LIVIVO - Das Suchportal für Lebenswissenschaften

switch to English language
Erweiterte Suche

Ihre letzten Suchen

  1. AU="Phan, Isabelle"
  2. AU="García-Carrera, Inés"
  3. AU=Rude Robert K
  4. AU="Ferragalli, Beatrice"
  5. AU="Negrão Ferreira, Fabielle"
  6. AU="Acin, Yolène"
  7. AU="Zarrintan, Armin"
  8. AU="Anne Schedel"
  9. AU="Youngmin Bu"
  10. AU="Edriss, Fatima"
  11. AU="Liu, Changxue"
  12. AU="Spruit, Martijn A"
  13. AU="Zhang, Dai-Gui"
  14. AU="Appelen, Diebrecht"
  15. AU="Moreira, Jânio Cordeiro"

Suchergebnis

Treffer 1 - 10 von insgesamt 55

Suchoptionen

  1. Artikel ; Online: A divergent protein kinase A regulatory subunit essential for morphogenesis of the human pathogen Leishmania.

    Fischer Weinberger, Renana / Bachmaier, Sabine / Ober, Veronica / Githure, George B / Dandugudumula, Ramu / Phan, Isabelle Q / Almoznino, Michal / Polatoglou, Eleni / Tsigankov, Polina / Nitzan Koren, Roni / Myler, Peter J / Boshart, Michael / Zilberstein, Dan

    PLoS pathogens

    2024  Band 20, Heft 3, Seite(n) e1012073

    Abstract: Parasitic protozoa of the genus Leishmania cycle between the phagolysosome of mammalian macrophages, where they reside as rounded intracellular amastigotes, and the midgut of female sand flies, which they colonize as elongated extracellular promastigotes. ...

    Abstract Parasitic protozoa of the genus Leishmania cycle between the phagolysosome of mammalian macrophages, where they reside as rounded intracellular amastigotes, and the midgut of female sand flies, which they colonize as elongated extracellular promastigotes. Previous studies indicated that protein kinase A (PKA) plays an important role in the initial steps of promastigote differentiation into amastigotes. Here, we describe a novel regulatory subunit of PKA (which we have named PKAR3) that is unique to Leishmania and most (but not all) other Kinetoplastidae. PKAR3 is localized to subpellicular microtubules (SPMT) in the cell cortex, where it recruits a specific catalytic subunit (PKAC3). Promastigotes of pkar3 or pkac3 null mutants lose their elongated shape and become rounded but remain flagellated. Truncation of an N-terminal formin homology (FH)-like domain of PKAR3 results in its detachment from the SPMT, also leading to rounded promastigotes. Thus, the tethering of PKAC3 via PKAR3 at the cell cortex is essential for maintenance of the elongated shape of promastigotes. This role of PKAR3 is reminiscent of PKARIβ and PKARIIβ binding to microtubules of mammalian neurons, which is essential for the elongation of dendrites and axons, respectively. Interestingly, PKAR3 binds nucleoside analogs, but not cAMP, with a high affinity similar to the PKAR1 isoform of Trypanosoma. We propose that these early-diverged protists have re-purposed PKA for a novel signaling pathway that spatiotemporally controls microtubule remodeling and cell shape.
    Mesh-Begriff(e) Animals ; Humans ; Female ; Leishmania/metabolism ; Cyclic AMP-Dependent Protein Kinases/metabolism ; Macrophages/metabolism ; Cell Differentiation/physiology ; Morphogenesis ; Mammals
    Chemische Substanzen Cyclic AMP-Dependent Protein Kinases (EC 2.7.11.11)
    Sprache Englisch
    Erscheinungsdatum 2024-03-29
    Erscheinungsland United States
    Dokumenttyp Journal Article
    ZDB-ID 2205412-1
    ISSN 1553-7374 ; 1553-7374
    ISSN (online) 1553-7374
    ISSN 1553-7374
    DOI 10.1371/journal.ppat.1012073
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

    Zusatzmaterialien

    Kategorien

  2. Artikel ; Online: Chromatin-Associated Protein Complexes Link DNA Base J and Transcription Termination in

    Jensen, Bryan C / Phan, Isabelle Q / McDonald, Jacquelyn R / Sur, Aakash / Gillespie, Mark A / Ranish, Jeffrey A / Parsons, Marilyn / Myler, Peter J

    mSphere

    2021  Band 6, Heft 1

    Abstract: Unlike most other eukaryotes, ...

    Abstract Unlike most other eukaryotes,
    Mesh-Begriff(e) Chromatin/genetics ; Chromatin/metabolism ; DNA, Protozoan/metabolism ; DNA-Binding Proteins/genetics ; DNA-Binding Proteins/metabolism ; Gene Expression Regulation ; Leishmania/genetics ; Protozoan Proteins/genetics ; RNA, Messenger ; Transcription Termination, Genetic
    Chemische Substanzen Chromatin ; DNA, Protozoan ; DNA-Binding Proteins ; Protozoan Proteins ; RNA, Messenger
    Sprache Englisch
    Erscheinungsdatum 2021-02-24
    Erscheinungsland United States
    Dokumenttyp Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ISSN 2379-5042
    ISSN (online) 2379-5042
    DOI 10.1128/mSphere.01204-20
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

    Zusatzmaterialien

    Kategorien

  3. Artikel: Evolutionary Diversification of Host-Targeted Bartonella Effectors Proteins Derived from a Conserved FicTA Toxin-Antitoxin Module

    Schirmer, Tilman / de Beer, Tjaart A. P. / Tamegger, Stefanie / Harms, Alexander / Dietz, Nikolaus / Dranow, David M. / Edwards, Thomas E. / Myler, Peter J. / Phan, Isabelle / Dehio, Christoph

    Microorganisms. 2021 July 31, v. 9, no. 8

    2021  

    Abstract: Proteins containing a FIC domain catalyze AMPylation and other post-translational modifications (PTMs). In bacteria, they are typically part of FicTA toxin-antitoxin modules that control conserved biochemical processes such as topoisomerase activity, but ...

    Abstract Proteins containing a FIC domain catalyze AMPylation and other post-translational modifications (PTMs). In bacteria, they are typically part of FicTA toxin-antitoxin modules that control conserved biochemical processes such as topoisomerase activity, but they have also repeatedly diversified into host-targeted virulence factors. Among these, Bartonella effector proteins (Beps) comprise a particularly diverse ensemble of FIC domains that subvert various host cellular functions. However, no comprehensive comparative analysis has been performed to infer molecular mechanisms underlying the biochemical and functional diversification of FIC domains in the vast Bep family. Here, we used X-ray crystallography, structural modelling, and phylogenetic analyses to unravel the expansion and diversification of Bep repertoires that evolved in parallel in three Bartonella lineages from a single ancestral FicTA toxin-antitoxin module. Our analysis is based on 99 non-redundant Bep sequences and nine crystal structures. Inferred from the conservation of the FIC signature motif that comprises the catalytic histidine and residues involved in substrate binding, about half of them represent AMP transferases. A quarter of Beps show a glutamate in a strategic position in the putative substrate binding pocket that would interfere with triphosphate-nucleotide binding but may allow binding of an AMPylated target for deAMPylation or another substrate to catalyze a distinct PTM. The β-hairpin flap that registers the modifiable target segment to the active site exhibits remarkable structural variability. The corresponding sequences form few well-defined groups that may recognize distinct target proteins. The binding of Beps to promiscuous FicA antitoxins is well conserved, indicating a role of the antitoxin to inhibit enzymatic activity or to serve as a chaperone for the FIC domain before translocation of the Bep into host cells. Taken together, our analysis indicates a remarkable functional plasticity of Beps that is mostly brought about by structural changes in the substrate pocket and the target dock. These findings may guide future structure–function analyses of the highly versatile FIC domains.
    Schlagwörter Bartonella ; X-ray diffraction ; active sites ; antitoxins ; enzyme activity ; glutamic acid ; histidine ; phylogeny ; plasticity ; transferases ; virulence
    Sprache Englisch
    Erscheinungsverlauf 2021-0731
    Erscheinungsort Multidisciplinary Digital Publishing Institute
    Dokumenttyp Artikel
    ZDB-ID 2720891-6
    ISSN 2076-2607
    ISSN 2076-2607
    DOI 10.3390/microorganisms9081645
    Datenquelle NAL Katalog (AGRICOLA)

    Zusatzmaterialien

    Kategorien

  4. Artikel: Enolase inhibitors as therapeutic leads for

    Milanes, Jillian E / Yan, Victoria C / Pham, Cong-Dat / Muller, Florian / Kwain, Samuel / Rees, Kerrick C / Dominy, Brian N / Whitehead, Daniel C / Millward, Steven W / Bolejack, Madison / Abendroth, Jan / Phan, Isabelle Q / Staker, Bart / Moseman, E Ashley / Zhang, Xiang / Ma, Xipeng / Jebet, Audriy / Yin, Xinmin / Morris, James C

    bioRxiv : the preprint server for biology

    2024  

    Abstract: Infections with the pathogenic free-living ... ...

    Abstract Infections with the pathogenic free-living amoebae
    Sprache Englisch
    Erscheinungsdatum 2024-01-17
    Erscheinungsland United States
    Dokumenttyp Preprint
    DOI 10.1101/2024.01.16.575558
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

    Zusatzmaterialien

    Kategorien

  5. Artikel ; Online: Selecting targets from eukaryotic parasites for structural genomics and drug discovery.

    Phan, Isabelle Q H / Stacy, Robin / Myler, Peter J

    Methods in molecular biology (Clifton, N.J.)

    2014  Band 1140, Seite(n) 53–59

    Abstract: The selection of targets is the first step for any structural genomics project. The application of structural genomics approaches to drug discovery also starts with the selection of targets. Here, three protocols are described that were developed to ... ...

    Abstract The selection of targets is the first step for any structural genomics project. The application of structural genomics approaches to drug discovery also starts with the selection of targets. Here, three protocols are described that were developed to select targets from eukaryotic pathogens. These protocols could also be applied to other drug discovery projects.
    Mesh-Begriff(e) Animals ; Computational Biology ; Drug Discovery/methods ; Eukaryota/genetics ; Genomics/methods ; Humans ; Molecular Biology/methods ; Parasites/genetics ; Parasites/pathogenicity ; Protein Conformation
    Sprache Englisch
    Erscheinungsdatum 2014-03-04
    Erscheinungsland United States
    Dokumenttyp Journal Article ; Research Support, N.I.H., Extramural ; Research Support, U.S. Gov't, Non-P.H.S.
    ISSN 1940-6029
    ISSN (online) 1940-6029
    DOI 10.1007/978-1-4939-0354-2_4
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

    Zusatzmaterialien

    Kategorien

  6. Artikel ; Online: Shotgun Kinetic Target-Guided Synthesis Approach Enables the Discovery of Small-Molecule Inhibitors against Pathogenic Free-Living Amoeba Glucokinases.

    Kassu, Mintesinot / Parvatkar, Prakash T / Milanes, Jillian / Monaghan, Neil P / Kim, Chungsik / Dowgiallo, Matthew / Zhao, Yingzhao / Asakawa, Ami H / Huang, Lili / Wagner, Alicia / Miller, Brandon / Carter, Karissa / Barrett, Kayleigh F / Tillery, Logan M / Barrett, Lynn K / Phan, Isabelle Q / Subramanian, Sandhya / Myler, Peter J / Van Voorhis, Wesley C /
    Leahy, James W / Rice, Christopher A / Kyle, Dennis E / Morris, James / Manetsch, Roman

    ACS infectious diseases

    2023  Band 9, Heft 11, Seite(n) 2190–2201

    Abstract: Pathogenic free-living amoebae (pFLA) can cause life-threatening central nervous system (CNS) infections and warrant the investigation of new chemical agents to combat the rise of infection from these pathogens. ...

    Abstract Pathogenic free-living amoebae (pFLA) can cause life-threatening central nervous system (CNS) infections and warrant the investigation of new chemical agents to combat the rise of infection from these pathogens.
    Mesh-Begriff(e) Humans ; Amoeba ; Glucokinase ; Naegleria fowleri ; Balamuthia mandrillaris ; Acanthamoeba castellanii
    Chemische Substanzen Glucokinase (EC 2.7.1.2)
    Sprache Englisch
    Erscheinungsdatum 2023-10-11
    Erscheinungsland United States
    Dokumenttyp Journal Article ; Research Support, N.I.H., Extramural
    ISSN 2373-8227
    ISSN (online) 2373-8227
    DOI 10.1021/acsinfecdis.3c00284
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

    Zusatzmaterialien

    Kategorien

  7. Artikel: Evolutionary Diversification of Host-Targeted

    Schirmer, Tilman / de Beer, Tjaart A P / Tamegger, Stefanie / Harms, Alexander / Dietz, Nikolaus / Dranow, David M / Edwards, Thomas E / Myler, Peter J / Phan, Isabelle / Dehio, Christoph

    Microorganisms

    2021  Band 9, Heft 8

    Abstract: Proteins containing a FIC domain catalyze AMPylation and other post-translational modifications (PTMs). In bacteria, they are typically part of FicTA toxin-antitoxin modules that control conserved biochemical processes such as topoisomerase activity, but ...

    Abstract Proteins containing a FIC domain catalyze AMPylation and other post-translational modifications (PTMs). In bacteria, they are typically part of FicTA toxin-antitoxin modules that control conserved biochemical processes such as topoisomerase activity, but they have also repeatedly diversified into host-targeted virulence factors. Among these,
    Sprache Englisch
    Erscheinungsdatum 2021-07-31
    Erscheinungsland Switzerland
    Dokumenttyp Journal Article
    ZDB-ID 2720891-6
    ISSN 2076-2607
    ISSN 2076-2607
    DOI 10.3390/microorganisms9081645
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

    Zusatzmaterialien

    Kategorien

  8. Artikel ; Online: Characterization of Glucokinases from Pathogenic Free-Living Amoebae.

    Milanes, Jillian E / Suryadi, Jimmy / Monaghan, Neil P / Harding, Elijah M / Morris, Corbin S / Rozema, Soren D / Khalifa, Muhammad M / Golden, Jennifer E / Phan, Isabelle Q / Zigweid, Rachael / Abendroth, Jan / Rice, Christopher A / McCord, Hayden T / Wilson, Stevin / Fenwick, Michael K / Morris, James C

    Antimicrobial agents and chemotherapy

    2022  Band 66, Heft 6, Seite(n) e0237321

    Abstract: Infection with pathogenic free-living amoebae, including Naegleria fowleri, ...

    Abstract Infection with pathogenic free-living amoebae, including Naegleria fowleri,
    Mesh-Begriff(e) Acanthamoeba ; Amebiasis/drug therapy ; Amebiasis/parasitology ; Amoeba ; Balamuthia mandrillaris ; Glucokinase ; Humans ; Naegleria fowleri
    Chemische Substanzen Glucokinase (EC 2.7.1.2)
    Sprache Englisch
    Erscheinungsdatum 2022-05-23
    Erscheinungsland United States
    Dokumenttyp Journal Article ; Research Support, U.S. Gov't, Non-P.H.S. ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 217602-6
    ISSN 1098-6596 ; 0066-4804
    ISSN (online) 1098-6596
    ISSN 0066-4804
    DOI 10.1128/aac.02373-21
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

    Zusatzmaterialien

    Kategorien

  9. Artikel ; Online: The domain architecture of the protozoan protein J-DNA-binding protein 1 suggests synergy between base J DNA binding and thymidine hydroxylase activity.

    Adamopoulos, Athanassios / Heidebrecht, Tatjana / Roosendaal, Jeroen / Touw, Wouter G / Phan, Isabelle Q / Beijnen, Jos / Perrakis, Anastassis

    The Journal of biological chemistry

    2019  Band 294, Heft 34, Seite(n) 12815–12825

    Abstract: J-DNA-binding protein 1 (JBP1) contributes to the biosynthesis and maintenance of base J (β-d-glucosyl-hydroxymethyluracil), an epigenetic modification of thymidine (T) confined to pathogenic protozoa such ... ...

    Abstract J-DNA-binding protein 1 (JBP1) contributes to the biosynthesis and maintenance of base J (β-d-glucosyl-hydroxymethyluracil), an epigenetic modification of thymidine (T) confined to pathogenic protozoa such as
    Mesh-Begriff(e) Binding Sites ; DNA, Protozoan/chemistry ; DNA, Protozoan/metabolism ; DNA-Binding Proteins/chemistry ; DNA-Binding Proteins/genetics ; DNA-Binding Proteins/metabolism ; Leishmania/chemistry ; Leishmania/metabolism ; Mixed Function Oxygenases/chemistry ; Mixed Function Oxygenases/metabolism ; Models, Molecular ; Protein Conformation ; Protozoan Proteins/chemistry ; Protozoan Proteins/genetics ; Protozoan Proteins/metabolism ; Trypanosoma/chemistry ; Trypanosoma/metabolism
    Chemische Substanzen DNA, Protozoan ; DNA-Binding Proteins ; J-specific DNA-binding protein, protozoa ; Protozoan Proteins ; Mixed Function Oxygenases (EC 1.-)
    Sprache Englisch
    Erscheinungsdatum 2019-07-10
    Erscheinungsland United States
    Dokumenttyp Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 2997-x
    ISSN 1083-351X ; 0021-9258
    ISSN (online) 1083-351X
    ISSN 0021-9258
    DOI 10.1074/jbc.RA119.007393
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

    Zusatzmaterialien

    Kategorien

  10. Artikel ; Online: Structural diversity in the Mycobacteria DUF3349 superfamily.

    Buchko, Garry W / Abendroth, Jan / Robinson, John I / Phan, Isabelle Q / Myler, Peter J / Edwards, Thomas E

    Protein science : a publication of the Protein Society

    2019  Band 29, Heft 3, Seite(n) 670–685

    Abstract: A protein superfamily with a "Domain of Unknown Function,", DUF3349 (PF11829), is present predominately in Mycobacterium and Rhodococcus bacterial species suggesting that these proteins may have a biological function unique to these bacteria. We ... ...

    Abstract A protein superfamily with a "Domain of Unknown Function,", DUF3349 (PF11829), is present predominately in Mycobacterium and Rhodococcus bacterial species suggesting that these proteins may have a biological function unique to these bacteria. We previously reported the inaugural structure of a DUF3349 superfamily member, Mycobacterium tuberculosis Rv0543c. Here, we report the structures determined for three additional DUF3349 proteins: Mycobacterium smegmatis MSMEG_1063 and MSMEG_1066 and Mycobacterium abscessus MAB_3403c. Like Rv0543c, the NMR solution structure of MSMEG_1063 revealed a monomeric five α-helix bundle with a similar overall topology. Conversely, the crystal structure of MSMEG_1066 revealed a five α-helix protein with a strikingly different topology and a tetrameric quaternary structure that was confirmed by size exclusion chromatography. The NMR solution structure of a fourth member of the DUF3349 superfamily, MAB_3403c, with 18 residues missing at the N-terminus, revealed a monomeric α-helical protein with a folding topology similar to the three C-terminal helices in the protomer of the MSMEG_1066 tetramer. These structures, together with a GREMLIN-based bioinformatics analysis of the DUF3349 primary amino acid sequences, suggest two subfamilies within the DUF3349 family. The division of the DUF3349 into two distinct subfamilies would have been lost if structure solution had stopped with the first structure in the DUF3349 family, highlighting the insights generated by solving multiple structures within a protein superfamily. Future studies will determine if the structural diversity at the tertiary and quaternary levels in the DUF3349 protein superfamily have functional roles in Mycobacteria and Rhodococcus species with potential implications for structure-based drug discovery.
    Mesh-Begriff(e) Bacterial Proteins/chemistry ; Models, Molecular ; Mycobacterium/chemistry ; Nuclear Magnetic Resonance, Biomolecular ; Protein Conformation
    Chemische Substanzen Bacterial Proteins
    Sprache Englisch
    Erscheinungsdatum 2019-11-21
    Erscheinungsland United States
    Dokumenttyp Journal Article ; Research Support, N.I.H., Extramural ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 1106283-6
    ISSN 1469-896X ; 0961-8368
    ISSN (online) 1469-896X
    ISSN 0961-8368
    DOI 10.1002/pro.3758
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

    Zusatzmaterialien

    Kategorien

Zum Seitenanfang