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  1. Article ; Online: Structural modulation of insulin by hydrophobic and hydrophilic molecules.

    Begum, Shahnaz / Parvej, Hasan / Dalui, Ramkrishna / Paul, Swarnali / Maity, Sanhita / Sepay, Nayim / Afzal, Mohd / Chandra Halder, Umesh

    RSC advances

    2023  Volume 13, Issue 48, Page(s) 34097–34106

    Abstract: In the bloodstream, insulin interacts with various kinds of molecules, which can alter its structure and modulate its function. In this work, we have synthesized two molecules having extremely hydrophilic and hydrophobic side chains. The effects of ... ...

    Abstract In the bloodstream, insulin interacts with various kinds of molecules, which can alter its structure and modulate its function. In this work, we have synthesized two molecules having extremely hydrophilic and hydrophobic side chains. The effects of hydrophilic and hydrophobic molecules on the binding with insulin have been investigated through a multi-spectroscopic approach. We found that hydrophilic molecules have a slightly higher binding affinity towards insulin. Insulin can bind with the hydrophilic molecules as it binds glucose. The high insulin binding affinity of a hydrophobic molecule indicates its dual nature. The hydrophobic molecule binds at the hydrophobic pocket of the insulin surface, where hydrophilic molecules interact at the polar surface of the insulin. Such binding with the hydrophobic molecule perturbs strongly the secondary structure of the insulin much more in comparison to hydrophilic molecules. Therefore, the stability of insulin decreases in the presence of hydrophobic molecules.
    Language English
    Publishing date 2023-11-21
    Publishing country England
    Document type Journal Article
    ISSN 2046-2069
    ISSN (online) 2046-2069
    DOI 10.1039/d3ra06647a
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Correction: Coumarin derivatives inhibit the aggregation of β-lactoglobulin.

    Parvej, Hasan / Begum, Shahnaz / Dalui, Ramkrishna / Paul, Swarnali / Mandal, Barun / Sardar, Subrata / Sepay, Nayim / Maiti, Gourhari / Chandra Halder, Umesh

    RSC advances

    2022  Volume 12, Issue 30, Page(s) 19054

    Abstract: This corrects the article DOI: 10.1039/D2RA01029A.]. ...

    Abstract [This corrects the article DOI: 10.1039/D2RA01029A.].
    Language English
    Publishing date 2022-06-29
    Publishing country England
    Document type Published Erratum
    ISSN 2046-2069
    ISSN (online) 2046-2069
    DOI 10.1039/d2ra90064e
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Coumarin derivatives inhibit the aggregation of β-lactoglobulin.

    Parvej, Hasan / Begum, Shahnaz / Dalui, Ramkrishna / Paul, Swarnali / Mondal, Barun / Sardar, Subrata / Sepay, Nayim / Maiti, Gourhari / Halder, Umesh Chandra

    RSC advances

    2022  Volume 12, Issue 27, Page(s) 17020–17028

    Abstract: The binding of a small molecule to a protein through non-covalent interactions mainly depends on its size and electronic environment. Such binding can change the stability of the three dimensional protein structure which sometimes may destabilize it to ... ...

    Abstract The binding of a small molecule to a protein through non-covalent interactions mainly depends on its size and electronic environment. Such binding can change the stability of the three dimensional protein structure which sometimes may destabilize it to accelerate or to inhibit protein aggregation. Coumarin is a widely used fluorescent dye with several biological applications. Different substituents (electron-donating and electron-withdrawing) at different positions of the coumarin moiety can influence its molecular volume, physical and chemical properties. Here we investigate the effect of such substituents of coumarin on the aggregation of a model protein, beta-lactoglobulin (β-lg) through a multi spectroscopic approach. It was observed that coumarin methyl ester with an 8-hydroxyl group can inhibit the β-lg aggregation. This compound can bind the hydrophobic site of beta-lactoglobulin and stabilize a particular protein conformation through the formation of hydrogen bond and hydrophobic interactions. Thus a properly designed compound can inhibit protein-protein interactions through protein-small molecule interactions. Other coumarinoid compounds also are effective in the prevention of thermal aggregation of β-lg.
    Language English
    Publishing date 2022-06-08
    Publishing country England
    Document type Journal Article
    ISSN 2046-2069
    ISSN (online) 2046-2069
    DOI 10.1039/d2ra01029a
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Coumarin derivatives inhibit the aggregation of β-lactoglobulin

    Parvej, Hasan / Begum, Shahnaz / Dalui, Ramkrishna / Paul, Swarnali / Mondal, Barun / Sardar, Subrata / Sepay, Nayim / Maiti, Gourhari / Halder, Umesh Chandra

    RSC advances. 2022 June 08, v. 12, no. 27

    2022  

    Abstract: The binding of a small molecule to a protein through non-covalent interactions mainly depends on its size and electronic environment. Such binding can change the stability of the three dimensional protein structure which sometimes may destabilize it to ... ...

    Abstract The binding of a small molecule to a protein through non-covalent interactions mainly depends on its size and electronic environment. Such binding can change the stability of the three dimensional protein structure which sometimes may destabilize it to accelerate or to inhibit protein aggregation. Coumarin is a widely used fluorescent dye with several biological applications. Different substituents (electron-donating and electron-withdrawing) at different positions of the coumarin moiety can influence its molecular volume, physical and chemical properties. Here we investigate the effect of such substituents of coumarin on the aggregation of a model protein, beta-lactoglobulin (β-lg) through a multi spectroscopic approach. It was observed that coumarin methyl ester with an 8-hydroxyl group can inhibit the β-lg aggregation. This compound can bind the hydrophobic site of beta-lactoglobulin and stabilize a particular protein conformation through the formation of hydrogen bond and hydrophobic interactions. Thus a properly designed compound can inhibit protein–protein interactions through protein–small molecule interactions. Other coumarinoid compounds also are effective in the prevention of thermal aggregation of β-lg.
    Keywords beta-lactoglobulin ; coumarin ; fluorescent dyes ; hydrogen bonding ; hydrophobicity ; moieties ; protein conformation ; spectroscopy
    Language English
    Dates of publication 2022-0608
    Size p. 17020-17028.
    Publishing place The Royal Society of Chemistry
    Document type Article
    ISSN 2046-2069
    DOI 10.1039/d2ra01029a
    Database NAL-Catalogue (AGRICOLA)

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  5. Article ; Online: Modulation of amyloid fibrillation of bovine β-lactoglobulin by selective methionine oxidation.

    Maity, Sanhita / Sepay, Nayim / Pal, Sampa / Sardar, Subrata / Parvej, Hasan / Pal, Swarnali / Chakraborty, Jishnu / Pradhan, Anirban / Halder, Umesh Chandra

    RSC advances

    2021  Volume 11, Issue 19, Page(s) 11192–11203

    Abstract: Deposition of oxidation-modified proteins during normal aging and oxidative stress are directly associated with systemic amyloidoses. Methionine (Met) is believed to be one of the most readily oxidisable amino acid residues of protein. Bovine beta- ... ...

    Abstract Deposition of oxidation-modified proteins during normal aging and oxidative stress are directly associated with systemic amyloidoses. Methionine (Met) is believed to be one of the most readily oxidisable amino acid residues of protein. Bovine beta-lactoglobulin (β-lg), a model globular whey protein, has been presented as a subsequent paradigm for studies on protein aggregation and amyloid formation. Herein, we investigated the effect of
    Language English
    Publishing date 2021-03-17
    Publishing country England
    Document type Journal Article
    ISSN 2046-2069
    ISSN (online) 2046-2069
    DOI 10.1039/d0ra09060c
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article: New insight into the alcohol induced conformational change and aggregation of the alkaline unfolded state of bovine β-lactoglobulin

    Maity, Sanhita / Sardar, Subrata / Pal, Sampa / Parvej, Hasan / Chakraborty, Jishnu / Halder, Umesh Ch

    RSC advances. 2016 Aug. 05, v. 6, no. 78

    2016  

    Abstract: Accumulation of ordered protein aggregates (or amyloids) is responsible for several neurodegenerative diseases. β-Lactoglobulin (β-lg) an important globular milk protein, self-assembles to form amyloid-like fibrils on heating at low pH. But here we ... ...

    Abstract Accumulation of ordered protein aggregates (or amyloids) is responsible for several neurodegenerative diseases. β-Lactoglobulin (β-lg) an important globular milk protein, self-assembles to form amyloid-like fibrils on heating at low pH. But here we report for first time the self-assembly of β-lg from its alkaline unfolded state. The present work describes the folding and self-assembly of β-lg from a reversible unfolded state at pH 10.5 in the presence of methanol, 2-propanol, t-butanol and 2,2,2-trifluoroethanol (TFE). The extent of secondary and tertiary structure formation is in the order methanol < 2-propanol < t-butanol < TFE. Exposure of the hydrophobic core of the protein molecules in an apolar environment of TFE seems to promote intermolecular cluster formation. Methanol and TFE induce aggregation through the α-helical structure whereas isopropanol and t-butanol favour the formation of the β-structure leading to aggregation at higher concentrations. In vitro aggregation generates various nanometer structures such as nanofibrils, nanovesicles and nanotubes depending on the nature and concentration of the alcohols.
    Keywords amyloid ; beta-lactoglobulin ; cattle ; hydrophobicity ; isopropyl alcohol ; methanol ; nanofibers ; nanotubes ; neurodegenerative diseases ; pH ; protein aggregates
    Language English
    Dates of publication 2016-0805
    Size p. 74409-74417.
    Publishing place The Royal Society of Chemistry
    Document type Article
    ISSN 2046-2069
    DOI 10.1039/c6ra12057a
    Database NAL-Catalogue (AGRICOLA)

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  7. Article ; Online: Silver nanoparticle modulates the aggregation of beta-lactoglobulin and induces to form rod-like aggregates.

    Sardar, Subrata / Anas, Md / Maity, Sanhita / Pal, Sampa / Parvej, Hasan / Begum, Shahnaz / Dalui, Ramkrishna / Sepay, Nayim / Halder, Umesh Chandra

    International journal of biological macromolecules

    2018  Volume 125, Page(s) 596–604

    Abstract: Silver nanoparticles (SNPs) have been increasingly used in medicines and biomaterials as a drug carriers and diagnostic or therapeutic material due to their smaller size, large surface area and cell penetration ability. Here we report the preparation of ... ...

    Abstract Silver nanoparticles (SNPs) have been increasingly used in medicines and biomaterials as a drug carriers and diagnostic or therapeutic material due to their smaller size, large surface area and cell penetration ability. Here we report the preparation of SNPs of diameter 10 ± 3 nm by using silver nitrate and sodium borohydride and the interaction of synthesized SNPs with our model protein β-lactoglobulin (β-lg) in 10 mM phosphate buffer at pH 7.5 after thermal exposure at 75 °C. Heat exposed β-lg forms amyloidal fibrillar aggregates whereas this protein aggregates adopt rod-like shape instead of fibrillar structure in presence of SNP under the same conditions. Size of the synthesized SNPs is confirmed by UV-Visible spectroscopy, SEM and TEM. Interactions and subsequent formation of molecular assembly of heat stressed β-lg with SNP were investigated using Th-T assay and ANS binding assay, DLS, RLS, CD, FT-IR, SEM, TEM. Docking study parallely also support the experimental findings.
    MeSH term(s) Amyloid/metabolism ; Hot Temperature ; Hydrophobic and Hydrophilic Interactions ; Lactoglobulins/metabolism ; Metal Nanoparticles/administration & dosage ; Polymorphism, Single Nucleotide/physiology ; Protein Aggregates/drug effects ; Silver/administration & dosage
    Chemical Substances Amyloid ; Lactoglobulins ; Protein Aggregates ; Silver (3M4G523W1G)
    Language English
    Publishing date 2018-12-07
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 282732-3
    ISSN 1879-0003 ; 0141-8130
    ISSN (online) 1879-0003
    ISSN 0141-8130
    DOI 10.1016/j.ijbiomac.2018.12.039
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article: Multispectroscopic analysis and molecular modeling to investigate the binding of beta lactoglobulin with curcumin derivatives

    Maity, Sanhita / Pal, Sampa / Sardar, Subrata / Sepay, Nayim / Parvej, Hasan / Chakraborty, Jishnu / Chandra Halder, Umesh

    RSC advances. 2016 Nov. 28, v. 6, no. 113

    2016  

    Abstract: Bovine beta lactoglobulin (β-lg), the major whey protein, has a great affinity for a wide range of organic compounds like fatty acids, retinol etc. Curcumin, a polyphenolic antioxidant present in turmeric and its isoxazole (IOC) and pyrazole (PY) ... ...

    Abstract Bovine beta lactoglobulin (β-lg), the major whey protein, has a great affinity for a wide range of organic compounds like fatty acids, retinol etc. Curcumin, a polyphenolic antioxidant present in turmeric and its isoxazole (IOC) and pyrazole (PY) derivatives have been elicited worldwide for their therapeutic activities. However, the nature of interaction of β-lg with these derivatives remains unexplored. Fluorescence quenching studies suggest a static quenching mechanism for both the compounds. The average distances of 7.28 nm and 7.33 nm have been determined for IOC and PY respectively for energy transfer based on FRET which have application in many biological and biophysical fields. Circular dichroism spectra (CD) and Fourier transform infrared spectroscopy (FTIR) have been utilized to analyze the influence on the secondary structure of the protein. Docking simulation reveals a possible mechanism for different quenching behaviours and modes of binding preferred by the two compounds. Our findings will be helpful in the design of the drugs and other biologically active molecules that bind more strongly to β-lg and have the ability to show FRET.
    Keywords Fourier transform infrared spectroscopy ; antioxidants ; circular dichroism spectroscopy ; curcumin ; drugs ; energy transfer ; fatty acids ; fluorescence ; molecular models ; therapeutics ; turmeric ; vitamin A ; whey protein
    Language English
    Dates of publication 2016-1128
    Size p. 112175-112183.
    Publishing place The Royal Society of Chemistry
    Document type Article
    ISSN 2046-2069
    DOI 10.1039/c6ra24275h
    Database NAL-Catalogue (AGRICOLA)

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  9. Article: Facile synthesis and characterization of beta lactoglobulin–copper nanocomposites having antibacterial applications

    sardar, Subrata / Maity, Sanhita / Pal, Sampa / Parvej, Hasan / Das, Niloy / Sepay, Nayim / Sarkar, Manas / Halder, Umesh Chandra

    RSC advances. 2016 Sept. 09, v. 6, no. 88

    2016  

    Abstract: The synthesis of Cu0 nanoparticles and Cu–protein nanocomposites is a great challenge. Here we describe a simple and convenient method for the synthesis of Cu–β-lactoglobulin nanocomposites using very cheap CuSO4·5H2O and the retinol binding model ... ...

    Abstract The synthesis of Cu0 nanoparticles and Cu–protein nanocomposites is a great challenge. Here we describe a simple and convenient method for the synthesis of Cu–β-lactoglobulin nanocomposites using very cheap CuSO4·5H2O and the retinol binding model protein bovine β-lactoglobulin (β-lg) at pH 10.0 in ammoniacal medium. Then addition of hydrazine hydrates in the reaction mixture and heating the solution at 55 °C for 2 h resulted in the formation of hexagonal Cu–β-lg nanocomposite (average size 0.5 μm) containing the embedded Cu-nanoparticles as revealed from SEM and TEM analysis. The important feature of this method is that the highly stable Cu-nanoparticle present in the composites were synthesized without employing any inert atmosphere; decomposition of hydrazine hydrate generated the nitrogen in situ which produced the inert atmosphere for this reaction. Synthesis of this nanocomposite is justified by a docking study. The synthesized nanocomposite exhibits potential antibacterial activity against both Gram positive and Gram negative bacterial strains. Thus it can be employed in different medical applications and also in the preparation of various nanomedicines.
    Keywords Gram-negative bacteria ; antibacterial properties ; beta-lactoglobulin ; copper nanoparticles ; copper sulfate ; hydrazine ; models ; nanocomposites ; nanomedicine ; nitrogen ; pH ; scanning electron microscopy ; transmission electron microscopy ; vitamin A
    Language English
    Dates of publication 2016-0909
    Size p. 85340-85346.
    Publishing place The Royal Society of Chemistry
    Document type Article
    ISSN 2046-2069
    DOI 10.1039/c6ra14162e
    Database NAL-Catalogue (AGRICOLA)

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  10. Article: Curcumin inhibits the Al(iii) and Zn(ii) induced amyloid fibrillation of β-lactoglobulin in vitro

    Pal, Sampa / Maity, Sanhita / Sardar, Subrata / Parvej, Hasan / Das, Niloy / Chakraborty, Jishnu / Chandra Halder, Umesh

    RSC advances. 2016 Nov. 23, v. 6, no. 112

    2016  

    Abstract: Accumulation of ordered protein aggregates (or amyloids) is responsible for several neurodegenerative diseases. The behaviour of amyloidal fibril formation of β-lactoglobulin (β-lg) during heat treatment depends on the environmental conditions. In this ... ...

    Abstract Accumulation of ordered protein aggregates (or amyloids) is responsible for several neurodegenerative diseases. The behaviour of amyloidal fibril formation of β-lactoglobulin (β-lg) during heat treatment depends on the environmental conditions. In this study the Al(iii) and Zn(ii) induced amyloid fibrillations of β-lg, in the absence and presence of curcumin, were evaluated using fluorescence, Thioflavin T, Congo red, Rayleigh scattering, dynamic light scattering analysis, FT-IR, CD spectroscopy and transmission electron microscopy. Curcumin, a natural phenolic antioxidant, is capable of binding with Al3+, Zn2+ and β-lg. Our experimental findings demonstrate that the metal–curcumin mixture can inhibit the transition from less structured oligomers to β-sheet rich protofibrils which act as seeding factors for further fibrillization. The Al(iii)–curcumin mixture has greater inhibition capability than the Zn(ii)–curcumin mixture of heat treated metal induced aggregation of β-lg.
    Keywords Fourier transform infrared spectroscopy ; aluminum ; amyloid ; antioxidants ; beta-lactoglobulin ; circular dichroism spectroscopy ; curcumin ; environmental factors ; fluorescence ; heat treatment ; light scattering ; neurodegenerative diseases ; protein aggregates ; transmission electron microscopy ; zinc
    Language English
    Dates of publication 2016-1123
    Size p. 111299-111307.
    Publishing place The Royal Society of Chemistry
    Document type Article
    ISSN 2046-2069
    DOI 10.1039/c6ra24570f
    Database NAL-Catalogue (AGRICOLA)

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