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  1. Article ; Online: Gene dosage of independent dynein arm motor preassembly factors influences cilia assembly in Chlamydomonas reinhardtii.

    Penny, Gervette M / Dutcher, Susan K

    PLoS genetics

    2024  Volume 20, Issue 3, Page(s) e1011038

    Abstract: Motile cilia assembly utilizes over 800 structural and cytoplasmic proteins. Variants in approximately 58 genes cause primary ciliary dyskinesia (PCD) in humans, including the dynein arm (pre)assembly factor (DNAAF) gene DNAAF4. In humans, outer dynein ... ...

    Abstract Motile cilia assembly utilizes over 800 structural and cytoplasmic proteins. Variants in approximately 58 genes cause primary ciliary dyskinesia (PCD) in humans, including the dynein arm (pre)assembly factor (DNAAF) gene DNAAF4. In humans, outer dynein arms (ODAs) and inner dynein arms (IDAs) fail to assemble motile cilia when DNAAF4 function is disrupted. In Chlamydomonas reinhardtii, a ciliated unicellular alga, the DNAAF4 ortholog is called PF23. The pf23-1 mutant assembles short cilia and lacks IDAs, but partially retains ODAs. The cilia of a new null allele (pf23-4) completely lack ODAs and IDAs and are even shorter than cilia from pf23-1. In addition, PF23 plays a role in the cytoplasmic modification of IC138, a protein of the two-headed IDA (I1/f). As most PCD variants in humans are recessive, we sought to test if heterozygosity at two genes affects ciliary function using a second-site non-complementation (SSNC) screening approach. We asked if phenotypes were observed in diploids with pairwise heterozygous combinations of 21 well-characterized ciliary mutant Chlamydomonas strains. Vegetative cultures of single and double heterozygous diploid cells did not show SSNC for motility phenotypes. When protein synthesis is inhibited, wild-type Chlamydomonas cells utilize the pool of cytoplasmic proteins to assemble half-length cilia. In this sensitized assay, 8 double heterozygous diploids with pf23 and other DNAAF mutations show SSNC; they assemble shorter cilia than wild-type. In contrast, double heterozygosity of the other 203 strains showed no effect on ciliary assembly. Immunoblots of diploids heterozygous for pf23 and wdr92 or oda8 show that PF23 is reduced by half in these strains, and that PF23 dosage affects phenotype severity. Reductions in PF23 and another DNAAF in diploids affect the ability to assemble ODAs and IDAs and impedes ciliary assembly. Thus, dosage of multiple DNAAFs is an important factor in cilia assembly and regeneration.
    MeSH term(s) Humans ; Chlamydomonas reinhardtii/genetics ; Chlamydomonas reinhardtii/metabolism ; Cilia/genetics ; Cilia/metabolism ; Mutation ; Dyneins/genetics ; Dyneins/metabolism ; Proteins/genetics ; Chlamydomonas/genetics ; Chlamydomonas/metabolism ; Gene Dosage ; Axoneme/genetics ; Axoneme/metabolism
    Chemical Substances Dyneins (EC 3.6.4.2) ; Proteins
    Language English
    Publishing date 2024-03-18
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2186725-2
    ISSN 1553-7404 ; 1553-7390
    ISSN (online) 1553-7404
    ISSN 1553-7390
    DOI 10.1371/journal.pgen.1011038
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: A gap-free genome assembly of Chlamydomonas reinhardtii and detection of translocations induced by CRISPR-mediated mutagenesis.

    Payne, Zachary L / Penny, Gervette M / Turner, Tychele N / Dutcher, Susan K

    Plant communications

    2022  Volume 4, Issue 2, Page(s) 100493

    Abstract: Genomic assemblies of the unicellular green alga Chlamydomonas reinhardtii have provided important resources for researchers. However, assembly errors, large gaps, and unplaced scaffolds as well as strain-specific variants currently impede many types of ... ...

    Abstract Genomic assemblies of the unicellular green alga Chlamydomonas reinhardtii have provided important resources for researchers. However, assembly errors, large gaps, and unplaced scaffolds as well as strain-specific variants currently impede many types of analysis. By combining PacBio HiFi and Oxford Nanopore long-read technologies, we generated a de novo genome assembly for strain CC-5816, derived from crosses of strains CC-125 and CC-124. Multiple methods of evaluating genome completeness and base-pair error rate suggest that the final telomere-to-telomere assembly is highly accurate. The CC-5816 assembly enabled previously difficult analyses that include characterization of the 17 centromeres, rDNA arrays on three chromosomes, and 56 insertions of organellar DNA into the nuclear genome. Using Nanopore sequencing, we identified sites of cytosine (CpG) methylation, which are enriched at centromeres. We analyzed CRISPR-Cas9 insertional mutants in the PF23 gene. Two of the three alleles produced progeny that displayed patterns of meiotic inviability that suggested the presence of a chromosomal aberration. Mapping Nanopore reads from pf23-2 and pf23-3 onto the CC-5816 genome showed that these two strains each carry a translocation that was initiated at the PF23 gene locus on chromosome 11 and joined with chromosomes 5 or 3, respectively. The translocations were verified by demonstrating linkage between loci on the two translocated chromosomes in meiotic progeny. The three pf23 alleles display the expected short-cilia phenotype, and immunoblotting showed that pf23-2 lacks the PF23 protein. Our CC-5816 genome assembly will undoubtedly provide an important tool for the Chlamydomonas research community.
    MeSH term(s) Chlamydomonas reinhardtii/genetics ; High-Throughput Nucleotide Sequencing/methods ; Mutagenesis
    Language English
    Publishing date 2022-11-17
    Publishing country China
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ISSN 2590-3462
    ISSN (online) 2590-3462
    DOI 10.1016/j.xplc.2022.100493
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Probing GATA factor function in mouse Leydig cells via testicular injection of adenoviral vectors.

    Penny, Gervette M / Cochran, Rebecca B / Pihlajoki, Marjut / Kyrönlahti, Antti / Schrade, Anja / Häkkinen, Merja / Toppari, Jorma / Heikinheimo, Markku / Wilson, David B

    Reproduction (Cambridge, England)

    2017  Volume 154, Issue 4, Page(s) 455–467

    Abstract: Testicular Leydig cells produce androgens essential for proper male reproductive development and fertility. Here, we describe a new Leydig cell ablation model based on Cre/Lox recombination of ... ...

    Abstract Testicular Leydig cells produce androgens essential for proper male reproductive development and fertility. Here, we describe a new Leydig cell ablation model based on Cre/Lox recombination of mouse
    MeSH term(s) 17-Hydroxysteroid Dehydrogenases/genetics ; 17-Hydroxysteroid Dehydrogenases/metabolism ; Adenoviridae/genetics ; Animals ; Cell Survival ; Female ; Fertility ; GATA4 Transcription Factor/deficiency ; GATA4 Transcription Factor/genetics ; GATA4 Transcription Factor/metabolism ; GATA6 Transcription Factor/deficiency ; GATA6 Transcription Factor/genetics ; GATA6 Transcription Factor/metabolism ; Genetic Vectors ; Genotype ; Gonadal Steroid Hormones/biosynthesis ; Insulin/genetics ; Insulin/metabolism ; Integrases/genetics ; Leydig Cells/metabolism ; Leydig Cells/ultrastructure ; Male ; Mice, Knockout ; Multienzyme Complexes/genetics ; Multienzyme Complexes/metabolism ; Phenotype ; Pregnancy ; Progesterone Reductase/genetics ; Progesterone Reductase/metabolism ; Proteins/genetics ; Proteins/metabolism ; Signal Transduction ; Steroid 17-alpha-Hydroxylase/genetics ; Steroid 17-alpha-Hydroxylase/metabolism ; Steroid Isomerases/genetics ; Steroid Isomerases/metabolism ; Time Factors ; Transduction, Genetic
    Chemical Substances 3 beta-hydroxysteroid oxidoreductase-delta(5) 3-ketosteroid isomerase ; GATA4 Transcription Factor ; GATA6 Transcription Factor ; Gata4 protein, mouse ; Gata6 protein, mouse ; Gonadal Steroid Hormones ; Insulin ; Leydig insulin-like protein ; Multienzyme Complexes ; Proteins ; 17-Hydroxysteroid Dehydrogenases (EC 1.1.-) ; 17beta-hydroxysteroid dehydrogenase type 3 (EC 1.1.-) ; Progesterone Reductase (EC 1.1.1.145) ; Steroid 17-alpha-Hydroxylase (EC 1.14.14.19) ; Cre recombinase (EC 2.7.7.-) ; Integrases (EC 2.7.7.-) ; Steroid Isomerases (EC 5.3.3.-)
    Language English
    Publishing date 2017-07-14
    Publishing country England
    Document type Journal Article ; Research Support, U.S. Gov't, Non-P.H.S. ; Research Support, Non-U.S. Gov't ; Research Support, N.I.H., Extramural
    ZDB-ID 2034501-X
    ISSN 1741-7899 ; 1470-1626 ; 1476-3990
    ISSN (online) 1741-7899
    ISSN 1470-1626 ; 1476-3990
    DOI 10.1530/REP-17-0311
    Database MEDical Literature Analysis and Retrieval System OnLINE

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