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  1. Article ; Online: Immunogenomics of Killer Cell Immunoglobulin-Like Receptor (KIR) and HLA Class I: Coevolution and Consequences for Human Health.

    Pollock, Nicholas R / Harrison, Genelle F / Norman, Paul J

    The journal of allergy and clinical immunology. In practice

    2022  Volume 10, Issue 7, Page(s) 1763–1775

    Abstract: Interactions of killer cell immunoglobin-like receptors (KIR) with human leukocyte antigens (HLA) class I regulate effector functions of key cytotoxic cells of innate and adaptive immunity. The extreme diversity of this interaction is genetically ... ...

    Abstract Interactions of killer cell immunoglobin-like receptors (KIR) with human leukocyte antigens (HLA) class I regulate effector functions of key cytotoxic cells of innate and adaptive immunity. The extreme diversity of this interaction is genetically determined, having evolved in the ever-changing environment of pathogen exposure. Diversity of KIR and HLA genes is further facilitated by their independent segregation on separate chromosomes. That fetal implantation relies on many of the same types of immune cells as infection control places certain constraints on the evolution of KIR interactions with HLA. Consequently, specific inherited combinations of receptors and ligands may predispose to specific immune-mediated diseases, including autoimmunity. Combinatorial diversity of KIR and HLA class I can also differentiate success rates of immunotherapy directed to these diseases. Progress toward both etiopathology and predicting response to therapy is being achieved through detailed characterization of the extent and consequences of the combinatorial diversity of KIR and HLA. Achieving these goals is more tractable with the development of integrated analyses of molecular evolution, function, and pathology that will establish guidelines for understanding and managing risks. Here, we present what is known about the coevolution of KIR with HLA class I and the impact of their complexity on immune function and homeostasis.
    MeSH term(s) Evolution, Molecular ; Genes, MHC Class I/genetics ; Genes, MHC Class I/immunology ; HLA Antigens/genetics ; HLA Antigens/immunology ; Health ; Histocompatibility Antigens Class I/genetics ; Histocompatibility Antigens Class I/immunology ; Humans ; Immunogenetic Phenomena/genetics ; Killer Cells, Natural/immunology ; Receptors, KIR/genetics ; Receptors, KIR/immunology
    Chemical Substances HLA Antigens ; Histocompatibility Antigens Class I ; Receptors, KIR
    Language English
    Publishing date 2022-05-10
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural
    ZDB-ID 2843237-X
    ISSN 2213-2201 ; 2213-2198
    ISSN (online) 2213-2201
    ISSN 2213-2198
    DOI 10.1016/j.jaip.2022.04.036
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Donor KIR2DL1 Allelic Polymorphism Influences Posthematopoietic Progenitor Cell Transplantation Outcomes in the T Cell Depleted and Reduced Intensity Conditioning Setting.

    Wright, Paul A / van de Pasch, Loes A L / Dignan, Fiona L / Kichula, Katherine M / Pollock, Nicholas R / Norman, Paul J / Marchan, Earl / Hill, Lesley / Vandelbosch, Sanne / Fullwood, Catherine / Sheldon, Stephen / Hampson, Lynne / Tholouli, Eleni / Poulton, Kay V

    Transplantation and cellular therapy

    2024  Volume 30, Issue 5, Page(s) 488.e1–488.e15

    Abstract: The majority of established KIR clinical assessment algorithms used for donor selection for hematopoietic progenitor cell transplantation (HPCT) evaluate gene content (presence/absence) of the KIR gene complex. In comparison, relatively little is known ... ...

    Abstract The majority of established KIR clinical assessment algorithms used for donor selection for hematopoietic progenitor cell transplantation (HPCT) evaluate gene content (presence/absence) of the KIR gene complex. In comparison, relatively little is known about the impact of KIR allelic polymorphism. By analyzing donors of T cell depleted (TcD) reduced intensity conditioning (RIC) HPCT, this study investigated the influence on post-transplant outcome of 2 polymorphic residues of the inhibitory KIR2DL1. The aim of this study was to expand upon existing research into the influence of KIR2DL1 allelic polymorphism upon post-transplant outcome. The effects of allele groups upon transplant outcomes were investigated within a patient cohort using a defined treatment protocol of RIC with TcD. Using phylogenetic data, KIR2DL1 allelic polymorphism was categorized into groups on the basis of variation within codons 114 and 245 (positive or negative for the following groups: KIR2DL1*002/001g, KIR2DL1*003, KIR2DL1*004g) and the identification of null alleles. The influence of these KIR2DL1 allele groups in hematopoietic progenitor cell transplantation (HPCT) donors was assessed in the post-transplant data of 86 acute myelogenous leukemia patients receiving RIC TcD HPCT at a single center. KIR2DL1 allele groups in the donor significantly impacted upon 5-year post-transplant outcomes in RIC TcD HPCT. Donor KIR2DL1*003 presented the greatest influence upon post-transplant outcomes, with KIR2DL1*003 positive donors severely reducing 5-year post-transplant overall survival (OS) compared to those receiving a transplant from a KIR2DL1*003 negative donor (KIR2DL1*003 pos versus neg: 27.0% versus 60.0%, P = .008, p
    MeSH term(s) Humans ; Hematopoietic Stem Cell Transplantation/methods ; Receptors, KIR2DL1/genetics ; Alleles ; Polymorphism, Genetic ; Male ; Female ; Transplantation Conditioning ; Middle Aged ; Adult ; Tissue Donors ; Lymphocyte Depletion ; Leukemia, Myeloid, Acute/genetics ; Leukemia, Myeloid, Acute/therapy ; Treatment Outcome ; Aged ; T-Lymphocytes/immunology
    Chemical Substances Receptors, KIR2DL1 ; KIR2DL1 protein, human
    Language English
    Publishing date 2024-02-17
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 3062231-1
    ISSN 2666-6367
    ISSN (online) 2666-6367
    DOI 10.1016/j.jtct.2024.02.014
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Complete sequences of six major histocompatibility complex haplotypes, including all the major MHC class II structures.

    Houwaart, Torsten / Scholz, Stephan / Pollock, Nicholas R / Palmer, William H / Kichula, Katherine M / Strelow, Daniel / Le, Duyen B / Belick, Dana / Hülse, Lisanna / Lautwein, Tobias / Wachtmeister, Thorsten / Wollenweber, Tassilo E / Henrich, Birgit / Köhrer, Karl / Parham, Peter / Guethlein, Lisbeth A / Norman, Paul J / Dilthey, Alexander T

    HLA

    2023  Volume 102, Issue 1, Page(s) 28–43

    Abstract: Accurate and comprehensive immunogenetic reference panels are key to the successful implementation of population-scale immunogenomics. The 5Mbp Major Histocompatibility Complex (MHC) is the most polymorphic region of the human genome and associated with ... ...

    Abstract Accurate and comprehensive immunogenetic reference panels are key to the successful implementation of population-scale immunogenomics. The 5Mbp Major Histocompatibility Complex (MHC) is the most polymorphic region of the human genome and associated with multiple immune-mediated diseases, transplant matching and therapy responses. Analysis of MHC genetic variation is severely complicated by complex patterns of sequence variation, linkage disequilibrium and a lack of fully resolved MHC reference haplotypes, increasing the risk of spurious findings on analyzing this medically important region. Integrating Illumina, ultra-long Nanopore, and PacBio HiFi sequencing as well as bespoke bioinformatics, we completed five of the alternative MHC reference haplotypes of the current (GRCh38/hg38) build of the human reference genome and added one other. The six assembled MHC haplotypes encompass the DR1 and DR4 haplotype structures in addition to the previously completed DR2 and DR3, as well as six distinct classes of the structurally variable C4 region. Analysis of the assembled haplotypes showed that MHC class II sequence structures, including repeat element positions, are generally conserved within the DR haplotype supergroups, and that sequence diversity peaks in three regions around HLA-A, HLA-B+C, and the HLA class II genes. Demonstrating the potential for improved short-read analysis, the number of proper read pairs recruited to the MHC was found to be increased by 0.06%-0.49% in a 1000 Genomes Project read remapping experiment with seven diverse samples. Furthermore, the assembled haplotypes can serve as references for the community and provide the basis of a structurally accurate genotyping graph of the complete MHC region.
    MeSH term(s) Humans ; Haplotypes ; Alleles ; Histocompatibility Antigens Class II/genetics ; Major Histocompatibility Complex/genetics ; HLA Antigens/genetics ; HLA-C Antigens/genetics
    Chemical Substances Histocompatibility Antigens Class II ; HLA Antigens ; HLA-C Antigens
    Language English
    Publishing date 2023-03-18
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 2845111-9
    ISSN 2059-2310 ; 2059-2302
    ISSN (online) 2059-2310
    ISSN 2059-2302
    DOI 10.1111/tan.15020
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: HLA-DPB1*13:01 associates with enhanced, and KIR2DS4*001 with diminished protection from developing severe COVID-19.

    Farias, Ticiana D J / Brugiapaglia, Silvia / Croci, Susanna / Magistroni, Paola / Curcio, Claudia / Zguro, Kristina / Fallerini, Chiara / Fava, Francesca / Pettini, Francesco / Kichula, Katherine M / Pollock, Nicholas R / Font-Porterias, Neus / Palmer, William H / Marin, Wesley M / Baldassarri, Margherita / Bruttini, Mirella / Hollenbach, Jill A / Hendricks, Audrey E / Meloni, Ilaria /
    Novelli, Francesco / Renieri, Alessandra / Furini, Simone / Norman, Paul J / Amoroso, Antonio

    HLA

    2023  Volume 103, Issue 1, Page(s) e15251

    Abstract: Extreme polymorphism of HLA and killer-cell immunoglobulin-like receptors (KIR) differentiates immune responses across individuals. Additional to T cell receptor interactions, subsets of HLA class I act as ligands for inhibitory and activating KIR, ... ...

    Abstract Extreme polymorphism of HLA and killer-cell immunoglobulin-like receptors (KIR) differentiates immune responses across individuals. Additional to T cell receptor interactions, subsets of HLA class I act as ligands for inhibitory and activating KIR, allowing natural killer (NK) cells to detect and kill infected cells. We investigated the impact of HLA and KIR polymorphism on the severity of COVID-19. High resolution HLA class I and II and KIR genotypes were determined from 403 non-hospitalized and 1575 hospitalized SARS-CoV-2 infected patients from Italy collected in 2020. We observed that possession of the activating KIR2DS4*001 allotype is associated with severe disease, requiring hospitalization (OR = 1.48, 95% CI 1.20-1.85, p
    MeSH term(s) Humans ; COVID-19/genetics ; SARS-CoV-2/genetics ; Alleles ; Receptors, KIR/genetics ; Genotype ; Autoantibodies/genetics ; HLA-DP beta-Chains
    Chemical Substances HLA-DPB1 antigen ; Receptors, KIR ; Autoantibodies ; KIR2DS4 protein, human ; HLA-DP beta-Chains
    Language English
    Publishing date 2023-10-18
    Publishing country England
    Document type Journal Article
    ZDB-ID 2845111-9
    ISSN 2059-2310 ; 2059-2302
    ISSN (online) 2059-2310
    ISSN 2059-2302
    DOI 10.1111/tan.15251
    Database MEDical Literature Analysis and Retrieval System OnLINE

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