per stud) and eight pooled (n = 4 per stud) non-frozen extended semen doses were obtained from two boar studs (A and B). Pooled doses were the composite of the boar's ejaculates used in single-sire doses. Doses were subsampled for 5 d post-collection. Ten negative controls of each pooled dose (n = 2) and single-sire dose (n = 8) remained sealed until the last day. Microbiome analysis was achieved by examining the V4 hypervariable region of the 16S rRNA gene of flash-frozen samples. Two evaluators determined the average sperm motility and agglutination (0: no adhesion to 3: >50% adhesion) by averaging their estimates together at 10 random locations per slide. Stud A had greater sperm agglutination (1.6 vs. 1.0 ± 0.1; P < 0.01) than stud B. Sperm motility decreased over the 5-day period (P < 0.01) and tended (P = 0.09) to be greater in stud B than A (67.4% vs. 61.5% ± 0.02%). Compared with stud A, stud B had a greater relative abundance of Proteobacteria (60.0% vs. 47.2% ± 1.5%; P < 0.01) and a lower relative abundance of Firmicutes (22.5% vs. 31.9% ± 1.4%; P < 0.01). Moreover, stud A had a greater relative abundance of Bacteroidetes (6.3% vs. 5.3% ± 0.4%; P < 0.01) and Actinobacteria (11.5% vs. 10.1% ± 0.5%; P = 0.05) than stud B. Differences were found in alpha diversity for both Chao1 (P < 0.01) and Shannon (P < 0.01) diversity indexes among days 2, 3, 4, and 5 post-collection to day 1. For beta diversity, unweighted UniFrac metric on days 2, 3, 4, and 5 post-collection differed from those on day 1 (P < 0.01). There were significant correlations between sperm motility and relative abundance of Prevotella (r = -0.29), Ruminococcus (r = -0.24), and Bacteroides (r = -0.32). Additionally, there were significant correlations between sperm motility and Chao1 (r = -0.50) and Shannon's index (r = -0.36). These results demonstrate that differences in bacterial communities over time and between boar studs can be associated with variation in sperm quality.
    MeSH term(s) Male ; Animals ; Swine ; Semen ; RNA, Ribosomal, 16S/genetics ; Sperm Motility ; Spermatozoa ; Semen Analysis/veterinary ; Semen Preservation/veterinary
    Chemical Substances RNA, Ribosomal, 16S
    Language English
    Publishing date 2023-07-19
    Publishing country United States
    Document type Journal Article
    ZDB-ID 390959-1
    ISSN 1525-3163 ; 0021-8812
    ISSN (online) 1525-3163
    ISSN 0021-8812
    DOI 10.1093/jas/skad243
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article: Effect of chlorpyrifos on the earthworm Eudrilus euginae and their gut microbiome by toxicological and metagenomic analysis

    Krishnaswamy, Veena Gayathri / Jaffar, Mariyam Fathima / Sridharan, Rajalakshmi / Ganesh, Shruthi / Kalidas, Suryasri / Palanisamy, Vignesh / Mani, Kabilan

    World journal of microbiology & biotechnology. 2021 May, v. 37, no. 5

    2021  

    Abstract: The earthworms are important soil invertebrates and play a crucial role in pedogenesis. The application of pesticides and prolonged exposure to pesticides causes mortality of earthworms apart from profoundly affecting the resident gut microbiome. The ... ...

    Abstract The earthworms are important soil invertebrates and play a crucial role in pedogenesis. The application of pesticides and prolonged exposure to pesticides causes mortality of earthworms apart from profoundly affecting the resident gut microbiome. The microbiome plays a significant effect on the metabolic processes associated with earthworms. The pesticide Chlorpyrifos (CPF) was studied for its toxicity on Eudrilus euginae by toxicity studies. The LC₅₀ value of filter paper contact test and acute toxicity test was 3.8 mg/mL and 180 mg/kg. The prolonged exposure of earthworms to pesticide on reproductive toxicity resulted in the mortality of earthworms and absence of cocoon formation. Further, the effects of CPF on the whole gut microbiome of E. euginae was analyzed using a long amplicon Nanopore sequencing. Results indicated no fluctuations with Firmicutes and Bacteroidetes, that were found to be dominant at bacterial phyla level while at the genus level, remarkable differences were noticed. Clostridium dominated the earthworm gut prior to CPF exposure while Bacillus dominated after exposure. Similarly, the fungal members such as Ascomycota and Basidiomycota were observed to dominate the gut of earthworm at the phyla level before and after exposure to CPF. In contrast, Clavispora (65%) was the dominant genus before CPF exposure and Taloromyces (42%) dominated after the CPF exposure. Our study demonstrates the effect of CPF on the mortality of E. euginae while the amplicon sequencing established the unique microbiome of the gut in response to the CPF exposure.
    Keywords Bacteroidetes ; Basidiomycota ; Clavispora ; Clostridium ; Eudrilus ; acute toxicity ; biotechnology ; chlorpyrifos ; digestive system ; earthworms ; fungi ; intestinal microorganisms ; metagenomics ; microbiome ; mortality ; nanopores ; reproductive toxicology ; soil ; soil formation
    Language English
    Dates of publication 2021-05
    Size p. 76.
    Publishing place Springer Netherlands
    Document type Article
    Note NAL-AP-2-clean
    ZDB-ID 1499109-3
    ISSN 1573-0972 ; 0959-3993
    ISSN (online) 1573-0972
    ISSN 0959-3993
    DOI 10.1007/s11274-021-03040-3
    Database NAL-Catalogue (AGRICOLA)

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  7. Article ; Online: Effect of chlorpyrifos on the earthworm Eudrilus euginae and their gut microbiome by toxicological and metagenomic analysis.

    Krishnaswamy, Veena Gayathri / Jaffar, Mariyam Fathima / Sridharan, Rajalakshmi / Ganesh, Shruthi / Kalidas, Suryasri / Palanisamy, Vignesh / Mani, Kabilan

    World journal of microbiology & biotechnology

    2021  Volume 37, Issue 5, Page(s) 76

    Abstract: The earthworms are important soil invertebrates and play a crucial role in pedogenesis. The application of pesticides and prolonged exposure to pesticides causes mortality of earthworms apart from profoundly affecting the resident gut microbiome. The ... ...

    Abstract The earthworms are important soil invertebrates and play a crucial role in pedogenesis. The application of pesticides and prolonged exposure to pesticides causes mortality of earthworms apart from profoundly affecting the resident gut microbiome. The microbiome plays a significant effect on the metabolic processes associated with earthworms. The pesticide Chlorpyrifos (CPF) was studied for its toxicity on Eudrilus euginae by toxicity studies. The LC
    MeSH term(s) Animals ; Bacteria/classification ; Bacteria/drug effects ; Bacteria/genetics ; Chlorpyrifos/toxicity ; Fungi/classification ; Fungi/drug effects ; Fungi/genetics ; Gastrointestinal Microbiome/drug effects ; Insecticides/toxicity ; Metagenome ; Nanopore Sequencing ; Oligochaeta/drug effects ; RNA, Ribosomal, 16S ; Soil
    Chemical Substances Insecticides ; RNA, Ribosomal, 16S ; Soil ; Chlorpyrifos (JCS58I644W)
    Language English
    Publishing date 2021-03-31
    Publishing country Germany
    Document type Journal Article
    ZDB-ID 1499109-3
    ISSN 1573-0972 ; 0959-3993
    ISSN (online) 1573-0972
    ISSN 0959-3993
    DOI 10.1007/s11274-021-03040-3
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Prevalence of differential microbiome in healthy, diseased and nipped colonies of corals, Porites lutea in the Gulf of Kachchh, north-west coast of India.

    Krishnaswamy, Veena Gayathri / Mani, Kabilan / Senthil Kumar, P / Rangasamy, Gayathri / Sridharan, Rajalakshmi / Rethnaraj, Chandran / Amirtha Ganesh, Sai Sruthi / Kalidas, Suryasri / Palanisamy, Vignesh / Chellama, Nisha Jayasingh / Chowdula, Satyanarayana / Parthasarathy, V / Rajendran, Saravanan

    Environmental research

    2022  Volume 216, Issue Pt 2, Page(s) 114622

    Abstract: Coral reefs are constantly subjected to multiple stresses like diseases and fish predation, which can profoundly influence the coral microbiome. This study investigated the differences in bacterial community structure of healthy, white syndrome affected ... ...

    Abstract Coral reefs are constantly subjected to multiple stresses like diseases and fish predation, which can profoundly influence the coral microbiome. This study investigated the differences in bacterial community structure of healthy, white syndrome affected and blenny nipped coral colonies of Porites lutea, collected from the coral reefs of Gulf of Kachchh, north-west coast of India. Present study observed that the stressed coral colonies harbored more OTUs and contained higher diversity values compared to healthy corals colonies. Similarly, beta diversity analysis indicated the dissimilarities among the three coral samples analyzed. Though the taxonomy analysis indicated bacterial phyla like Proteobacteria, Firmicutes, Bacteroidetes, and Actinobacteria among the entire coral samples studied, there was a variation in their relative abundances. Huge variations were observed in the relative dominance at the bacterial genera level. About 13phyla and 11 genera was identified in healthy coral. The PBN sample was found to contain Proteobacteria, Cyanobacteria, Verrucomicrobia, and Lentisphaerae as dominant phyla and Endozoicomonas, Dyella, Woeseia, and Winogradskyella as dominant genera. The PWS sample contained Proteobacteria, Lentisphaerae, Spirochaetes, and Tenericutes as dominant phyla and Endozoicomonas, Arcobacter, Sunxiuqinia, and Carboxylicivirgia as dominant genera. Among the healthy samples, sequences belonging to Uncultured Rhodospirillaceae were dominant, while Woeseia and sequences belonging to Uncultured Rhodovibrionaceae were dominant among the blenny nipped white syndrome infected corals. Although any previously established pathogen was not identified, present study revealed the presence of a potentially pathogenic bacterium, Arcobacter, among the diseased corals. It also demonstrated a dynamic microbiome among the Porites lutea colonies on subjecting to various stresses.
    MeSH term(s) Animals ; Anthozoa/microbiology ; Prevalence ; Coral Reefs ; Microbiota ; Bacteria/genetics
    Language English
    Publishing date 2022-10-21
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 205699-9
    ISSN 1096-0953 ; 0013-9351
    ISSN (online) 1096-0953
    ISSN 0013-9351
    DOI 10.1016/j.envres.2022.114622
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Correlation of dental age, skeletal age, and chronological age among children aged 9-14 years: A retrospective study.

    Palanisamy, Vignesh / Rao, Arathi / Shenoy, Ramya / Baranya, Suprabha Srikrishna

    Journal of the Indian Society of Pedodontics and Preventive Dentistry

    2016  Volume 34, Issue 4, Page(s) 310–314

    Abstract: Background: Growth can be one of the most uncertain variations, but understanding the same is very important for diagnosis and treatment planning. Skeletal age and dental age have been used to determine a child's developmental age. Several researchers ... ...

    Abstract Background: Growth can be one of the most uncertain variations, but understanding the same is very important for diagnosis and treatment planning. Skeletal age and dental age have been used to determine a child's developmental age. Several researchers have evaluated the association between dental and skeletal maturity with chronologic age on different population. The purpose of the present study was to find out whether dental age estimation can be replaced for skeletal age estimation in the Dakshina Kannada population.
    Methods: A total of 104 samples equally distributed among both genders in the age group of 9-14 years were selected. Skeletal age was estimated using hand-wrist radiographs and Fishman's skeletal maturation index and dental age was measured using Demirjian's method.
    Results: Spearman's rank-order correlation coefficients were used to measure the association between the skeletal maturity and dental maturity. The mean ages of male and female samples were determined as 11.89 ± 1.867 years and 12.21 ± 1.473 years, respectively. Chronological age was found to be positively correlated to dental age and skeletal age and found to be statistically significant (P < 0.01). The correlation between dental age and skeletal age was also found to be statistically significant with P < 0.001 and correlation coefficient of 0.683 and 0.704 for males and females.
    Conclusion: The present study showed a strong relation between the developmental ages in mixed dentition population; hence, dental age can be considered as a replacement in the study population.
    Language English
    Publishing date 2016-10
    Publishing country India
    Document type Journal Article
    ZDB-ID 2164554-1
    ISSN 1998-3905 ; 0970-4388
    ISSN (online) 1998-3905
    ISSN 0970-4388
    DOI 10.4103/0970-4388.191408
    Database MEDical Literature Analysis and Retrieval System OnLINE

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