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  1. Article ; Online: 3D-Structured Illumination Microscopy of Centrosomes in Human Cell Lines.

    Frikstad, Kari-Anne M / Schink, Kay O / Gilani, Sania / Pedersen, Lotte B / Patzke, Sebastian

    Bio-protocol

    2022  Volume 12, Issue 6, Page(s) e4360

    Abstract: The centrosome is the main microtubule-organizing center of animal cells, and is composed of two barrel-shaped microtubule-based centrioles embedded in protein dense pericentriolar material. Compositional and architectural re-organization of the ... ...

    Abstract The centrosome is the main microtubule-organizing center of animal cells, and is composed of two barrel-shaped microtubule-based centrioles embedded in protein dense pericentriolar material. Compositional and architectural re-organization of the centrosome drives its duplication, and enables its microtubule-organizing activity and capability to form the primary cilium, which extends from the mature (mother) centriole, as the cell exits the cell cycle. Centrosomes and primary cilia are essential to human health, signified by the causal role of centrosome- and cilia-aberrations in numerous congenic disorders, as well as in the etiology and progression of cancer. The list of disease-associated centrosomal proteins and their proximitomes is steadily expanding, emphasizing the need for high resolution mapping of such proteins to specific substructures of the organelle. Here, we provide a detailed 3D-structured illumination microscopy (3D-SIM) protocol for comparative localization analysis of fluorescently labeled proteins at the centrosome in fixed human cell lines, at approximately 120 nm lateral and 300 nm axial resolution. The procedure was optimized to work with primary antibodies previously known to depend on more disruptive fixation reagents, yet largely preserves centriole and centrosome architecture, as shown by transposing acquired images of landmark proteins on previously published transmission electron microscopy (TEM) images of centrosomes. Even more advantageously, it is compatible with fluorescent protein tags. Finally, we introduce an internal reference to ensure correct 3D channel alignment. This protocol hence enables flexible, swift, and information-rich localization and interdependence analyses of centrosomal proteins, as well as their disorder-associated mutations.
    Language English
    Publishing date 2022-03-20
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2833269-6
    ISSN 2331-8325 ; 2331-8325
    ISSN (online) 2331-8325
    ISSN 2331-8325
    DOI 10.21769/BioProtoc.4360
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: CCDC66 regulates primary cilium length and signaling via interactions with transition zone and axonemal proteins.

    Odabasi, Ezgi / Conkar, Deniz / Deretic, Jovana / Batman, Umut / Frikstad, Kari-Anne M / Patzke, Sebastian / Firat-Karalar, Elif Nur

    Journal of cell science

    2023  Volume 136, Issue 3

    Abstract: The primary cilium is a microtubule-based organelle that serves as a hub for many signaling pathways. It functions as part of the centrosome or cilium complex, which also contains the basal body and the centriolar satellites. Little is known about the ... ...

    Abstract The primary cilium is a microtubule-based organelle that serves as a hub for many signaling pathways. It functions as part of the centrosome or cilium complex, which also contains the basal body and the centriolar satellites. Little is known about the mechanisms by which the microtubule-based ciliary axoneme is assembled with a proper length and structure, particularly in terms of the activity of microtubule-associated proteins (MAPs) and the crosstalk between the different compartments of the centrosome or cilium complex. Here, we analyzed CCDC66, a MAP implicated in cilium biogenesis and ciliopathies. Live-cell imaging revealed that CCDC66 compartmentalizes between centrosomes, centriolar satellites, and the ciliary axoneme and tip during cilium biogenesis. CCDC66 depletion in human cells causes defects in cilium assembly, length and morphology. Notably, CCDC66 interacts with the ciliopathy-linked MAPs CEP104 and CSPP1, and regulates axonemal length and Hedgehog pathway activation. Moreover, CCDC66 is required for the basal body recruitment of transition zone proteins and intraflagellar transport B (IFT-B) machinery. Overall, our results establish CCDC66 as a multifaceted regulator of the primary cilium and provide insight into how ciliary MAPs and subcompartments cooperate to ensure assembly of functional cilia.
    MeSH term(s) Humans ; Cilia/metabolism ; Axoneme/metabolism ; Hedgehog Proteins/metabolism ; Microtubule-Associated Proteins/metabolism ; Centrioles/metabolism ; Eye Proteins/metabolism
    Chemical Substances Hedgehog Proteins ; Microtubule-Associated Proteins ; CCDC66 protein, human ; Eye Proteins
    Language English
    Publishing date 2023-02-02
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2993-2
    ISSN 1477-9137 ; 0021-9533
    ISSN (online) 1477-9137
    ISSN 0021-9533
    DOI 10.1242/jcs.260327
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  3. Article ; Online: CSPP1 stabilizes growing microtubule ends and damaged lattices from the luminal side.

    van den Berg, Cyntha M / Volkov, Vladimir A / Schnorrenberg, Sebastian / Huang, Ziqiang / Stecker, Kelly E / Grigoriev, Ilya / Gilani, Sania / Frikstad, Kari-Anne M / Patzke, Sebastian / Zimmermann, Timo / Dogterom, Marileen / Akhmanova, Anna

    The Journal of cell biology

    2023  Volume 222, Issue 4

    Abstract: Microtubules are dynamic cytoskeletal polymers, and their organization and stability are tightly regulated by numerous cellular factors. While regulatory proteins controlling the formation of interphase microtubule arrays and mitotic spindles have been ... ...

    Abstract Microtubules are dynamic cytoskeletal polymers, and their organization and stability are tightly regulated by numerous cellular factors. While regulatory proteins controlling the formation of interphase microtubule arrays and mitotic spindles have been extensively studied, the biochemical mechanisms responsible for generating stable microtubule cores of centrioles and cilia are poorly understood. Here, we used in vitro reconstitution assays to investigate microtubule-stabilizing properties of CSPP1, a centrosome and cilia-associated protein mutated in the neurodevelopmental ciliopathy Joubert syndrome. We found that CSPP1 preferentially binds to polymerizing microtubule ends that grow slowly or undergo growth perturbations and, in this way, resembles microtubule-stabilizing compounds such as taxanes. Fluorescence microscopy and cryo-electron tomography showed that CSPP1 is deposited in the microtubule lumen and inhibits microtubule growth and shortening through two separate domains. CSPP1 also specifically recognizes and stabilizes damaged microtubule lattices. These data help to explain how CSPP1 regulates the elongation and stability of ciliary axonemes and other microtubule-based structures.
    MeSH term(s) Centrioles/metabolism ; Centrosome/metabolism ; Cytoskeleton/metabolism ; Microtubule-Associated Proteins/genetics ; Microtubule-Associated Proteins/metabolism ; Microtubules/genetics ; Microtubules/metabolism ; Cell Cycle Proteins/genetics ; Cell Cycle Proteins/metabolism ; Humans
    Chemical Substances Microtubule-Associated Proteins ; Cell Cycle Proteins ; CSPP1 protein, human
    Language English
    Publishing date 2023-02-08
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 218154-x
    ISSN 1540-8140 ; 0021-9525
    ISSN (online) 1540-8140
    ISSN 0021-9525
    DOI 10.1083/jcb.202208062
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Anti-CD37 radioimmunotherapy with 177Lu-NNV003 synergizes with the PARP inhibitor olaparib in treatment of non-Hodgkin's lymphoma in vitro.

    Malenge, Marion M / Maaland, Astri Fjelde / Repetto-Llamazares, Ada / Middleton, Brian / Nijland, Marcel / Visser, Lydia / Patzke, Sebastian / Heyerdahl, Helen / Kolstad, Arne / Stokke, Trond / Ree, Anne Hansen / Dahle, Jostein

    PloS one

    2022  Volume 17, Issue 4, Page(s) e0267543

    Abstract: Background and purpose: PARP inhibitors have been shown to increase the efficacy of radiotherapy in preclinical models. Radioimmunotherapy results in selective radiation cytotoxicity of targeted tumour cells. Here we investigate the combined effect of ... ...

    Abstract Background and purpose: PARP inhibitors have been shown to increase the efficacy of radiotherapy in preclinical models. Radioimmunotherapy results in selective radiation cytotoxicity of targeted tumour cells. Here we investigate the combined effect of anti-CD37 β-emitting 177Lu-NNV003 radioimmunotherapy and the PARP inhibitor olaparib, and gene expression profiles in CD37 positive non-Hodgkin's lymphoma cell lines.
    Materials and methods: The combined effect of 177Lu-NNV003 and olaparib was studied in seven cell lines using a fixed-ratio ray design, and combination index was calculated for each combination concentration. mRNA was extracted before and after treatment with the drug combination. After RNA-sequencing, hierarchical clustering was performed on basal gene expression profiles and on differentially expressed genes after combination treatment from baseline. Functional gene annotation analysis of significant differentially expressed genes after combination treatment was performed to identify enriched biological processes.
    Results: The combination of olaparib and 177Lu-NNV003 was synergistic in four of seven cell lines, antagonistic in one and both synergistic and antagonistic (conditionally synergistic) in two, depending on the concentration ratio between olaparib and 177Lu-NNV003. Cells treated with the combination significantly overexpressed genes in the TP53 signalling pathway. However, cluster analysis did not identify gene clusters that correlate with the sensitivity of cells to single agent or combination treatment.
    Conclusion: The cytotoxic effect of the combination of the PARP inhibitor olaparib and the β-emitting radioimmunoconjugate 177Lu-NNV003 was synergistic in the majority of tested lymphoma cell lines.
    MeSH term(s) Antineoplastic Agents/pharmacology ; Cell Line, Tumor ; Humans ; Lymphoma, Non-Hodgkin/drug therapy ; Lymphoma, Non-Hodgkin/radiotherapy ; Phthalazines ; Piperazines ; Poly(ADP-ribose) Polymerase Inhibitors/pharmacology ; Poly(ADP-ribose) Polymerase Inhibitors/therapeutic use ; Radioimmunotherapy
    Chemical Substances Antineoplastic Agents ; Phthalazines ; Piperazines ; Poly(ADP-ribose) Polymerase Inhibitors ; olaparib (WOH1JD9AR8)
    Language English
    Publishing date 2022-04-29
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2267670-3
    ISSN 1932-6203 ; 1932-6203
    ISSN (online) 1932-6203
    ISSN 1932-6203
    DOI 10.1371/journal.pone.0267543
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  5. Article ; Online: 177

    Malenge, Marion M / Patzke, Sebastian / Ree, Anne H / Stokke, Trond / Ceuppens, Peter / Middleton, Brian / Dahle, Jostein / Repetto-Llamazares, Ada H V

    Journal of nuclear medicine : official publication, Society of Nuclear Medicine

    2020  Volume 61, Issue 10, Page(s) 1468–1475

    Abstract: Patients with non-Hodgkin lymphoma (NHL) who are treated with rituximab may develop resistant disease, often associated with changes in expression of CD20. The next-generation β-particle-emitting ... ...

    Abstract Patients with non-Hodgkin lymphoma (NHL) who are treated with rituximab may develop resistant disease, often associated with changes in expression of CD20. The next-generation β-particle-emitting radioimmunoconjugate
    MeSH term(s) Animals ; Antibodies, Monoclonal/therapeutic use ; Antibody-Dependent Cell Cytotoxicity ; Apoptosis/drug effects ; Apoptosis/radiation effects ; Cell Line, Tumor ; Drug Resistance, Neoplasm ; Humans ; Immunoconjugates/therapeutic use ; Lymphoma, Non-Hodgkin/drug therapy ; Lymphoma, Non-Hodgkin/mortality ; Lymphoma, Non-Hodgkin/pathology ; Lymphoma, Non-Hodgkin/radiotherapy ; Mice ; Radioimmunotherapy ; Rituximab/metabolism ; Rituximab/therapeutic use ; Xenograft Model Antitumor Assays
    Chemical Substances (177)Lu-lilotomab satetraxetan ; Antibodies, Monoclonal ; Immunoconjugates ; Rituximab (4F4X42SYQ6)
    Language English
    Publishing date 2020-04-03
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 80272-4
    ISSN 1535-5667 ; 0097-9058 ; 0161-5505 ; 0022-3123
    ISSN (online) 1535-5667
    ISSN 0097-9058 ; 0161-5505 ; 0022-3123
    DOI 10.2967/jnumed.119.237230
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  6. Article ; Online: Impact of genotypic and phenotypic differences in sarcoma models on the outcome of photochemical internalization (PCI) of bleomycin.

    Olsen, Cathrine Elisabeth / Sellevold, Simen / Theodossiou, Theodossis / Patzke, Sebastian / Berg, Kristian

    Photodiagnosis and photodynamic therapy

    2017  Volume 20, Page(s) 35–47

    Abstract: The low curative response to current treatment regimens for most soft tissue sarcomas indicates a strong need for alternative treatment strategies and predictive markers for treatment outcome. PCI (photochemical internalization) is a novel treatment ... ...

    Abstract The low curative response to current treatment regimens for most soft tissue sarcomas indicates a strong need for alternative treatment strategies and predictive markers for treatment outcome. PCI (photochemical internalization) is a novel treatment strategy to translocate drugs into cytosol that otherwise would have been degraded in lysosomes. Two highly geno-and phenotypically different uterine and vulvar leiomyosarcoma cell lines, MES-SA and SK-LMS-1, were treated with bleomycin (BLM) activated by PCI (PCI
    MeSH term(s) Apoptosis/drug effects ; Bleomycin/pharmacology ; Cell Line, Tumor ; Cell Proliferation/drug effects ; Cell Survival/drug effects ; Female ; Glutathione Peroxidase/biosynthesis ; Humans ; Methionine/analogs & derivatives ; Methionine/pharmacology ; Photochemotherapy/methods ; Photosensitizing Agents/pharmacology ; Reactive Oxygen Species/metabolism ; Sarcoma/drug therapy ; Superoxide Dismutase/biosynthesis
    Chemical Substances Photosensitizing Agents ; Reactive Oxygen Species ; Bleomycin (11056-06-7) ; buthionine (4378-14-7) ; Methionine (AE28F7PNPL) ; Glutathione Peroxidase (EC 1.11.1.9) ; Superoxide Dismutase (EC 1.15.1.1)
    Language English
    Publishing date 2017-12
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 2149918-4
    ISSN 1873-1597 ; 1572-1000
    ISSN (online) 1873-1597
    ISSN 1572-1000
    DOI 10.1016/j.pdpdt.2017.08.010
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  7. Article: The Dual Cell Cycle Kinase Inhibitor JNJ-7706621 Reverses Resistance to CD37-Targeted Radioimmunotherapy in Activated B Cell Like Diffuse Large B Cell Lymphoma Cell Lines.

    Rødland, Gro Elise / Melhus, Katrine / Generalov, Roman / Gilani, Sania / Bertoni, Francesco / Dahle, Jostein / Syljuåsen, Randi G / Patzke, Sebastian

    Frontiers in oncology

    2019  Volume 9, Page(s) 1301

    Abstract: The CD37 targeting ... ...

    Abstract The CD37 targeting radioimmunoconjugate
    Language English
    Publishing date 2019-11-29
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2649216-7
    ISSN 2234-943X
    ISSN 2234-943X
    DOI 10.3389/fonc.2019.01301
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  8. Article: Photochemically-Induced Release of Lysosomal Sequestered Sunitinib: Obstacles for Therapeutic Efficacy.

    Wong, Judith Jing Wen / Berstad, Maria Brandal / Fremstedal, Ane Sofie Viset / Berg, Kristian / Patzke, Sebastian / Sørensen, Vigdis / Peng, Qian / Selbo, Pål Kristian / Weyergang, Anette

    Cancers

    2020  Volume 12, Issue 2

    Abstract: Lysosomal accumulation of sunitinib has been suggested as an underlying mechanism of resistance. Here, we investigated if photochemical internalization (PCI), a technology for cytosolic release of drugs entrapped in endosomes and lysosomes, would ... ...

    Abstract Lysosomal accumulation of sunitinib has been suggested as an underlying mechanism of resistance. Here, we investigated if photochemical internalization (PCI), a technology for cytosolic release of drugs entrapped in endosomes and lysosomes, would activate lysosomal sequestered sunitinib. By super-resolution fluorescence microscopy, sunitinib was found to accumulate in the membrane of endo/lysosomal compartments together with the photosensitizer disulfonated tetraphenylchlorin (TPCS
    Language English
    Publishing date 2020-02-11
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2527080-1
    ISSN 2072-6694
    ISSN 2072-6694
    DOI 10.3390/cancers12020417
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  9. Article ; Online: CEP78 functions downstream of CEP350 to control biogenesis of primary cilia by negatively regulating CP110 levels.

    Gonçalves, André Brás / Hasselbalch, Sarah Kirstine / Joensen, Beinta Biskopstø / Patzke, Sebastian / Martens, Pernille / Ohlsen, Signe Krogh / Quinodoz, Mathieu / Nikopoulos, Konstantinos / Suleiman, Reem / Damsø Jeppesen, Magnus Per / Weiss, Catja / Christensen, Søren Tvorup / Rivolta, Carlo / Andersen, Jens S / Farinelli, Pietro / Pedersen, Lotte Bang

    eLife

    2021  Volume 10

    Abstract: CEP78 is a centrosomal protein implicated in ciliogenesis and ciliary length control, and mutations in ... ...

    Abstract CEP78 is a centrosomal protein implicated in ciliogenesis and ciliary length control, and mutations in the
    MeSH term(s) Cell Cycle Proteins/genetics ; Cell Cycle Proteins/metabolism ; Cilia/metabolism ; Gene Knockout Techniques ; Humans ; Microtubule Proteins/genetics ; Microtubule Proteins/metabolism ; Microtubule-Associated Proteins/metabolism ; Nuclear Proteins/genetics ; Nuclear Proteins/metabolism ; Phosphoproteins/metabolism ; Ubiquitination
    Chemical Substances CCP110 protein, human ; CEP350 protein, human ; CEP78 protein, human ; Cell Cycle Proteins ; Microtubule Proteins ; Microtubule-Associated Proteins ; Nuclear Proteins ; Phosphoproteins
    Language English
    Publishing date 2021-07-14
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2687154-3
    ISSN 2050-084X ; 2050-084X
    ISSN (online) 2050-084X
    ISSN 2050-084X
    DOI 10.7554/eLife.63731
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  10. Article ; Online: CSPP-L Associates with the Desmosome of Polarized Epithelial Cells and Is Required for Normal Spheroid Formation.

    Sternemalm, Johan / Geimer, Stefan / Frikstad, Kari-Anne M / Schink, Kay O / Stokke, Trond / Patzke, Sebastian

    PloS one

    2015  Volume 10, Issue 8, Page(s) e0134789

    Abstract: Deleterious mutations of the Centrosome/Spindle Pole associated Protein 1 gene, CSPP1, are causative for Joubert-syndrome and Joubert-related developmental disorders. These disorders are defined by a characteristic mal-development of the brain, but ... ...

    Abstract Deleterious mutations of the Centrosome/Spindle Pole associated Protein 1 gene, CSPP1, are causative for Joubert-syndrome and Joubert-related developmental disorders. These disorders are defined by a characteristic mal-development of the brain, but frequently involve renal and hepatic cyst formation. CSPP-L, the large protein isoform of CSPP1 localizes to microtubule ends of the mitotic mid-spindle and the ciliary axoneme, and is required for ciliogenesis. We here report the microtubule independent but Desmoplakin dependent localization of CSPP-L to Desmosomes in apical-basal polarized epithelial cells. Importantly, siRNA conferred depletion of CSPP-L or Desmoplakin promoted multi-lumen spheroid formation in 3D-cultures of non-ciliated human colon carcinoma Caco-2 cells. Multi-lumen spheroids of CSPP1 siRNA transfectants showed disrupted apical cell junction localization of the cytoskeleton organizing RhoGEF ECT2. Our results hence identify a novel, non-ciliary role for CSPP-L in epithelial morphogenesis.
    MeSH term(s) Adenocarcinoma/pathology ; Animals ; Cell Culture Techniques ; Cell Cycle Proteins/antagonists & inhibitors ; Cell Cycle Proteins/genetics ; Cell Cycle Proteins/physiology ; Cell Line, Tumor ; Cell Polarity ; Colonic Neoplasms/pathology ; Cytoskeleton/ultrastructure ; Desmoplakins/physiology ; Desmosomes/chemistry ; Dogs ; Epithelial Cells/metabolism ; Epithelial Cells/ultrastructure ; Humans ; Intercellular Junctions/physiology ; Intercellular Junctions/ultrastructure ; Madin Darby Canine Kidney Cells ; Mice ; Microtubule-Associated Proteins/analysis ; Microtubule-Associated Proteins/antagonists & inhibitors ; Microtubule-Associated Proteins/genetics ; Microtubule-Associated Proteins/physiology ; Microtubules/physiology ; Morphogenesis ; Neoplasm Proteins/antagonists & inhibitors ; Neoplasm Proteins/genetics ; Neoplasm Proteins/physiology ; RNA Interference ; RNA, Small Interfering/genetics ; Spheroids, Cellular ; Trachea/chemistry ; Trachea/ultrastructure
    Chemical Substances CSPP1 protein, human ; CSPP1 protein, mouse ; Cell Cycle Proteins ; DSP protein, human ; Desmoplakins ; Microtubule-Associated Proteins ; Neoplasm Proteins ; RNA, Small Interfering
    Language English
    Publishing date 2015
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ISSN 1932-6203
    ISSN (online) 1932-6203
    DOI 10.1371/journal.pone.0134789
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