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Article ; Online: The Medical Institutional Repositories in Libraries (MIRL) Symposium: a blueprint designed in response to a community of practice need.

Fay, Brenda / Buda, Lisa M / Dellureficio, Anthony J / Hoover, Sara / Kubilius, Ramune K / Moore, Steven J / Palmer, Lisa A

Journal of the Medical Library Association : JMLA

2023 Volume 111, Issue 3, Page(s) 710–716

Abstract: Background: Health sciences libraries in medical schools, academic health centers, health care networks, and hospitals have established institutional repositories (IRs) to showcase their research achievements, increase visibility, expand the reach of ... ...

Abstract	Background: Health sciences libraries in medical schools, academic health centers, health care networks, and hospitals have established institutional repositories (IRs) to showcase their research achievements, increase visibility, expand the reach of institutional scholarship, and disseminate unique content. Newer roles for IRs include publishing open access journals, tracking researcher productivity, and serving as repositories for data sharing. Many repository managers oversee their IR with limited assistance from others at their institution. Therefore, IR practitioners find it valuable to network and learn from colleagues at other institutions. Case presentation: This case report describes the genesis and implementation of a new initiative specifically designed for a health sciences audience: the Medical Institutional Repositories in Libraries (MIRL) Symposium. Six medical librarians from hospitals and academic institutions in the U.S. organized the inaugural symposium held virtually in November 2021. The goal was to fill a perceived gap in conference programming for IR practitioners in health settings. Themes of the 2021 and subsequent 2022 symposium included IR management, increasing readership and engagement, and platform migration. Post-symposium surveys were completed by 73/238 attendees (31%) in 2021 and by 62/180 (34%) in 2022. Feedback was overwhelmingly positive. Discussion: Participant responses in post-symposium surveys rated MIRL highly. The MIRL planning group intends to continue the symposium and hopes MIRL will steadily evolve, build community among IR practitioners in the health sciences, and expand the conversation around best practices for digital archiving of institutional content. The implementation design of MIRL serves as a blueprint for collaboratively bringing together a professional community of practice.
MeSH term(s)	Humans ; Publishing ; Schools, Medical ; Communication ; Delivery of Health Care ; Libraries, Medical
Language	English
Publishing date	2023-08-07
Publishing country	United States
Document type	Case Reports
ZDB-ID	2072435-4
ISSN	1558-9439 ; 1536-5050
ISSN (online)	1558-9439
ISSN	1536-5050
DOI	10.5195/jmla.2023.1503
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Article ; Online: The institutional repository landscape in medical schools and academic health centers: a 2018 snapshot view and analysis.

Kipnis, Daniel G / Palmer, Lisa A / Kubilius, Ramune K

Journal of the Medical Library Association : JMLA

2019 Volume 107, Issue 4, Page(s) 488–498

Abstract: Objective: This study uses survey research methods to gain a deeper understanding of the institutional repository (IR) landscape in medical schools and academic health centers.: Methods: Members of the Association of Academic Health Sciences ... ...

Abstract	Objective: This study uses survey research methods to gain a deeper understanding of the institutional repository (IR) landscape in medical schools and academic health centers. Methods: Members of the Association of Academic Health Sciences Libraries (AAHSL) were surveyed about their IRs. The authors used a mixed-methods approach of a survey and qualitative content analysis to identify common themes. Results: Survey results indicate that a large majority of responding medical schools and academic health centers have or are implementing an IR (35 out of 50, 70%). Of these, 60% (21 institutions) participate in an institution-wide IR rather than administer their own repositories. Much of the archived content is grey literature that has not already been published, but the percentage of original content varies greatly among institutions. The majority (57.1%) of respondent institutions are not considering an open access policy or mandate. Most institutions (71.4%) reported that repository staff are depositing materials on behalf of users. DSpace and bepress Digital Commons are the most popular repository platforms in this community. The planned enhancements that were most frequently reported were implementing a discovery layer and ORCID integration. The majority of respondents (54.3%) do not plan to migrate to a different platform in the foreseeable future. Analysis of respondent comments identified the following themes: integration, redundancy, and reporting; alternatives and exploration; uniqueness; participation; and funding and operations. Conclusions: The study results capture a view of the IR landscape in medical schools and academic health centers and help readers understand what services their peers have in place as well as their plans for future developments.
MeSH term(s)	Academic Medical Centers/organization & administration ; Humans ; Information Storage and Retrieval/statistics & numerical data ; Libraries, Medical/organization & administration ; Schools, Medical/organization & administration
Language	English
Publishing date	2019-10-01
Publishing country	United States
Document type	Journal Article
ZDB-ID	2072435-4
ISSN	1558-9439 ; 1536-5050
ISSN (online)	1558-9439
ISSN	1536-5050
DOI	10.5195/jmla.2019.653
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Article ; Online: NIRDs Unite: Building a Community of Institutional Repository Practitioners in the Northeast.

Castro, Eleni / Jerome, Erin / Lukens, Colin / Macdonald, Mikki Simon / Palmer, Lisa A

Against the grain (Charleston, S.C.)

2020 Volume 31, Issue 5, Page(s) 34–36

Language	English
Publishing date	2020-08-19
Publishing country	United States
Document type	Journal Article
ISSN	2380-176X
ISSN (online)	2380-176X
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Article ; Online: Short-term facilitation of breathing upon cessation of hypoxic challenge is impaired in male but not female endothelial NOS knock-out mice.

Getsy, Paulina M / Sundararajan, Sripriya / May, Walter J / von Schill, Graham C / McLaughlin, Dylan K / Palmer, Lisa A / Lewis, Stephen J

Scientific reports

2021 Volume 11, Issue 1, Page(s) 18346

Abstract: Decreases in arterial blood oxygen stimulate increases in minute ventilation via activation of peripheral and central respiratory structures. This study evaluates the role of endothelial nitric oxide synthase (eNOS) in the expression of the ventilatory ... ...

Abstract	Decreases in arterial blood oxygen stimulate increases in minute ventilation via activation of peripheral and central respiratory structures. This study evaluates the role of endothelial nitric oxide synthase (eNOS) in the expression of the ventilatory responses during and following a hypoxic gas challenge (HXC, 10% O
MeSH term(s)	Animals ; Female ; Hypoxia/metabolism ; Hypoxia/physiopathology ; Male ; Mice ; Mice, Inbred C57BL ; Nitric Oxide Synthase Type III/deficiency ; Nitric Oxide Synthase Type III/genetics ; Nitric Oxide Synthase Type III/metabolism ; Pulmonary Ventilation ; Respiration ; Sex Factors ; Tidal Volume
Chemical Substances	Nitric Oxide Synthase Type III (EC 1.14.13.39)
Language	English
Publishing date	2021-09-15
Publishing country	England
Document type	Journal Article ; Research Support, N.I.H., Extramural
ZDB-ID	2615211-3
ISSN	2045-2322 ; 2045-2322
ISSN (online)	2045-2322
ISSN	2045-2322
DOI	10.1038/s41598-021-97322-3
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Article ; Online: Ventilatory responses during and following hypercapnic gas challenge are impaired in male but not female endothelial NOS knock-out mice.

Getsy, Paulina M / Sundararajan, Sripriya / May, Walter J / von Schill, Graham C / McLaughlin, Dylan K / Palmer, Lisa A / Lewis, Stephen J

Scientific reports

2021 Volume 11, Issue 1, Page(s) 20557

Abstract: The roles of endothelial nitric oxide synthase (eNOS) in the ventilatory responses during and after a hypercapnic gas challenge (HCC, 5% ... ...

Abstract	The roles of endothelial nitric oxide synthase (eNOS) in the ventilatory responses during and after a hypercapnic gas challenge (HCC, 5% CO
MeSH term(s)	Animals ; Female ; Hypercapnia/physiopathology ; Hypoxia ; Male ; Mice ; Mice, Inbred C57BL ; Mice, Knockout ; Nitric Oxide Synthase Type III/metabolism ; Nitric Oxide Synthase Type III/physiology ; Pulmonary Ventilation/genetics ; Pulmonary Ventilation/physiology ; Respiration ; Respiratory Insufficiency/physiopathology ; Tidal Volume
Chemical Substances	Nitric Oxide Synthase Type III (EC 1.14.13.39) ; Nos3 protein, mouse (EC 1.14.13.39)
Language	English
Publishing date	2021-10-18
Publishing country	England
Document type	Journal Article ; Research Support, N.I.H., Extramural
ZDB-ID	2615211-3
ISSN	2045-2322 ; 2045-2322
ISSN (online)	2045-2322
ISSN	2045-2322
DOI	10.1038/s41598-021-99922-5
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Article: Regulation of respiration and endothelial gene expression by S-nitrosothiols in health and disease.

Palmer, Lisa A

Proceedings of the American Thoracic Society

2006 Volume 3, Issue 2, Page(s) 166–169

Abstract: The effects of nitric oxide (NO) are mediated by cyclic guanosine monophosphate (cGMP)-dependent and cGMP-independent processes. Most cGMP-independent effects are mediated by the actions of S-nitrosothiols (SNOs). SNOs have been shown to play a role in ... ...

Abstract	The effects of nitric oxide (NO) are mediated by cyclic guanosine monophosphate (cGMP)-dependent and cGMP-independent processes. Most cGMP-independent effects are mediated by the actions of S-nitrosothiols (SNOs). SNOs have been shown to play a role in health and in disease. In studies performed in the mouse and rat, the ventilatory response to hypoxia is regulated in the nucleus tractus solitarius by SNOs exported from red blood cells. This may affect the treatment of respiratory distress in newborns and sleep apnea in adults. Likewise, SNOs have been shown to alter the stability and abundance of the transcription factor hypoxia inducible factor-1, altering the expression of hypoxia-regulated genes. Identification of the proteins involved in these signaling events will lead to new therapeutic approaches in the treatment of diseases characterized by limited oxygen availability.
MeSH term(s)	Animals ; Endothelium, Vascular/physiology ; Gene Expression Regulation ; Humans ; Hypoxia/physiopathology ; Hypoxia-Inducible Factor 1/genetics ; Respiratory Physiological Phenomena ; S-Nitrosothiols
Chemical Substances	Hypoxia-Inducible Factor 1 ; S-Nitrosothiols
Language	English
Publishing date	2006-04
Publishing country	United States
Document type	Journal Article ; Research Support, N.I.H., Extramural ; Review
ZDB-ID	2132421-9
ISSN	1943-5665 ; 1546-3222
ISSN (online)	1943-5665
ISSN	1546-3222
DOI	10.1513/pats.200506-063BG
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Article ; Online: Digitizing dissertations for an institutional repository: a process and cost analysis.

Piorun, Mary / Palmer, Lisa A

Journal of the Medical Library Association : JMLA

2008 Volume 96, Issue 3, Page(s) 223–229

Abstract: Objective: This paper describes the Lamar Soutter Library's process and costs associated with digitizing 300 doctoral dissertations for a newly implemented institutional repository at the University of Massachusetts Medical School.: Methodology: ... ...

Abstract	Objective: This paper describes the Lamar Soutter Library's process and costs associated with digitizing 300 doctoral dissertations for a newly implemented institutional repository at the University of Massachusetts Medical School. Methodology: Project tasks included identifying metadata elements, obtaining and tracking permissions, converting the dissertations to an electronic format, and coordinating workflow between library departments. Each dissertation was scanned, reviewed for quality control, enhanced with a table of contents, processed through an optical character recognition function, and added to the institutional repository. Results: Three hundred and twenty dissertations were digitized and added to the repository for a cost of $23,562, or $0.28 per page. Seventy-four percent of the authors who were contacted (n = 282) granted permission to digitize their dissertations. Processing time per title was 170 minutes, for a total processing time of 906 hours. In the first 17 months, full-text dissertations in the collection were downloaded 17,555 times. Conclusion: Locally digitizing dissertations or other scholarly works for inclusion in institutional repositories can be cost effective, especially if small, defined projects are chosen. A successful project serves as an excellent recruitment strategy for the institutional repository and helps libraries build new relationships. Challenges include workflow, cost, policy development, and copyright permissions.
MeSH term(s)	Academic Dissertations as Topic ; Costs and Cost Analysis ; Databases as Topic ; Humans ; Libraries, Digital/economics ; Libraries, Medical ; Massachusetts ; Schools, Medical
Language	English
Publishing date	2008-07-25
Publishing country	United States
Document type	Journal Article
ZDB-ID	2072435-4
ISSN	1558-9439 ; 1536-5050
ISSN (online)	1558-9439
ISSN	1536-5050
DOI	10.3163/1536-5050.96.3.008
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Article: S-nitrosothiol assays that avoid the use of iodine.

Palmer, Lisa A / Gaston, Benjamin

Methods in enzymology

2008 Volume 440, Page(s) 157–176

Abstract: S-Nitrosylation is a ubiquitous signaling process in biological systems. Research regarding this signaling has been hampered, however, by assays that lack sensitivity and specificity. In particular, iodine-based assays for S-nitrosothiols (1) produce ... ...

Abstract	S-Nitrosylation is a ubiquitous signaling process in biological systems. Research regarding this signaling has been hampered, however, by assays that lack sensitivity and specificity. In particular, iodine-based assays for S-nitrosothiols (1) produce nitrosyliodide, a potent nitrosating agent that can be lost to reactions in the biological sample being studied; (2) require pretreatment of biological samples with several reagents that react with proteins, artifactually forming or breaking S-NO bonds before the assay; and (3) are not sensitive or specific for nitrogen oxides in biological samples, reporting a wide range of different concentrations and falsely reporting NO-modified proteins, to be nitrite. These data, therefore, suggest that iodine-based assays should never be used for biological S-nitrosothiols. There are other assays that provide reasonably sensitive and accurate data regarding biological S-nitrosothiols, including assays based on mass spectrometry, spectrophotometry, chemiluminescence, fluorescence, and immunostaining. Each assay, however, has limitations and should be quantitatively complemented by separate assays. Continued improvement in assays will facilitate improved understanding of S-nitrosylation signaling.
MeSH term(s)	Animals ; Humans ; Iodine ; S-Nitrosothiols/analysis ; Sensitivity and Specificity ; Signal Transduction
Chemical Substances	S-Nitrosothiols ; Iodine (9679TC07X4)
Language	English
Publishing date	2008
Publishing country	United States
Document type	Comparative Study ; Journal Article ; Review
ISSN	0076-6879
ISSN	0076-6879
DOI	10.1016/S0076-6879(07)00809-9
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Article ; Online: NADPH diaphorase detects S-nitrosylated proteins in aldehyde-treated biological tissues.

Seckler, James M / Shen, Jinshan / Lewis, Tristan H J / Abdulameer, Mohammed A / Zaman, Khalequz / Palmer, Lisa A / Bates, James N / Jenkins, Michael W / Lewis, Stephen J

Scientific reports

2020 Volume 10, Issue 1, Page(s) 21088

Abstract: NADPH diaphorase is used as a histochemical marker of nitric oxide synthase (NOS) in aldehyde-treated tissues. It is thought that the catalytic activity of NOS promotes NADPH-dependent reduction of nitro-blue tetrazolium (NBT) to diformazan. However, it ... ...

Abstract	NADPH diaphorase is used as a histochemical marker of nitric oxide synthase (NOS) in aldehyde-treated tissues. It is thought that the catalytic activity of NOS promotes NADPH-dependent reduction of nitro-blue tetrazolium (NBT) to diformazan. However, it has been argued that a proteinaceous factor other than NOS is responsible for producing diformazan in aldehyde-treated tissues. We propose this is a NO-containing factor such as an S-nitrosothiol and/or a dinitrosyl-iron (II) cysteine complex or nitrosated proteins including NOS. We now report that (1) S-nitrosothiols covalently modify both NBT and TNBT, but only change the reduction potential of NBT after modification, (2) addition of S-nitrosothiols or β- or α-NADPH to solutions of NBT did not elicit diformazan, (3) addition of S-nitrosothiols to solutions of NBT plus β- or α-NADPH elicited rapid formation of diformazan in the absence or presence of paraformaldehyde, (4) addition of S-nitrosothiols to solutions of NBT plus β- or α-NADP did not produce diformazan, (5) S-nitrosothiols did not promote NADPH-dependent reduction of tetra-nitro-blue tetrazolium (TNBT) in which all four phenolic rings are nitrated, (6) cytoplasmic vesicles in vascular endothelial cells known to stain for NADPH diaphorase were rich in S-nitrosothiols, and (7) procedures that accelerate decomposition of S-nitrosothiols, markedly reduced NADPH diaphorase staining in tissue sections subsequently subjected to paraformaldehyde fixation. Our results suggest that NADPH diaphorase in aldehyde-fixed tissues is not enzymatic but is due to the presence of NO-containing factors (free SNOs or nitrosated proteins such as NOS), which promote NADPH-dependent reduction of NBT to diformazan.
MeSH term(s)	Animals ; Azo Compounds/metabolism ; Brain Stem/chemistry ; Brain Stem/drug effects ; Brain Stem/metabolism ; Cerebellum/chemistry ; Cerebellum/drug effects ; Cerebellum/metabolism ; Formaldehyde/pharmacology ; Male ; NADPH Dehydrogenase/metabolism ; Nitric Oxide Synthase/metabolism ; Nitroblue Tetrazolium/metabolism ; Oxidation-Reduction ; Polymers/pharmacology ; Rats ; Rats, Sprague-Dawley ; S-Nitrosothiols/metabolism ; Staining and Labeling/methods ; Staining and Labeling/standards
Chemical Substances	Azo Compounds ; Polymers ; S-Nitrosothiols ; diformazan dye (12797-93-2) ; Formaldehyde (1HG84L3525) ; Nitroblue Tetrazolium (298-83-9) ; Nitric Oxide Synthase (EC 1.14.13.39) ; NADPH Dehydrogenase (EC 1.6.99.1) ; paraform (Y19UC83H8E)
Language	English
Publishing date	2020-12-03
Publishing country	England
Document type	Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
ZDB-ID	2615211-3
ISSN	2045-2322 ; 2045-2322
ISSN (online)	2045-2322
ISSN	2045-2322
DOI	10.1038/s41598-020-78107-6
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Article ; Online: SNO-hemoglobin and hypoxic vasodilation.

Palmer, Lisa A / Doctor, Allan / Gaston, Benjamin

Nature medicine

2008 Volume 14, Issue 10, Page(s) 1009; author reply 1009–10

MeSH term(s)	Animals ; Erythrocytes/physiology ; Hemoglobins/chemistry ; Hemoglobins/physiology ; Humans ; Hypoxia/physiopathology ; Mice ; Vasodilation/physiology
Chemical Substances	Hemoglobins ; S-nitrosohemoglobin
Language	English
Publishing date	2008-04-18
Publishing country	United States
Document type	Letter ; Comment
ZDB-ID	1220066-9
ISSN	1546-170X ; 1078-8956
ISSN (online)	1546-170X
ISSN	1078-8956
DOI	10.1038/nm1008-1009a
Database	MEDical Literature Analysis and Retrieval System OnLINE

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