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  1. Article ; Online: RNAPII-dependent ATM signaling at collisions with replication forks.

    Einig, Elias / Jin, Chao / Andrioletti, Valentina / Macek, Boris / Popov, Nikita

    Nature communications

    2023  Volume 14, Issue 1, Page(s) 5147

    Abstract: Deregulation of RNA Polymerase II (RNAPII) by oncogenic signaling leads to collisions of RNAPII with DNA synthesis machinery (transcription-replication conflicts, TRCs). TRCs can result in DNA damage and are thought to underlie genomic instability in ... ...

    Abstract Deregulation of RNA Polymerase II (RNAPII) by oncogenic signaling leads to collisions of RNAPII with DNA synthesis machinery (transcription-replication conflicts, TRCs). TRCs can result in DNA damage and are thought to underlie genomic instability in tumor cells. Here we provide evidence that elongating RNAPII nucleates activation of the ATM kinase at TRCs to stimulate DNA repair. We show the ATPase WRNIP1 associates with RNAPII and limits ATM activation during unperturbed cell cycle. WRNIP1 binding to elongating RNAPII requires catalytic activity of the ubiquitin ligase HUWE1. Mutation of HUWE1 induces TRCs, promotes WRNIP1 dissociation from RNAPII and binding to the replisome, stimulating ATM recruitment and activation at RNAPII. TRCs and translocation of WRNIP1 are rapidly induced in response to hydroxyurea treatment to activate ATM and facilitate subsequent DNA repair. We propose that TRCs can provide a controlled mechanism for stalling of replication forks and ATM activation, instrumental in cellular response to replicative stress.
    MeSH term(s) RNA Polymerase II ; Signal Transduction ; Mutation ; Cell Cycle ; Cell Division ; Hydrolases
    Chemical Substances RNA Polymerase II (EC 2.7.7.-) ; Hydrolases (EC 3.-)
    Language English
    Publishing date 2023-08-24
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2553671-0
    ISSN 2041-1723 ; 2041-1723
    ISSN (online) 2041-1723
    ISSN 2041-1723
    DOI 10.1038/s41467-023-40924-4
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Book ; Online ; Thesis: Regulation of the DNA Damage Response by the Ubiquitin System

    Xu, Wenshan [Verfasser] / Popov, Nikita [Gutachter]

    2022  

    Author's details Wenshan Xu ; Gutachter: Nikita Popov
    Keywords Biowissenschaften, Biologie ; Life Science, Biology
    Subject code sg570
    Language English
    Publisher Universität Würzburg
    Publishing place Würzburg
    Document type Book ; Online ; Thesis
    Database Digital theses on the web

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  3. Article ; Online: The dimeric deubiquitinase USP28 integrates 53BP1 and MYC functions to limit DNA damage.

    Jin, Chao / Einig, Elias / Xu, Wenshan / Kollampally, Ravi Babu / Schlosser, Andreas / Flentje, Michael / Popov, Nikita

    Nucleic acids research

    2024  Volume 52, Issue 6, Page(s) 3011–3030

    Abstract: DNA replication is a major source of endogenous DNA damage in tumor cells and a key target of cellular response to genotoxic stress. DNA replication can be deregulated by oncoproteins, such as transcription factor MYC, aberrantly activated in many human ... ...

    Abstract DNA replication is a major source of endogenous DNA damage in tumor cells and a key target of cellular response to genotoxic stress. DNA replication can be deregulated by oncoproteins, such as transcription factor MYC, aberrantly activated in many human cancers. MYC is stringently regulated by the ubiquitin system - for example, ubiquitination controls recruitment of the elongation factor PAF1c, instrumental in MYC activity. Curiously, a key MYC-targeting deubiquitinase USP28 also controls cellular response to DNA damage via the mediator protein 53BP1. USP28 forms stable dimers, but the biological role of USP28 dimerization is unknown. We show here that dimerization limits USP28 activity and restricts recruitment of PAF1c by MYC. Expression of monomeric USP28 stabilizes MYC and promotes PAF1c recruitment, leading to ectopic DNA synthesis and replication-associated DNA damage. USP28 dimerization is stimulated by 53BP1, which selectively binds USP28 dimers. Genotoxic stress diminishes 53BP1-USP28 interaction, promotes disassembly of USP28 dimers and stimulates PAF1c recruitment by MYC. This triggers firing of DNA replication origins during early response to genotoxins and exacerbates DNA damage. We propose that dimerization of USP28 prevents ectopic DNA replication at transcriptionally active chromatin to maintain genome stability.
    MeSH term(s) Humans ; DNA Damage ; Neoplasms ; Ubiquitination ; DNA/metabolism ; Deubiquitinating Enzymes/genetics ; Ubiquitin Thiolesterase/genetics ; Ubiquitin Thiolesterase/metabolism
    Chemical Substances DNA (9007-49-2) ; Deubiquitinating Enzymes (EC 3.4.19.12) ; Ubiquitin Thiolesterase (EC 3.4.19.12) ; USP28 protein, human
    Language English
    Publishing date 2024-01-07
    Publishing country England
    Document type Journal Article
    ZDB-ID 186809-3
    ISSN 1362-4962 ; 1362-4954 ; 0301-5610 ; 0305-1048
    ISSN (online) 1362-4962 ; 1362-4954
    ISSN 0301-5610 ; 0305-1048
    DOI 10.1093/nar/gkae004
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Book ; Online ; Thesis: Regulation of the Mevalonate Pathway by the Deubiquitinase USP28 in Squamous Cancer ; Gutachter: Almut Schulze, Grzegorz Sumara, Nikita Popov, Markus Diefenbacher

    Maier, Carina Ramona Verfasser] / [Schulze, Almut [Gutachter] / Sumara, Grzegorz [Gutachter] / Popov, Nikita [Gutachter] / Diefenbacher, Markus [Gutachter]

    2024  

    Author's details Carina Ramona Maier [verh. Hartmann
    Keywords Medizin, Gesundheit ; Medicine, Health
    Subject code sg610
    Language English
    Publisher Universität Würzburg
    Publishing place Würzburg
    Document type Book ; Online ; Thesis
    Database Digital theses on the web

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  5. Article ; Online: Trim33 masks a non-transcriptional function of E2f4 in replication fork progression.

    Rousseau, Vanessa / Einig, Elias / Jin, Chao / Horn, Julia / Riebold, Mathias / Poth, Tanja / Jarboui, Mohamed-Ali / Flentje, Michael / Popov, Nikita

    Nature communications

    2023  Volume 14, Issue 1, Page(s) 5143

    Abstract: Replicative stress promotes genomic instability and tumorigenesis but also presents an effective therapeutic endpoint, rationalizing detailed analysis of pathways that control DNA replication. We show here that the transcription factor E2f4 recruits the ... ...

    Abstract Replicative stress promotes genomic instability and tumorigenesis but also presents an effective therapeutic endpoint, rationalizing detailed analysis of pathways that control DNA replication. We show here that the transcription factor E2f4 recruits the DNA helicase Recql to facilitate progression of DNA replication forks upon drug- or oncogene-induced replicative stress. In unperturbed cells, the Trim33 ubiquitin ligase targets E2f4 for degradation, limiting its genomic binding and interactions with Recql. Replicative stress blunts Trim33-dependent ubiquitination of E2f4, which stimulates transient Recql recruitment to chromatin and facilitates recovery of DNA synthesis. In contrast, deletion of Trim33 induces chronic genome-wide recruitment of Recql and strongly accelerates DNA replication under stress, compromising checkpoint signaling and DNA repair. Depletion of Trim33 in Myc-overexpressing cells leads to accumulation of replication-associated DNA damage and delays Myc-driven tumorigenesis. We propose that the Trim33-E2f4-Recql axis controls progression of DNA replication forks along transcriptionally active chromatin to maintain genome integrity.
    MeSH term(s) Humans ; Genetic Predisposition to Disease ; RecQ Helicases ; Chromatin/genetics ; Personal Protective Equipment ; Carcinogenesis ; Cell Transformation, Neoplastic
    Chemical Substances RecQ Helicases (EC 3.6.4.12) ; Chromatin
    Language English
    Publishing date 2023-08-23
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2553671-0
    ISSN 2041-1723 ; 2041-1723
    ISSN (online) 2041-1723
    ISSN 2041-1723
    DOI 10.1038/s41467-023-40847-0
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Radiation thermal effect of a fire spilling fuel-air mixtures on a person

    Penner Yana / Yakovlev Vyacheslav / Popov Nikita / Antonova Margarita / Borodiņecs Anatolijs

    E3S Web of Conferences, Vol 140, p

    2019  Volume 08012

    Abstract: In the modern world, it is especially important to provide the population and industries with energy, which is necessary to maintain a consistently high quality of life. Often, the process of generating energy is associated with a certain risk to ... ...

    Abstract In the modern world, it is especially important to provide the population and industries with energy, which is necessary to maintain a consistently high quality of life. Often, the process of generating energy is associated with a certain risk to personnel and the public when using various types of fuel, often with fire hazardous properties. For each fire damaging factor, for example, for thermal radiation, toxicity of combustion products, smoke, and elevated temperature, the probability of human injury can be calculated. In this paper, the probability of a person being damaged by thermal radiation in a fire spilling a fuel-air mixture is calculated. A spill fire begins by igniting the vapors of spilled hydrocarbon fuel on an open surface. The calculation was carried out according to three methods, one of which takes into account the movement of a person away from the epicenter of the fire. The dependence of the heat flux density on the distance from the center of the fire is given. Based on calculations of the safe distance from the center of the fire and the values of thermal radiation using the Matlab software environment, the optimal method for determining the probability of human injury in case of a fire spill of an oil product was selected, and it was also concluded that it can be used in case of using high-energy fuel.
    Keywords Environmental sciences ; GE1-350
    Subject code 690
    Language English
    Publishing date 2019-01-01T00:00:00Z
    Publisher EDP Sciences
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  7. Article ; Online: The Endothelial Landscape and Its Role in Von Hippel-Lindau Disease.

    de Rojas-P, Isabel / Albiñana, Virginia / Taranets, Lyudmyla / Recio-Poveda, Lucía / Cuesta, Angel M / Popov, Nikita / Kronenberger, Thales / Botella, Luisa M

    Cells

    2021  Volume 10, Issue 9

    Abstract: Von Hippel-Lindau disease (VHL) is a rare hereditary disease characterized by the predisposal to develop different types of highly vascularized tumors. VHL patients carry ... ...

    Abstract Von Hippel-Lindau disease (VHL) is a rare hereditary disease characterized by the predisposal to develop different types of highly vascularized tumors. VHL patients carry a
    MeSH term(s) Case-Control Studies ; Cell Adhesion ; Cell Movement ; Cell Proliferation ; Cells, Cultured ; Endothelial Cells/immunology ; Endothelial Cells/metabolism ; Endothelial Cells/pathology ; Gene Expression Regulation ; Genetic Predisposition to Disease ; Humans ; Mutation ; Neovascularization, Pathologic/genetics ; Oxidative Stress ; Phenotype ; Signal Transduction ; Transcriptome ; Von Hippel-Lindau Tumor Suppressor Protein/genetics ; von Hippel-Lindau Disease/genetics ; von Hippel-Lindau Disease/immunology ; von Hippel-Lindau Disease/metabolism ; von Hippel-Lindau Disease/pathology
    Chemical Substances Von Hippel-Lindau Tumor Suppressor Protein (EC 2.3.2.27) ; VHL protein, human (EC 6.3.2.-)
    Language English
    Publishing date 2021-09-04
    Publishing country Switzerland
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2661518-6
    ISSN 2073-4409 ; 2073-4409
    ISSN (online) 2073-4409
    ISSN 2073-4409
    DOI 10.3390/cells10092313
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Regulating Fbw7 on the road to cancer.

    Xu, Wenshan / Taranets, Lyudmyla / Popov, Nikita

    Seminars in cancer biology

    2016  Volume 36, Page(s) 62–70

    Abstract: The F-box protein Fbw7 targets for degradation critical cellular regulators, thereby controlling essential processes in cellular homeostasis, including cell cycle, differentiation and apoptosis. Most Fbw7 substrates are strongly associated with ... ...

    Abstract The F-box protein Fbw7 targets for degradation critical cellular regulators, thereby controlling essential processes in cellular homeostasis, including cell cycle, differentiation and apoptosis. Most Fbw7 substrates are strongly associated with tumorigenesis and Fbw7 can either suppress or promote tumor development in mouse models. Fbw7 activity is controlled at different levels, resulting in specific and tunable regulation of the abundance and activity of its substrates. Here we highlight recent studies on the role of Fbw7 in controlling tumorigenesis and on the mechanisms that modulate Fbw7 function.
    MeSH term(s) Animals ; Cell Cycle Proteins/chemistry ; Cell Cycle Proteins/genetics ; Cell Cycle Proteins/metabolism ; Cell Transformation, Neoplastic/genetics ; Cell Transformation, Neoplastic/metabolism ; F-Box Proteins/chemistry ; F-Box Proteins/genetics ; F-Box Proteins/metabolism ; F-Box-WD Repeat-Containing Protein 7 ; Gene Expression Regulation, Neoplastic ; Homeostasis ; Humans ; Molecular Targeted Therapy ; Neoplasms/drug therapy ; Neoplasms/etiology ; Neoplasms/metabolism ; Neoplasms/pathology ; Protein Binding ; Protein Multimerization ; Protein Transport ; Proteolysis ; Signal Transduction ; Substrate Specificity ; Ubiquitin-Protein Ligases/chemistry ; Ubiquitin-Protein Ligases/genetics ; Ubiquitin-Protein Ligases/metabolism ; Ubiquitination
    Chemical Substances Cell Cycle Proteins ; F-Box Proteins ; F-Box-WD Repeat-Containing Protein 7 ; FBXW7 protein, human ; Ubiquitin-Protein Ligases (EC 2.3.2.27)
    Language English
    Publishing date 2016-02
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Review
    ZDB-ID 1033980-2
    ISSN 1096-3650 ; 1044-579X
    ISSN (online) 1096-3650
    ISSN 1044-579X
    DOI 10.1016/j.semcancer.2015.09.005
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: A conformational switch regulates the ubiquitin ligase HUWE1.

    Sander, Bodo / Xu, Wenshan / Eilers, Martin / Popov, Nikita / Lorenz, Sonja

    eLife

    2017  Volume 6

    Abstract: The human ubiquitin ligase HUWE1 has key roles in tumorigenesis, yet it is unkown how its activity is regulated. We present the crystal structure of a C-terminal part of HUWE1, including the catalytic domain, and reveal an asymmetric auto-inhibited dimer. ...

    Abstract The human ubiquitin ligase HUWE1 has key roles in tumorigenesis, yet it is unkown how its activity is regulated. We present the crystal structure of a C-terminal part of HUWE1, including the catalytic domain, and reveal an asymmetric auto-inhibited dimer. We show that HUWE1 dimerizes in solution and self-associates in cells, and that both occurs through the crystallographic dimer interface. We demonstrate that HUWE1 is inhibited in cells and that it can be activated by disruption of the dimer interface. We identify a conserved segment in HUWE1 that counteracts dimer formation by associating with the dimerization region intramolecularly. Our studies reveal, intriguingly, that the tumor suppressor p14ARF binds to this segment and may thus shift the conformational equilibrium of HUWE1 toward the inactive state. We propose a model, in which the activity of HUWE1 underlies conformational control in response to physiological cues-a mechanism that may be exploited for cancer therapy.
    MeSH term(s) Crystallography, X-Ray ; Humans ; Models, Molecular ; Protein Binding ; Protein Conformation ; Protein Multimerization ; Tumor Suppressor Protein p14ARF/metabolism ; Tumor Suppressor Proteins ; Ubiquitin-Protein Ligases/chemistry ; Ubiquitin-Protein Ligases/metabolism
    Chemical Substances Tumor Suppressor Protein p14ARF ; Tumor Suppressor Proteins ; HUWE1 protein, human (EC 2.3.2.26) ; Ubiquitin-Protein Ligases (EC 2.3.2.27)
    Language English
    Publishing date 2017-02-14
    Publishing country England
    Document type Journal Article
    ZDB-ID 2687154-3
    ISSN 2050-084X ; 2050-084X
    ISSN (online) 2050-084X
    ISSN 2050-084X
    DOI 10.7554/eLife.21036
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article: Fbw7 and Usp28 - enemies and allies.

    Taranets, Lyudmyla / Zhu, Jing / Xu, Wenshan / Popov, Nikita

    Molecular & cellular oncology

    2015  Volume 2, Issue 3, Page(s) e995041

    Abstract: The Usp28 deubiquitinase antagonizes Fbw7-mediated turnover of multiple oncoproteins, including Myc, Jun, and Notch, and promotes tumorigenesis in the intestine. Our recent study reveals that Usp28 also counteracts autocatalytic ubiquitination of Fbw7, ... ...

    Abstract The Usp28 deubiquitinase antagonizes Fbw7-mediated turnover of multiple oncoproteins, including Myc, Jun, and Notch, and promotes tumorigenesis in the intestine. Our recent study reveals that Usp28 also counteracts autocatalytic ubiquitination of Fbw7, suggesting a complex role for Usp28 in the regulation of Fbw7 activity and tumor development.
    Language English
    Publishing date 2015-01-23
    Publishing country United States
    Document type Journal Article
    ISSN 2372-3556
    ISSN 2372-3556
    DOI 10.4161/23723556.2014.995041
    Database MEDical Literature Analysis and Retrieval System OnLINE

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