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  1. Article ; Online: An overview of Agaricus section Hondenses and Agaricus section Xanthodermatei with description of eight new species from Pakistan.

    Bashir, Hira / Chen, Jie / Jabeen, Sana / Ullah, Sadiq / Khan, Junaid / Niazi, Abdul Rehman / Zhang, Mingzhe / Khalid, Abdul Nasir / Parra, Luis Alberto / Callac, Philippe

    Scientific reports

    2021  Volume 11, Issue 1, Page(s) 12905

    Abstract: In a recent revision of the genus Agaricus, A. section Xanthodermatei was split into two sections A. sect. Hondenses and A. sect. Xanthodermatei. Our objectives were to investigate the species diversity of both sections in Pakistan and to give an ... ...

    Abstract In a recent revision of the genus Agaricus, A. section Xanthodermatei was split into two sections A. sect. Hondenses and A. sect. Xanthodermatei. Our objectives were to investigate the species diversity of both sections in Pakistan and to give an overview of the major clades. Phylogenetic analyses based on the combined nucLSU, ITS and TEF1 dataset from 35 specimens of both sections revealed three major clades. Analyses based on ITS dataset and 106 specimens, including 33 from Pakistan, reveal eight new species and one new record species. These nine species are described in detail. It is noteworthy that intraspecific variability as well as interspecific variability between closely related species were very low in ITS sequences in many cases. In the case of the two new species A. xanthochromaticus and A. griseovariegatus, TEF1 sequence data were much more efficient than ITS to distinguish these species from each other. The other new species are A. atroumbonatus, A. fumidicolor, A. macropeplus, A. parviniveus, A. swaticus and A. bambusetorum. The latter is the only new species of A. sect. Hondenses in which it is morphologically atypical and also the unique (sub)tropical species. Agaricus gregariomyces is recorded for the first time in Pakistan. In addition, brief descriptions are provided not only for A. bisporiticus, A. endoxanthus and A. punjabensis, which are reported again in Pakistan, but also for A. californicus, which is reported for the first time in Spain and outside North America. In total 12 species of both sections were reported in Pakistan and half of them were from subtropical climatic areas, underlining the contribution of the climatic diversity to the high species richness in this country.
    MeSH term(s) Agaricus/classification ; Agaricus/cytology ; Agaricus/genetics ; Agaricus/isolation & purification ; DNA, Ribosomal Spacer ; Genetic Variation ; Pakistan ; Phenotype ; Phylogeny ; Sequence Analysis, DNA
    Chemical Substances DNA, Ribosomal Spacer
    Language English
    Publishing date 2021-06-18
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-021-92261-5
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Considerations and consequences of allowing DNA sequence data as types of fungal taxa

    Zamora, Juan Carlos / Svensson, Måns / Kirschner, Roland / Olariaga, Ibai / Ryman, Svengunnar / Parra, Luis Alberto / Geml, József / Rosling, Anna / Adamčík, Slavomír / Ahti, Teuvo / Aime, M.C. / Ainsworth, A.M. / Albert, László / Albertó, Edgardo / García, Alberto Altés / Ageev, Dmitry / Agerer, Reinhard / Aguirre-Hudson, Begoña / Ammirati, Joe /
    Andersson, Harry / Angelini, Claudio / Antonín, Vladimír / Aoki, Takayuki / Aptroot, André / Argaud, Didier / Sosa, Blanca Imelda Arguello / Aronsen, Arne / Arup, Ulf / Asgari, Bita / Assyov, Boris / Atienza, Violeta / Bandini, Ditte / Baptista-Ferreira, João Luís / Baral, Hans-Otto / Baroni, Tim / Barreto, Robert Weingart / Beker, Henry / Bell, Ann / Bellanger, Jean-Michel / Bellù, Francesco / Bemmann, Martin / Bendiksby, Mika / Bendiksen, Egil / Bendiksen, Katriina / Benedek, Lajos / Bérešová-Guttová, Anna / Berger, Franz / Berndt, Reinhard / Bernicchia, Annarosa / Biketova, Alona Yu. / Bizio, Enrico / Bjork, Curtis / Boekhout, Teun / Boertmann, David / Böhning, Tanja / Boittin, Florent / Boluda, Carlos G. / Boomsluiter, Menno W. / Borovička, Jan / Brandrud, Tor Erik / Braun, Uwe / Brodo, Irwin / Bulyonkova, Tatiana / Burdsall, Harold H. / Buyck, Bart / Burgaz, Ana Rosa / Calatayud, Vicent / Callac, Philippe / Campo, Emanuele / Candusso, Massimo / Capoen, Brigitte / Carbó, Joaquim / Carbone, Matteo / Castañeda-ruiz, Rafael F. / Castellano, Michael A. / Chen, Jie / Clerc, Philippe / Consiglio, Giovanni / Corriol, Gilles / Courtecuisse, Régis / Crespo, Ana / Cripps, Cathy / Crous, Pedro W. / Silva, Gladstone Alves Da / Silva, Meiriele Da / Dam, Marjo / Dam, Nico / Dämmrich, Frank / Das, Kanad / Davies, Linda / De Crop, Eske / De Kesel, Andre / Kuijper, T.W.M.

    IMA fungus

    2018  Volume 9, Issue 1

    Abstract: Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological ... ...

    Abstract Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological diversity) with nomenclature (an artificial agreement to name biological diversity). Two proposals to amend the International Code of Nomenclature for algae, fungi, and plants (ICN), allowing DNA sequences alone (of any region and extent) to serve as types of taxon names for voucherless fungi (mainly putative taxa from environmental DNA sequences), have been submitted to be voted on at the 11th International Mycological Congress (Puerto Rico, July 2018). We consider various genetic processes affecting the distribution of alleles among taxa and find that alleles may not consistently and uniquely represent the species within which they are contained. Should the proposals be accepted, the meaning of nomenclatural types would change in a fundamental way from physical objects as sources of data to the data themselves. Such changes are conducive to irreproducible science, the potential typification on artefactual data, and massive creation of names with low information content, ultimately causing nomenclatural instability and unnecessary work for future researchers that would stall future explorations of fungal diversity. We conclude that the acceptance of DNA sequences alone as types of names of taxa, under the terms used in the current proposals, is unnecessary and would not solve the problem of naming putative taxa known only from DNA sequences in a scientifically defensible way. As an alternative, we highlight the use of formulas for naming putative taxa (candidate taxa) that do not require any modification of the ICN.
    Keywords IMC11 nomenclature ; Speciation ; Taxonomy ; Typification ; Voucherless fungi
    Subject code 612
    Language English
    Publishing country nl
    Document type Article ; Online
    ZDB-ID 2666116-0
    ISSN 2210-6359 ; 2210-6340
    ISSN (online) 2210-6359
    ISSN 2210-6340
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  3. Article: Considerations and consequences of allowing DNA sequence data as types of fungal taxa.

    Zamora, Juan Carlos / Svensson, Måns / Kirschner, Roland / Olariaga, Ibai / Ryman, Svengunnar / Parra, Luis Alberto / Geml, József / Rosling, Anna / Adamčík, Slavomír / Ahti, Teuvo / Aime, M Catherine / Ainsworth, A Martyn / Albert, László / Albertó, Edgardo / García, Alberto Altés / Ageev, Dmitry / Agerer, Reinhard / Aguirre-Hudson, Begoña / Ammirati, Joe /
    Andersson, Harry / Angelini, Claudio / Antonín, Vladimír / Aoki, Takayuki / Aptroot, André / Argaud, Didier / Sosa, Blanca Imelda Arguello / Aronsen, Arne / Arup, Ulf / Asgari, Bita / Assyov, Boris / Atienza, Violeta / Bandini, Ditte / Baptista-Ferreira, João Luís / Baral, Hans-Otto / Baroni, Tim / Barreto, Robert Weingart / Beker, Henry / Bell, Ann / Bellanger, Jean-Michel / Bellù, Francesco / Bemmann, Martin / Bendiksby, Mika / Bendiksen, Egil / Bendiksen, Katriina / Benedek, Lajos / Bérešová-Guttová, Anna / Berger, Franz / Berndt, Reinhard / Bernicchia, Annarosa / Biketova, Alona Yu / Bizio, Enrico / Bjork, Curtis / Boekhout, Teun / Boertmann, David / Böhning, Tanja / Boittin, Florent / Boluda, Carlos G / Boomsluiter, Menno W / Borovička, Jan / Brandrud, Tor Erik / Braun, Uwe / Brodo, Irwin / Bulyonkova, Tatiana / Burdsall, Harold H / Buyck, Bart / Burgaz, Ana Rosa / Calatayud, Vicent / Callac, Philippe / Campo, Emanuele / Candusso, Massimo / Capoen, Brigitte / Carbó, Joaquim / Carbone, Matteo / Castañeda-Ruiz, Rafael F / Castellano, Michael A / Chen, Jie / Clerc, Philippe / Consiglio, Giovanni / Corriol, Gilles / Courtecuisse, Régis / Crespo, Ana / Cripps, Cathy / Crous, Pedro W / da Silva, Gladstone Alves / da Silva, Meiriele / Dam, Marjo / Dam, Nico / Dämmrich, Frank / Das, Kanad / Davies, Linda / De Crop, Eske / De Kesel, Andre / De Lange, Ruben / De Madrignac Bonzi, Bárbara / Dela Cruz, Thomas Edison E / Delgat, Lynn / Demoulin, Vincent / Desjardin, Dennis E / Diederich, Paul / Dima, Bálint / Dios, Maria Martha / Divakar, Pradeep Kumar / Douanla-Meli, Clovis / Douglas, Brian / Drechsler-Santos, Elisandro Ricardo / Dyer, Paul S / Eberhardt, Ursula / Ertz, Damien / Esteve-Raventós, Fernando / Salazar, Javier Angel Etayo / Evenson, Vera / Eyssartier, Guillaume / Farkas, Edit / Favre, Alain / Fedosova, Anna G / Filippa, Mario / Finy, Péter / Flakus, Adam / Fos, Simón / Fournier, Jacques / Fraiture, André / Franchi, Paolo / Molano, Ana Esperanza Franco / Friebes, Gernot / Frisch, Andreas / Fryday, Alan / Furci, Giuliana / Márquez, Ricardo Galán / Garbelotto, Matteo / García-Martín, Joaquina María / Otálora, Mónica A García / Sánchez, Dania García / Gardiennet, Alain / Garnica, Sigisfredo / Benavent, Isaac Garrido / Gates, Genevieve / da Cruz Lima Gerlach, Alice / Ghobad-Nejhad, Masoomeh / Gibertoni, Tatiana B / Grebenc, Tine / Greilhuber, Irmgard / Grishkan, Bella / Groenewald, Johannes Z / Grube, Martin / Gruhn, Gérald / Gueidan, Cécile / Gulden, Gro / Gusmão, Luis Fp / Hafellner, Josef / Hairaud, Michel / Halama, Marek / Hallenberg, Nils / Halling, Roy E / Hansen, Karen / Harder, Christoffer Bugge / Heilmann-Clausen, Jacob / Helleman, Stip / Henriot, Alain / Hernandez-Restrepo, Margarita / Herve, Raphaël / Hobart, Caroline / Hoffmeister, Mascha / Høiland, Klaus / Holec, Jan / Holien, Håkon / Hughes, Karen / Hubka, Vit / Huhtinen, Seppo / Ivančević, Boris / Jagers, Marian / Jaklitsch, Walter / Jansen, AnnaElise / Jayawardena, Ruvishika S / Jeppesen, Thomas Stjernegaard / Jeppson, Mikael / Johnston, Peter / Jørgensen, Per Magnus / Kärnefelt, Ingvar / Kalinina, Liudmila B / Kantvilas, Gintaras / Karadelev, Mitko / Kasuya, Taiga / Kautmanová, Ivona / Kerrigan, Richard W / Kirchmair, Martin / Kiyashko, Anna / Knapp, Dániel G / Knudsen, Henning / Knudsen, Kerry / Knutsson, Tommy / Kolařík, Miroslav / Kõljalg, Urmas / Košuthová, Alica / Koszka, Attila / Kotiranta, Heikki / Kotkova, Vera / Koukol, Ondřej / Kout, Jiří / Kovács, Gábor M / Kříž, Martin / Kruys, Åsa / Kučera, Viktor / Kudzma, Linas / Kuhar, Francisco / Kukwa, Martin / Arun Kumar, T K / Kunca, Vladimír / Kušan, Ivana / Kuyper, Thomas W / Lado, Carlos / Læssøe, Thomas / Lainé, Patrice / Langer, Ewald / Larsson, Ellen / Larsson, Karl-Henrik / Laursen, Gary / Lechat, Christian / Lee, Serena / Lendemer, James C / Levin, Laura / Lindemann, Uwe / Lindström, Håkan / Liu, Xingzhong / Hernandez, Regulo Carlos Llarena / Llop, Esteve / Locsmándi, Csaba / Lodge, Deborah Jean / Loizides, Michael / Lőkös, László / Luangsa-Ard, Jennifer / Lüderitz, Matthias / Lumbsch, Thorsten / Lutz, Matthias / Mahoney, Dan / Malysheva, Ekaterina / Malysheva, Vera / Manimohan, Patinjareveettil / Marin-Felix, Yasmina / Marques, Guilhermina / Martínez-Gil, Rubén / Marson, Guy / Mata, Gerardo / Matheny, P Brandon / Mathiassen, Geir Harald / Matočec, Neven / Mayrhofer, Helmut / Mehrabi, Mehdi / Melo, Ireneia / Mešić, Armin / Methven, Andrew S / Miettinen, Otto / Romero, Ana M Millanes / Miller, Andrew N / Mitchell, James K / Moberg, Roland / Moreau, Pierre-Arthur / Moreno, Gabriel / Morozova, Olga / Morte, Asunción / Muggia, Lucia / González, Guillermo Muñoz / Myllys, Leena / Nagy, István / Nagy, László G / Neves, Maria Alice / Niemelä, Tuomo / Nimis, Pier Luigi / Niveiro, Nicolas / Noordeloos, Machiel E / Nordin, Anders / Noumeur, Sara Raouia / Novozhilov, Yuri / Nuytinck, Jorinde / Ohenoja, Esteri / Fiuza, Patricia Oliveira / Orange, Alan / Ordynets, Alexander / Ortiz-Santana, Beatriz / Pacheco, Leticia / Pál-Fám, Ferenc / Palacio, Melissa / Palice, Zdeněk / Papp, Viktor / Pärtel, Kadri / Pawlowska, Julia / Paz, Aurelia / Peintner, Ursula / Pennycook, Shaun / Pereira, Olinto Liparini / Daniëls, Pablo Pérez / Pérez-De-Gregorio Capella, Miquel À / Del Amo, Carlos Manuel Pérez / Gorjón, Sergio Pérez / Pérez-Ortega, Sergio / Pérez-Vargas, Israel / Perry, Brian A / Petersen, Jens H / Petersen, Ronald H / Pfister, Donald H / Phukhamsakda, Chayanard / Piątek, Marcin / Piepenbring, Meike / Pino-Bodas, Raquel / Esquivel, Juan Pablo Pinzón / Pirot, Paul / Popov, Eugene S / Popoff, Orlando / Álvaro, María Prieto / Printzen, Christian / Psurtseva, Nadezhda / Purahong, Witoon / Quijada, Luis / Rambold, Gerhard / Ramírez, Natalia A / Raja, Huzefa / Raspé, Olivier / Raymundo, Tania / Réblová, Martina / Rebriev, Yury A / de Dios Reyes García, Juan / Ripoll, Miguel Ángel Ribes / Richard, Franck / Richardson, Mike J / Rico, Víctor J / Robledo, Gerardo Lucio / Barbosa, Flavia Rodrigues / Rodriguez-Caycedo, Cristina / Rodriguez-Flakus, Pamela / Ronikier, Anna / Casas, Luis Rubio / Rusevska, Katerina / Saar, Günter / Saar, Irja / Salcedo, Isabel / Martínez, Sergio M Salcedo / Montoya, Carlos A Salvador / Sánchez-Ramírez, Santiago / Sandoval-Sierra, J Vladimir / Santamaria, Sergi / Monteiro, Josiane Santana / Schroers, Hans Josef / Schulz, Barbara / Schmidt-Stohn, Geert / Schumacher, Trond / Senn-Irlet, Beatrice / Ševčíková, Hana / Shchepin, Oleg / Shirouzu, Takashi / Shiryaev, Anton / Siepe, Klaus / Sir, Esteban B / Sohrabi, Mohammad / Soop, Karl / Spirin, Viacheslav / Spribille, Toby / Stadler, Marc / Stalpers, Joost / Stenroos, Soili / Suija, Ave / Sunhede, Stellan / Svantesson, Sten / Svensson, Sigvard / Svetasheva, Tatyana Yu / Świerkosz, Krzysztof / Tamm, Heidi / Taskin, Hatira / Taudière, Adrien / Tedebrand, Jan-Olof / Lahoz, Raúl Tena / Temina, Marina / Thell, Arne / Thines, Marco / Thor, Göran / Thüs, Holger / Tibell, Leif / Tibell, Sanja / Timdal, Einar / Tkalčec, Zdenko / Tønsberg, Tor / Trichies, Gérard / Triebel, Dagmar / Tsurykau, Andrei / Tulloss, Rodham E / Tuovinen, Veera / Sosa, Miguel Ulloa / Urcelay, Carlos / Valade, François / Garza, Ricardo Valenzuela / van den Boom, Pieter / Van Vooren, Nicolas / Vasco-Palacios, Aida M / Vauras, Jukka / Velasco Santos, Juan Manuel / Vellinga, Else / Verbeken, Annemieke / Vetlesen, Per / Vizzini, Alfredo / Voglmayr, Hermann / Volobuev, Sergey / von Brackel, Wolfgang / Voronina, Elena / Walther, Grit / Watling, Roy / Weber, Evi / Wedin, Mats / Weholt, Øyvind / Westberg, Martin / Yurchenko, Eugene / Zehnálek, Petr / Zhang, Huang / Zhurbenko, Mikhail P / Ekman, Stefan

    IMA fungus

    2018  Volume 9, Issue 1, Page(s) 167–175

    Abstract: Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological ... ...

    Abstract Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological diversity) with nomenclature (an artificial agreement to name biological diversity). Two proposals to amend the International Code of Nomenclature for algae, fungi, and plants (ICN), allowing DNA sequences alone (of any region and extent) to serve as types of taxon names for voucherless fungi (mainly putative taxa from environmental DNA sequences), have been submitted to be voted on at the 11
    Language English
    Publishing date 2018-05-24
    Publishing country England
    Document type Journal Article
    ZDB-ID 2666116-0
    ISSN 2210-6359 ; 2210-6340
    ISSN (online) 2210-6359
    ISSN 2210-6340
    DOI 10.5598/imafungus.2018.09.01.10
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Considerations and consequences of allowing DNA sequence data as types of fungal taxa.

    Zamora, Juan Carlos / Svensson, Måns / Kirschner, Roland / Olariaga, Ibai / Ryman, Svengunnar / Parra, Luis Alberto / Geml, József / Rosling, Anna / Adamčík, Slavomír / Ahti, Teuvo / Aime, M Catherine / Ainsworth, A Martyn / Albert, László / Albertó, Edgardo / García, Alberto Altés / Ageev, Dmitry / Agerer, Reinhard / Aguirre-Hudson, Begoña / Ammirati, Joe /
    Andersson, Harry / Angelini, Claudio / Antonín, Vladimír / Aoki, Takayuki / Aptroot, André / Argaud, Didier / Sosa, Blanca Imelda Arguello / Aronsen, Arne / Arup, Ulf / Asgari, Bita / Assyov, Boris / Atienza, Violeta / Bandini, Ditte / Baptista-Ferreira, João Luís / Baral, Hans-Otto / Baroni, Tim / Barreto, Robert Weingart / Beker, Henry / Bell, Ann / Bellanger, Jean-Michel / Bellù, Francesco / Bemmann, Martin / Bendiksby, Mika / Bendiksen, Egil / Bendiksen, Katriina / Benedek, Lajos / Bérešová-Guttová, Anna / Berger, Franz / Berndt, Reinhard / Bernicchia, Annarosa / Biketova, Alona Yu / Bizio, Enrico / Bjork, Curtis / Boekhout, Teun / Boertmann, David / Böhning, Tanja / Boittin, Florent / Boluda, Carlos G / Boomsluiter, Menno W / Borovička, Jan / Brandrud, Tor Erik / Braun, Uwe / Brodo, Irwin / Bulyonkova, Tatiana / Burdsall, Harold H / Buyck, Bart / Burgaz, Ana Rosa / Calatayud, Vicent / Callac, Philippe / Campo, Emanuele / Candusso, Massimo / Capoen, Brigitte / Carbó, Joaquim / Carbone, Matteo / Castañeda-Ruiz, Rafael F / Castellano, Michael A / Chen, Jie / Clerc, Philippe / Consiglio, Giovanni / Corriol, Gilles / Courtecuisse, Régis / Crespo, Ana / Cripps, Cathy / Crous, Pedro W / da Silva, Gladstone Alves / da Silva, Meiriele / Dam, Marjo / Dam, Nico / Dämmrich, Frank / Das, Kanad / Davies, Linda / De Crop, Eske / De Kesel, Andre / De Lange, Ruben / De Madrignac Bonzi, Bárbara / Dela Cruz, Thomas Edison E / Delgat, Lynn / Demoulin, Vincent / Desjardin, Dennis E / Diederich, Paul / Dima, Bálint / Dios, Maria Martha / Divakar, Pradeep Kumar / Douanla-Meli, Clovis / Douglas, Brian / Drechsler-Santos, Elisandro Ricardo / Dyer, Paul S / Eberhardt, Ursula / Ertz, Damien / Esteve-Raventós, Fernando / Salazar, Javier Angel Etayo / Evenson, Vera / Eyssartier, Guillaume / Farkas, Edit / Favre, Alain / Fedosova, Anna G / Filippa, Mario / Finy, Péter / Flakus, Adam / Fos, Simón / Fournier, Jacques / Fraiture, André / Franchi, Paolo / Molano, Ana Esperanza Franco / Friebes, Gernot / Frisch, Andreas / Fryday, Alan / Furci, Giuliana / Márquez, Ricardo Galán / Garbelotto, Matteo / García-Martín, Joaquina María / Otálora, Mónica A García / Sánchez, Dania García / Gardiennet, Alain / Garnica, Sigisfredo / Benavent, Isaac Garrido / Gates, Genevieve / da Cruz Lima Gerlach, Alice / Ghobad-Nejhad, Masoomeh / Gibertoni, Tatiana B / Grebenc, Tine / Greilhuber, Irmgard / Grishkan, Bella / Groenewald, Johannes Z / Grube, Martin / Gruhn, Gérald / Gueidan, Cécile / Gulden, Gro / Gusmão, Luis Fp / Hafellner, Josef / Hairaud, Michel / Halama, Marek / Hallenberg, Nils / Halling, Roy E / Hansen, Karen / Harder, Christoffer Bugge / Heilmann-Clausen, Jacob / Helleman, Stip / Henriot, Alain / Hernandez-Restrepo, Margarita / Herve, Raphaël / Hobart, Caroline / Hoffmeister, Mascha / Høiland, Klaus / Holec, Jan / Holien, Håkon / Hughes, Karen / Hubka, Vit / Huhtinen, Seppo / Ivančević, Boris / Jagers, Marian / Jaklitsch, Walter / Jansen, AnnaElise / Jayawardena, Ruvishika S / Jeppesen, Thomas Stjernegaard / Jeppson, Mikael / Johnston, Peter / Jørgensen, Per Magnus / Kärnefelt, Ingvar / Kalinina, Liudmila B / Kantvilas, Gintaras / Karadelev, Mitko / Kasuya, Taiga / Kautmanová, Ivona / Kerrigan, Richard W / Kirchmair, Martin / Kiyashko, Anna / Knapp, Dániel G / Knudsen, Henning / Knudsen, Kerry / Knutsson, Tommy / Kolařík, Miroslav / Kõljalg, Urmas / Košuthová, Alica / Koszka, Attila / Kotiranta, Heikki / Kotkova, Vera / Koukol, Ondřej / Kout, Jiří / Kovács, Gábor M / Kříž, Martin / Kruys, Åsa / Kučera, Viktor / Kudzma, Linas / Kuhar, Francisco / Kukwa, Martin / Arun Kumar, T K / Kunca, Vladimír / Kušan, Ivana / Kuyper, Thomas W / Lado, Carlos / Læssøe, Thomas / Lainé, Patrice / Langer, Ewald / Larsson, Ellen / Larsson, Karl-Henrik / Laursen, Gary / Lechat, Christian / Lee, Serena / Lendemer, James C / Levin, Laura / Lindemann, Uwe / Lindström, Håkan / Liu, Xingzhong / Hernandez, Regulo Carlos Llarena / Llop, Esteve / Locsmándi, Csaba / Lodge, Deborah Jean / Loizides, Michael / Lőkös, László / Luangsa-Ard, Jennifer / Lüderitz, Matthias / Lumbsch, Thorsten / Lutz, Matthias / Mahoney, Dan / Malysheva, Ekaterina / Malysheva, Vera / Manimohan, Patinjareveettil / Marin-Felix, Yasmina / Marques, Guilhermina / Martínez-Gil, Rubén / Marson, Guy / Mata, Gerardo / Matheny, P Brandon / Mathiassen, Geir Harald / Matočec, Neven / Mayrhofer, Helmut / Mehrabi, Mehdi / Melo, Ireneia / Mešić, Armin / Methven, Andrew S / Miettinen, Otto / Romero, Ana M Millanes / Miller, Andrew N / Mitchell, James K / Moberg, Roland / Moreau, Pierre-Arthur / Moreno, Gabriel / Morozova, Olga / Morte, Asunción / Muggia, Lucia / González, Guillermo Muñoz / Myllys, Leena / Nagy, István / Nagy, László G / Neves, Maria Alice / Niemelä, Tuomo / Nimis, Pier Luigi / Niveiro, Nicolas / Noordeloos, Machiel E / Nordin, Anders / Noumeur, Sara Raouia / Novozhilov, Yuri / Nuytinck, Jorinde / Ohenoja, Esteri / Fiuza, Patricia Oliveira / Orange, Alan / Ordynets, Alexander / Ortiz-Santana, Beatriz / Pacheco, Leticia / Pál-Fám, Ferenc / Palacio, Melissa / Palice, Zdeněk / Papp, Viktor / Pärtel, Kadri / Pawlowska, Julia / Paz, Aurelia / Peintner, Ursula / Pennycook, Shaun / Pereira, Olinto Liparini / Daniëls, Pablo Pérez / Pérez-De-Gregorio Capella, Miquel À / Del Amo, Carlos Manuel Pérez / Gorjón, Sergio Pérez / Pérez-Ortega, Sergio / Pérez-Vargas, Israel / Perry, Brian A / Petersen, Jens H / Petersen, Ronald H / Pfister, Donald H / Phukhamsakda, Chayanard / Piątek, Marcin / Piepenbring, Meike / Pino-Bodas, Raquel / Esquivel, Juan Pablo Pinzón / Pirot, Paul / Popov, Eugene S / Popoff, Orlando / Álvaro, María Prieto / Printzen, Christian / Psurtseva, Nadezhda / Purahong, Witoon / Quijada, Luis / Rambold, Gerhard / Ramírez, Natalia A / Raja, Huzefa / Raspé, Olivier / Raymundo, Tania / Réblová, Martina / Rebriev, Yury A / de Dios Reyes García, Juan / Ripoll, Miguel Ángel Ribes / Richard, Franck / Richardson, Mike J / Rico, Víctor J / Robledo, Gerardo Lucio / Barbosa, Flavia Rodrigues / Rodriguez-Caycedo, Cristina / Rodriguez-Flakus, Pamela / Ronikier, Anna / Casas, Luis Rubio / Rusevska, Katerina / Saar, Günter / Saar, Irja / Salcedo, Isabel / Martínez, Sergio M Salcedo / Montoya, Carlos A Salvador / Sánchez-Ramírez, Santiago / Sandoval-Sierra, J Vladimir / Santamaria, Sergi / Monteiro, Josiane Santana / Schroers, Hans Josef / Schulz, Barbara / Schmidt-Stohn, Geert / Schumacher, Trond / Senn-Irlet, Beatrice / Ševčíková, Hana / Shchepin, Oleg / Shirouzu, Takashi / Shiryaev, Anton / Siepe, Klaus / Sir, Esteban B / Sohrabi, Mohammad / Soop, Karl / Spirin, Viacheslav / Spribille, Toby / Stadler, Marc / Stalpers, Joost / Stenroos, Soili / Suija, Ave / Sunhede, Stellan / Svantesson, Sten / Svensson, Sigvard / Svetasheva, Tatyana Yu / Świerkosz, Krzysztof / Tamm, Heidi / Taskin, Hatira / Taudière, Adrien / Tedebrand, Jan-Olof / Lahoz, Raúl Tena / Temina, Marina / Thell, Arne / Thines, Marco / Thor, Göran / Thüs, Holger / Tibell, Leif / Tibell, Sanja / Timdal, Einar / Tkalčec, Zdenko / Tønsberg, Tor / Trichies, Gérard / Triebel, Dagmar / Tsurykau, Andrei / Tulloss, Rodham E / Tuovinen, Veera / Sosa, Miguel Ulloa / Urcelay, Carlos / Valade, François / Garza, Ricardo Valenzuela / van den Boom, Pieter / Van Vooren, Nicolas / Vasco-Palacios, Aida M / Vauras, Jukka / Velasco Santos, Juan Manuel / Vellinga, Else / Verbeken, Annemieke / Vetlesen, Per / Vizzini, Alfredo / Voglmayr, Hermann / Volobuev, Sergey / von Brackel, Wolfgang / Voronina, Elena / Walther, Grit / Watling, Roy / Weber, Evi / Wedin, Mats / Weholt, Øyvind / Westberg, Martin / Yurchenko, Eugene / Zehnálek, Petr / Zhang, Huang / Zhurbenko, Mikhail P / Ekman, Stefan

    IMA fungus

    2018  

    Abstract: Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological ... ...

    Abstract Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological diversity) with nomenclature (an artificial agreement to name biological diversity). Two proposals to amend the International Code of Nomenclature for algae, fungi, and plants (ICN), allowing DNA sequences alone (of any region and extent) to serve as types of taxon names for voucherless fungi (mainly putative taxa from environmental DNA sequences), have been submitted to be voted on at the 11th International Mycological Congress (Puerto Rico, July 2018). We consider various genetic processes affecting the distribution of alleles among taxa and find that alleles may not consistently and uniquely represent the species within which they are contained. Should the proposals be accepted, the meaning of nomenclatural types would change in a fundamental way from physical objects as sources of data to the data themselves. Such changes are conducive to irreproducible science, the potential typification on artefactual data, and massive creation of names with low information content, ultimately causing nomenclatural instability and unnecessary work for future researchers that would stall future explorations of fungal diversity. We conclude that the acceptance of DNA sequences alone as types of names of taxa, under the terms used in the current proposals, is unnecessary and would not solve the problem of naming putative taxa known only from DNA sequences in a scientifically defensible way. As an alternative, we highlight the use of formulas for naming putative taxa (candidate taxa) that do not require any modification of the ICN.
    Keywords IMC11 ; nomenclature ; speciation ; taxonomy ; typification ; voucherless fungi
    Subject code 612
    Publishing date 2018-06-01
    Publishing country de
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  5. Article ; Online: Considerations and consequences of allowing DNA sequence data as types of fungal taxa.

    Zamora, Juan Carlos / Svensson, Måns / Kirschner, Roland / Olariaga, Ibai / Ryman, Svengunnar / Parra, Luis Alberto / Geml, József / Rosling, Anna / Adamčík, Slavomír / Ahti, Teuvo / Aime, M Catherine / Ainsworth, A Martyn / Albert, László / Albertó, Edgardo / García, Alberto Altés / Ageev, Dmitry / Agerer, Reinhard / Aguirre-Hudson, Begoña / Ammirati, Joe /
    Andersson, Harry / Angelini, Claudio / Antonín, Vladimír / Aoki, Takayuki / Aptroot, André / Argaud, Didier / Sosa, Blanca Imelda Arguello / Aronsen, Arne / Arup, Ulf / Asgari, Bita / Assyov, Boris / Atienza, Violeta / Bandini, Ditte / Baptista-Ferreira, João Luís / Baral, Hans-Otto / Baroni, Tim / Barreto, Robert Weingart / Beker, Henry / Bell, Ann / Bellanger, Jean-Michel / Bellù, Francesco / Bemmann, Martin / Bendiksby, Mika / Bendiksen, Egil / Bendiksen, Katriina / Benedek, Lajos / Bérešová-Guttová, Anna / Berger, Franz / Berndt, Reinhard / Bernicchia, Annarosa / Biketova, Alona Yu / Bizio, Enrico / Bjork, Curtis / Boekhout, Teun / Boertmann, David / Böhning, Tanja / Boittin, Florent / Boluda, Carlos G / Boomsluiter, Menno W / Borovička, Jan / Brandrud, Tor Erik / Braun, Uwe / Brodo, Irwin / Bulyonkova, Tatiana / Burdsall, Harold H / Buyck, Bart / Burgaz, Ana Rosa / Calatayud, Vicent / Callac, Philippe / Campo, Emanuele / Candusso, Massimo / Capoen, Brigitte / Carbó, Joaquim / Carbone, Matteo / Castañeda-Ruiz, Rafael F / Castellano, Michael A / Chen, Jie / Clerc, Philippe / Consiglio, Giovanni / Corriol, Gilles / Courtecuisse, Régis / Crespo, Ana / Cripps, Cathy / Crous, Pedro W / da Silva, Gladstone Alves / da Silva, Meiriele / Dam, Marjo / Dam, Nico / Dämmrich, Frank / Das, Kanad / Davies, Linda / De Crop, Eske / De Kesel, Andre / De Lange, Ruben / De Madrignac Bonzi, Bárbara / Dela Cruz, Thomas Edison E / Delgat, Lynn / Demoulin, Vincent / Desjardin, Dennis E / Diederich, Paul / Dima, Bálint / Dios, Maria Martha / Divakar, Pradeep Kumar / Douanla-Meli, Clovis / Douglas, Brian / Drechsler-Santos, Elisandro Ricardo / Dyer, Paul S / Eberhardt, Ursula / Ertz, Damien / Esteve-Raventós, Fernando / Salazar, Javier Angel Etayo / Evenson, Vera / Eyssartier, Guillaume / Farkas, Edit / Favre, Alain / Fedosova, Anna G / Filippa, Mario / Finy, Péter / Flakus, Adam / Fos, Simón / Fournier, Jacques / Fraiture, André / Franchi, Paolo / Molano, Ana Esperanza Franco / Friebes, Gernot / Frisch, Andreas / Fryday, Alan / Furci, Giuliana / Márquez, Ricardo Galán / Garbelotto, Matteo / García-Martín, Joaquina María / Otálora, Mónica A García / Sánchez, Dania García / Gardiennet, Alain / Garnica, Sigisfredo / Benavent, Isaac Garrido / Gates, Genevieve / da Cruz Lima Gerlach, Alice / Ghobad-Nejhad, Masoomeh / Gibertoni, Tatiana B / Grebenc, Tine / Greilhuber, Irmgard / Grishkan, Bella / Groenewald, Johannes Z / Grube, Martin / Gruhn, Gérald / Gueidan, Cécile / Gulden, Gro / Gusmão, Luis Fp / Hafellner, Josef / Hairaud, Michel / Halama, Marek / Hallenberg, Nils / Halling, Roy E / Hansen, Karen / Harder, Christoffer Bugge / Heilmann-Clausen, Jacob / Helleman, Stip / Henriot, Alain / Hernandez-Restrepo, Margarita / Herve, Raphaël / Hobart, Caroline / Hoffmeister, Mascha / Høiland, Klaus / Holec, Jan / Holien, Håkon / Hughes, Karen / Hubka, Vit / Huhtinen, Seppo / Ivančević, Boris / Jagers, Marian / Jaklitsch, Walter / Jansen, AnnaElise / Jayawardena, Ruvishika S / Jeppesen, Thomas Stjernegaard / Jeppson, Mikael / Johnston, Peter / Jørgensen, Per Magnus / Kärnefelt, Ingvar / Kalinina, Liudmila B / Kantvilas, Gintaras / Karadelev, Mitko / Kasuya, Taiga / Kautmanová, Ivona / Kerrigan, Richard W / Kirchmair, Martin / Kiyashko, Anna / Knapp, Dániel G / Knudsen, Henning / Knudsen, Kerry / Knutsson, Tommy / Kolařík, Miroslav / Kõljalg, Urmas / Košuthová, Alica / Koszka, Attila / Kotiranta, Heikki / Kotkova, Vera / Koukol, Ondřej / Kout, Jiří / Kovács, Gábor M / Kříž, Martin / Kruys, Åsa / Kučera, Viktor / Kudzma, Linas / Kuhar, Francisco / Kukwa, Martin / Arun Kumar, T K / Kunca, Vladimír / Kušan, Ivana / Kuyper, Thomas W / Lado, Carlos / Læssøe, Thomas / Lainé, Patrice / Langer, Ewald / Larsson, Ellen / Larsson, Karl-Henrik / Laursen, Gary / Lechat, Christian / Lee, Serena / Lendemer, James C / Levin, Laura / Lindemann, Uwe / Lindström, Håkan / Liu, Xingzhong / Hernandez, Regulo Carlos Llarena / Llop, Esteve / Locsmándi, Csaba / Lodge, Deborah Jean / Loizides, Michael / Lőkös, László / Luangsa-Ard, Jennifer / Lüderitz, Matthias / Lumbsch, Thorsten / Lutz, Matthias / Mahoney, Dan / Malysheva, Ekaterina / Malysheva, Vera / Manimohan, Patinjareveettil / Marin-Felix, Yasmina / Marques, Guilhermina / Martínez-Gil, Rubén / Marson, Guy / Mata, Gerardo / Matheny, P Brandon / Mathiassen, Geir Harald / Matočec, Neven / Mayrhofer, Helmut / Mehrabi, Mehdi / Melo, Ireneia / Mešić, Armin / Methven, Andrew S / Miettinen, Otto / Romero, Ana M Millanes / Miller, Andrew N / Mitchell, James K / Moberg, Roland / Moreau, Pierre-Arthur / Moreno, Gabriel / Morozova, Olga / Morte, Asunción / Muggia, Lucia / González, Guillermo Muñoz / Myllys, Leena / Nagy, István / Nagy, László G / Neves, Maria Alice / Niemelä, Tuomo / Nimis, Pier Luigi / Niveiro, Nicolas / Noordeloos, Machiel E / Nordin, Anders / Noumeur, Sara Raouia / Novozhilov, Yuri / Nuytinck, Jorinde / Ohenoja, Esteri / Fiuza, Patricia Oliveira / Orange, Alan / Ordynets, Alexander / Ortiz-Santana, Beatriz / Pacheco, Leticia / Pál-Fám, Ferenc / Palacio, Melissa / Palice, Zdeněk / Papp, Viktor / Pärtel, Kadri / Pawlowska, Julia / Paz, Aurelia / Peintner, Ursula / Pennycook, Shaun / Pereira, Olinto Liparini / Daniëls, Pablo Pérez / Pérez-De-Gregorio Capella, Miquel À / Del Amo, Carlos Manuel Pérez / Gorjón, Sergio Pérez / Pérez-Ortega, Sergio / Pérez-Vargas, Israel / Perry, Brian A / Petersen, Jens H / Petersen, Ronald H / Pfister, Donald H / Phukhamsakda, Chayanard / Piątek, Marcin / Piepenbring, Meike / Pino-Bodas, Raquel / Esquivel, Juan Pablo Pinzón / Pirot, Paul / Popov, Eugene S / Popoff, Orlando / Álvaro, María Prieto / Printzen, Christian / Psurtseva, Nadezhda / Purahong, Witoon / Quijada, Luis / Rambold, Gerhard / Ramírez, Natalia A / Raja, Huzefa / Raspé, Olivier / Raymundo, Tania / Réblová, Martina / Rebriev, Yury A / de Dios Reyes García, Juan / Ripoll, Miguel Ángel Ribes / Richard, Franck / Richardson, Mike J / Rico, Víctor J / Robledo, Gerardo Lucio / Barbosa, Flavia Rodrigues / Rodriguez-Caycedo, Cristina / Rodriguez-Flakus, Pamela / Ronikier, Anna / Casas, Luis Rubio / Rusevska, Katerina / Saar, Günter / Saar, Irja / Salcedo, Isabel / Martínez, Sergio M Salcedo / Montoya, Carlos A Salvador / Sánchez-Ramírez, Santiago / Sandoval-Sierra, J Vladimir / Santamaria, Sergi / Monteiro, Josiane Santana / Schroers, Hans Josef / Schulz, Barbara / Schmidt-Stohn, Geert / Schumacher, Trond / Senn-Irlet, Beatrice / Ševčíková, Hana / Shchepin, Oleg / Shirouzu, Takashi / Shiryaev, Anton / Siepe, Klaus / Sir, Esteban B / Sohrabi, Mohammad / Soop, Karl / Spirin, Viacheslav / Spribille, Toby / Stadler, Marc / Stalpers, Joost / Stenroos, Soili / Suija, Ave / Sunhede, Stellan / Svantesson, Sten / Svensson, Sigvard / Svetasheva, Tatyana Yu / Świerkosz, Krzysztof / Tamm, Heidi / Taskin, Hatira / Taudière, Adrien / Tedebrand, Jan-Olof / Lahoz, Raúl Tena / Temina, Marina / Thell, Arne / Thines, Marco / Thor, Göran / Thüs, Holger / Tibell, Leif / Tibell, Sanja / Timdal, Einar / Tkalčec, Zdenko / Tønsberg, Tor / Trichies, Gérard / Triebel, Dagmar / Tsurykau, Andrei / Tulloss, Rodham E / Tuovinen, Veera / Sosa, Miguel Ulloa / Urcelay, Carlos / Valade, François / Garza, Ricardo Valenzuela / van den Boom, Pieter / Van Vooren, Nicolas / Vasco-Palacios, Aida M / Vauras, Jukka / Velasco Santos, Juan Manuel / Vellinga, Else / Verbeken, Annemieke / Vetlesen, Per / Vizzini, Alfredo / Voglmayr, Hermann / Volobuev, Sergey / von Brackel, Wolfgang / Voronina, Elena / Walther, Grit / Watling, Roy / Weber, Evi / Wedin, Mats / Weholt, Øyvind / Westberg, Martin / Yurchenko, Eugene / Zehnálek, Petr / Zhang, Huang / Zhurbenko, Mikhail P / Ekman, Stefan

    IMA fungus

    2018  

    Abstract: Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological ... ...

    Abstract Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological diversity) with nomenclature (an artificial agreement to name biological diversity). Two proposals to amend the International Code of Nomenclature for algae, fungi, and plants (ICN), allowing DNA sequences alone (of any region and extent) to serve as types of taxon names for voucherless fungi (mainly putative taxa from environmental DNA sequences), have been submitted to be voted on at the 11th International Mycological Congress (Puerto Rico, July 2018). We consider various genetic processes affecting the distribution of alleles among taxa and find that alleles may not consistently and uniquely represent the species within which they are contained. Should the proposals be accepted, the meaning of nomenclatural types would change in a fundamental way from physical objects as sources of data to the data themselves. Such changes are conducive to irreproducible science, the potential typification on artefactual data, and massive creation of names with low information content, ultimately causing nomenclatural instability and unnecessary work for future researchers that would stall future explorations of fungal diversity. We conclude that the acceptance of DNA sequences alone as types of names of taxa, under the terms used in the current proposals, is unnecessary and would not solve the problem of naming putative taxa known only from DNA sequences in a scientifically defensible way. As an alternative, we highlight the use of formulas for naming putative taxa (candidate taxa) that do not require any modification of the ICN.
    Keywords IMC11 ; nomenclature ; speciation ; taxonomy ; typification ; voucherless fungi
    Subject code 612
    Publishing date 2018-06-01
    Publishing country de
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

    More links

    Kategorien

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