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  1. Article: A domain-based vaccine construct against SARS-CoV-2, the causative agent of COVID-19 pandemic: development of self-amplifying mRNA and peptide vaccines.

    Pourseif, Mohammad Mostafa / Parvizpour, Sepideh / Jafari, Behzad / Dehghani, Jaber / Naghili, Behrouz / Omidi, Yadollah

    BioImpacts : BI

    2020  Volume 11, Issue 1, Page(s) 65–84

    Abstract: Introduction: ...

    Abstract Introduction:
    Language English
    Publishing date 2020-12-10
    Publishing country Iran
    Document type Journal Article
    ZDB-ID 2604624-6
    ISSN 2228-5660 ; 2228-5652
    ISSN (online) 2228-5660
    ISSN 2228-5652
    DOI 10.34172/bi.2021.11
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Modulatory Role of Vaginal-Isolated Lactococcus lactis on the Expression of miR-21, miR-200b, and TLR-4 in CAOV-4 Cells and In Silico Revalidation

    Rahbar Saadat, Yalda / Pourseif, Mohammad Mostafa / Zununi Vahed, Sepideh / Barzegari, Abolfazl / Omidi, Yadollah / Barar, Jaleh

    Probiotics and antimicrobial proteins. 2020 Sept., v. 12, no. 3

    2020  

    Abstract: Ovarian cancer (OC) is a leading cause of death among women worldwide. Various evidences suggest that oncomiRs and Toll-like receptor 4 (TLR-4) signaling pathways appear to be key players in the initiation and progression of OC. It seems there exists a ... ...

    Abstract Ovarian cancer (OC) is a leading cause of death among women worldwide. Various evidences suggest that oncomiRs and Toll-like receptor 4 (TLR-4) signaling pathways appear to be key players in the initiation and progression of OC. It seems there exists a continuous intercommunication between cancer cells and normal microbiota of the vagina. The biological impacts of vaginal isolated lactococcus lactis on CAOV-4 cells were investigated using several molecular biology experiments, including flow cytometry, DAPI staining, DNA ladder, and scratch assay. The expression of microRNAs (miRNAs/miRs) 21, 200b, and TLR-4 in the CAOV-4 cells was also evaluated by the real-time RT-PCR assay. Furthermore, an integrative in silico analysis was conducted using normalized web-available microarray data (GSE14407) to revalidate the experimental findings and identify potential biomarkers in ovarian cancer. Protein-protein interactions (PPIs) network was studied by means of the STRING database using Cytoscape v3.6.1. The miRNA target genes were identified using the dbDEMC v2.0, miRTarBase, and miRDB databases. Our data demonstrated that L. lactis probiotic candidate downregulates TLR-4, miR-21, and miR-200b expression levels, which correlates with induction of apoptosis as confirmed by DAPI staining, DNA ladder assay, annexin V/PI staining, and inhibition of migration validated by scratch assay. By in silico analysis, several targets (miR-17-5p-BCL2, miR-21-5p-MKNK2, miR-129-5p-CDK6) were identified, while BCL2, CCNB1, and VEGFA were found as the hub proteins in the miRNA-target and PPI networks. Further, downregulation of the TLR-4, miR-21, and miR-200b was partially validated by the in silico analysis. Based on our findings, the vaginal isolated probiotic strain presents great potential to control the ovarian cancer which may provide beneficial impact on the clinical management of ovarian cancer.
    Keywords 4',6-diamidino-2-phenylindole ; DNA ; Lactococcus lactis ; Toll-like receptor 4 ; animal ovaries ; apoptosis ; biomarkers ; computer simulation ; databases ; flow cytometry ; gene expression regulation ; genes ; microRNA ; microarray technology ; molecular biology ; neoplasm cells ; ovarian neoplasms ; probiotics ; protein-protein interactions ; quantitative polymerase chain reaction ; reverse transcriptase polymerase chain reaction ; signal transduction ; staining ; vagina ; women
    Language English
    Dates of publication 2020-09
    Size p. 1083-1096.
    Publishing place Springer US
    Document type Article
    ZDB-ID 2487792-X
    ISSN 1867-1314 ; 1867-1306
    ISSN (online) 1867-1314
    ISSN 1867-1306
    DOI 10.1007/s12602-019-09596-9
    Database NAL-Catalogue (AGRICOLA)

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  3. Article: A multi-method and structure-based in silico vaccine designing against

    Pourseif, Mohammad Mostafa / Yousefpour, Mitra / Aminianfar, Mohammad / Moghaddam, Gholamali / Nematollahi, Ahmad

    BioImpacts : BI

    2019  Volume 9, Issue 3, Page(s) 131–144

    Abstract: Introduction: ...

    Abstract Introduction:
    Language English
    Publishing date 2019-03-08
    Publishing country Iran
    Document type Journal Article
    ZDB-ID 2604624-6
    ISSN 2228-5660 ; 2228-5652
    ISSN (online) 2228-5660
    ISSN 2228-5652
    DOI 10.15171/bi.2019.18
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Current status and future prospective of vaccine development against Echinococcus granulosus

    Pourseif, Mohammad Mostafa / Gholamali Moghaddam / Nazli Saeedi / Abolfazl Barzegari / Jaber Dehghani / Yadollah Omidi

    Biologicals. 2017,

    2017  

    Abstract: Cystic echinococcosis (CE) is one of the most important zoonotic parasite diseases in human, livestock and wildlife worldwide. Development of effective vaccines against CE appears to be the most promising strategy to control this infectious disease. Use ... ...

    Abstract Cystic echinococcosis (CE) is one of the most important zoonotic parasite diseases in human, livestock and wildlife worldwide. Development of effective vaccines against CE appears to be the most promising strategy to control this infectious disease. Use of potential livestock and canine vaccines against larval and adult stage of E. granulosus life cycle may be the key for the production of powerful vaccines. Some progress has been accomplished on development of vaccines against hydatidosis using empirical approaches, while such immunotherapies often fail to induce adequate immune responses. Therefore, it is of great interest to identify antigens (Ags) with high immunogenicity and develop effective vaccines and adjuvant constructs against CE. To this end, various tools can be applied, including immune-based genomics and proteomics, immunoinformatics, systems vaccinology and mathematical/computational modeling. In this review, we aimed to provide comprehensive insights upon current status of vaccination trials against E. granulosus, and also articulate some perspectives on production of novel anti-CE vaccines. Use of novel prospective technologies is also discussed to highlight the importance of development and advancement of the next generation vaccines against E. granulosus.
    Keywords Echinococcus granulosus ; adjuvants ; adults ; antigens ; dogs ; echinococcosis ; genomics ; humans ; immune response ; immunoinformatics ; infectious diseases ; larvae ; livestock ; models ; parasites ; proteomics ; vaccination ; vaccine development ; vaccines ; wildlife
    Language English
    Size p. .
    Publishing place Elsevier Ltd
    Document type Article
    Note Pre-press version
    ZDB-ID 1017370-5
    ISSN 1095-8320 ; 1045-1056
    ISSN (online) 1095-8320
    ISSN 1045-1056
    DOI 10.1016/j.biologicals.2017.10.003
    Database NAL-Catalogue (AGRICOLA)

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  5. Article ; Online: Modulatory Role of Vaginal-Isolated Lactococcus lactis on the Expression of miR-21, miR-200b, and TLR-4 in CAOV-4 Cells and In Silico Revalidation.

    Rahbar Saadat, Yalda / Pourseif, Mohammad Mostafa / Zununi Vahed, Sepideh / Barzegari, Abolfazl / Omidi, Yadollah / Barar, Jaleh

    Probiotics and antimicrobial proteins

    2019  Volume 12, Issue 3, Page(s) 1083–1096

    Abstract: Ovarian cancer (OC) is a leading cause of death among women worldwide. Various evidences suggest that oncomiRs and Toll-like receptor 4 (TLR-4) signaling pathways appear to be key players in the initiation and progression of OC. It seems there exists a ... ...

    Abstract Ovarian cancer (OC) is a leading cause of death among women worldwide. Various evidences suggest that oncomiRs and Toll-like receptor 4 (TLR-4) signaling pathways appear to be key players in the initiation and progression of OC. It seems there exists a continuous intercommunication between cancer cells and normal microbiota of the vagina. The biological impacts of vaginal isolated lactococcus lactis on CAOV-4 cells were investigated using several molecular biology experiments, including flow cytometry, DAPI staining, DNA ladder, and scratch assay. The expression of microRNAs (miRNAs/miRs) 21, 200b, and TLR-4 in the CAOV-4 cells was also evaluated by the real-time RT-PCR assay. Furthermore, an integrative in silico analysis was conducted using normalized web-available microarray data (GSE14407) to revalidate the experimental findings and identify potential biomarkers in ovarian cancer. Protein-protein interactions (PPIs) network was studied by means of the STRING database using Cytoscape v3.6.1. The miRNA target genes were identified using the dbDEMC v2.0, miRTarBase, and miRDB databases. Our data demonstrated that L. lactis probiotic candidate downregulates TLR-4, miR-21, and miR-200b expression levels, which correlates with induction of apoptosis as confirmed by DAPI staining, DNA ladder assay, annexin V/PI staining, and inhibition of migration validated by scratch assay. By in silico analysis, several targets (miR-17-5p-BCL2, miR-21-5p-MKNK2, miR-129-5p-CDK6) were identified, while BCL2, CCNB1, and VEGFA were found as the hub proteins in the miRNA-target and PPI networks. Further, downregulation of the TLR-4, miR-21, and miR-200b was partially validated by the in silico analysis. Based on our findings, the vaginal isolated probiotic strain presents great potential to control the ovarian cancer which may provide beneficial impact on the clinical management of ovarian cancer.
    MeSH term(s) Apoptosis ; Cell Line, Tumor ; Female ; Gene Expression ; Humans ; Lactococcus lactis ; MicroRNAs/metabolism ; Probiotics ; Toll-Like Receptor 4/metabolism ; Vagina/metabolism ; Vagina/microbiology
    Chemical Substances MIRN200 microRNA, human ; MIRN21 microRNA, human ; MicroRNAs ; TLR4 protein, human ; Toll-Like Receptor 4
    Language English
    Publishing date 2019-12-03
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2487792-X
    ISSN 1867-1314 ; 1867-1306
    ISSN (online) 1867-1314
    ISSN 1867-1306
    DOI 10.1007/s12602-019-09596-9
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Current status and future prospective of vaccine development against Echinococcus granulosus.

    Pourseif, Mohammad Mostafa / Moghaddam, Gholamali / Saeedi, Nazli / Barzegari, Abolfazl / Dehghani, Jaber / Omidi, Yadollah

    Biologicals : journal of the International Association of Biological Standardization

    2017  Volume 51, Page(s) 1–11

    Abstract: Cystic echinococcosis (CE) is one of the most important zoonotic parasite diseases in human, livestock, and wildlife worldwide. Development of effective vaccines against CE appears to be the most promising strategy to control this infectious disease. Use ...

    Abstract Cystic echinococcosis (CE) is one of the most important zoonotic parasite diseases in human, livestock, and wildlife worldwide. Development of effective vaccines against CE appears to be the most promising strategy to control this infectious disease. Use of potential livestock and canine vaccines against the larval and adult stage of E. granulosus life cycle may be the key to the production of powerful vaccines. Some progress has been accomplished in the development of vaccines against hydatidosis using empirical approaches, while such immunotherapies often fail to induce adequate immune responses. Therefore, it is of great interest to identify antigens (Ags) with high immunogenicity and develop effective vaccines and adjuvant constructs against CE. To this end, various tools can be applied, including immune-based genomics and proteomics, immunoinformatics, systems vaccinology and mathematical/computational modeling. In this review, we aimed to provide comprehensive insights upon the current status of vaccination trials against E. granulosus, and also articulate some perspectives on the production of novel anti-CE vaccines. Use of novel prospective technologies is also discussed to highlight the importance of development and advancement of the next generation vaccines against E. granulosus.
    MeSH term(s) Animals ; Echinococcosis/immunology ; Echinococcosis/parasitology ; Echinococcosis/prevention & control ; Echinococcus granulosus/immunology ; Host-Parasite Interactions/immunology ; Humans ; Prospective Studies ; Vaccines/administration & dosage ; Vaccines/immunology ; Zoonoses/immunology ; Zoonoses/parasitology
    Chemical Substances Vaccines
    Language English
    Publishing date 2017-11-03
    Publishing country England
    Document type Journal Article ; Review
    ZDB-ID 1017370-5
    ISSN 1095-8320 ; 1045-1056
    ISSN (online) 1095-8320
    ISSN 1045-1056
    DOI 10.1016/j.biologicals.2017.10.003
    Database MEDical Literature Analysis and Retrieval System OnLINE

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