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  1. Article ; Online: Highly efficient Agrobacterium rhizogenes-mediated transformation for functional analysis in woodland strawberry

    Huiqing Yan / Dandan Ma / Peipei Yi / Guilian Sun / Xingyan Chen / Yin Yi / Xiaolong Huang

    Plant Methods, Vol 19, Iss 1, Pp 1-

    2023  Volume 12

    Abstract: Abstract Background The diploid woodland strawberry (Fragaria vesca) is an excellent model plant for investigating economically significant traits and several genetic resources within the Rosaceae family. Agrobacterium rhizogenes-mediated hairy root ... ...

    Abstract Abstract Background The diploid woodland strawberry (Fragaria vesca) is an excellent model plant for investigating economically significant traits and several genetic resources within the Rosaceae family. Agrobacterium rhizogenes-mediated hairy root transformation is an alternative for exploring gene functions, especially the genes specifically expressed in roots. However, the hairy root transformation has not been established in strawberry. Results Here, we described an efficient and rapid hairy root transgenic system for strawberry using A. rhizogenes. Strain of A. rhizogenes MSU440 or C58C1 was the most suitable for hairy root transformation. The transformation efficiency was highest when tissues contained hypocotyls as explants. The optimal procedure involves A. rhizogenes at an optical density (OD600) of 0.7 for 10 min and co-cultivation duration for four days, achieving a transgenic efficiency of up to 71.43%. An auxin responsive promoter DR5 ver2 carrying an enhanced green fluorescent protein (eGFP) marker was transformed by A. rhizogenes MSU440, thereby generating transgenic hairy roots capable of high eGFP expression in root tip and meristem of strawberry where auxin accumulated. Finally, this system was applied for functional analysis using jGCaMP7c, which could sense calcium signals. A significant upsurge in eGFP expression in the transgenic hairy roots was displayed after adding calcium chloride. The results suggested that this approach was feasible for studying specific promoters and could be a tool to analyze gene functions in the roots of strawberries. Conclusion We established a rapid and efficient hairy root transformation in strawberry by optimizing parameters, which was adequate for promoter analysis and functional characterization of candidate genes in strawberry and other rosaceous plants.
    Keywords Agrobacterium rhizogenes ; Woodland strawberry ; Hairy root ; Rosaceae ; Plant culture ; SB1-1110 ; Biology (General) ; QH301-705.5
    Subject code 580
    Language English
    Publishing date 2023-09-01T00:00:00Z
    Publisher BMC
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  2. Article: Molecular characterization of two distinct Smads gene and their roles in the response to bacteria change and wound healing from Hyriopsis cumingii

    Hu, Baoqing / Chungen Wen / Gang Yang / Ming Zhang / Peipei Yi / Shaoqing Jian / Zhenfang Li

    Fish & shellfish immunology. 2017 Aug., v. 67

    2017  

    Abstract: The proteins of Smad family are critical components of the TGF-β superfamily signal pathway. In this paper, we cloned two intracellular mediators of TGF-β signaling, Smad3 and Smad5, from the pearl mussel Hyriopsis cumingii. The full length cDNA of ... ...

    Abstract The proteins of Smad family are critical components of the TGF-β superfamily signal pathway. In this paper, we cloned two intracellular mediators of TGF-β signaling, Smad3 and Smad5, from the pearl mussel Hyriopsis cumingii. The full length cDNA of HcSmad3 and HcSmad5 were 2052 bp and 1908 bp and encoded two polypeptides of 418 and 461amino acid residues, respectively. The deduced amino acid of HcSmad3 and HcSmad5 possessed two putative conserved domains, MH1 and MH2, a conserved phosphorylation motif SSXS at the carboxyl-terminal. The two Smad genes were detected muscle, mantle, hepatopancreas and gill, but with a very low level in heamocytes. The transcripts of Smad3 and Smad5 were up-regulated in hemocytes and hepatopancreas after A. hydrophila and PGN stimulation. However, the expression of Smad3 and Smad5 were only up-regulated in hepatopancreas after A. hydrophila stimulation. The transcripts of Smad3 and Smad5 had a slight change in hepatopancreas after PGN stimulation. The transcripts of HcSmad3 showed very little increase and HcSmad5 mRNA significantly up-regulated after wounding.
    Keywords amino acids ; bacteria ; complementary DNA ; gene expression regulation ; genes ; hemocytes ; hepatopancreas ; Hyriopsis cumingii ; messenger RNA ; muscles ; phosphorylation ; polypeptides ; proteins ; signal transduction ; transforming growth factor beta
    Language English
    Dates of publication 2017-08
    Size p. 129-140.
    Publishing place Elsevier Ltd
    Document type Article
    ZDB-ID 1067738-0
    ISSN 1095-9947 ; 1050-4648
    ISSN (online) 1095-9947
    ISSN 1050-4648
    DOI 10.1016/j.fsi.2017.05.052
    Database NAL-Catalogue (AGRICOLA)

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  3. Article ; Online: Identification of Key Candidate Genes and Pathways for Relationship between Ovarian Cancer and Diabetes Mellitus Using Bioinformatical Analysis

    Sun, Yi / Xiaoyan, Huang / Yun, Liu / Chaoqun, Liu / Jialing, Wen / Liu, Yang / Yingqi, Zhao / Peipei, Yi / Junjun, Peng / Yuanming, Lu

    Asian Pacific journal of cancer prevention : APJCP

    2019  Volume 20, Issue 1, Page(s) 145–155

    MeSH term(s) Cell Adhesion/genetics ; Cell Movement/genetics ; Cell Proliferation/genetics ; Computational Biology/methods ; Diabetes Mellitus/genetics ; Down-Regulation/genetics ; Female ; Humans ; Neovascularization, Pathologic/genetics ; Ovarian Neoplasms/genetics ; Oxidation-Reduction ; Signal Transduction/genetics ; Transcription, Genetic/genetics ; Up-Regulation/genetics
    Language English
    Publishing date 2019-01-25
    Publishing country Thailand
    Document type Journal Article
    ISSN 2476-762X
    ISSN (online) 2476-762X
    DOI 10.31557/APJCP.2019.20.1.145
    Database MEDical Literature Analysis and Retrieval System OnLINE

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