LIVIVO - The Search Portal for Life Sciences

zur deutschen Oberfläche wechseln
Advanced search

Search results

Result 1 - 8 of total 8

Search options

  1. Article: Impact of Lytic Phages on Phosphorus- vs. Nitrogen-Limited Marine Microbes.

    Pourtois, Julie / Tarnita, Corina E / Bonachela, Juan A

    Frontiers in microbiology

    2020  Volume 11, Page(s) 221

    Abstract: Lytic viruses kill almost 20% of marine bacteria every day, re-routing nutrients away from the higher trophic levels of the marine food web and back in the microbial loop. Importantly, the effect of this inflow of key elements on the ecosystem depends on ...

    Abstract Lytic viruses kill almost 20% of marine bacteria every day, re-routing nutrients away from the higher trophic levels of the marine food web and back in the microbial loop. Importantly, the effect of this inflow of key elements on the ecosystem depends on the nutrient requirements of bacteria as well as on the elemental composition of the viruses that infect them. Therefore, the influence of viruses on the ecosystem could vary depending on which nutrient is limiting. In this paper, we considered an existing multitrophic model (nutrient, bacteria, zooplankton, and viruses) that accounts for nitrogen limitation, and developed a phosphorus-limited version to assess whether the limiting nutrient alters the role of viruses in the ecosystem. For both versions, we evaluated the stationary state of the system with and without viruses. In agreement with existing results, nutrient release increased with viruses for nitrogen-limited systems, while zooplankton abundance and export to higher trophic levels decreased. We found this to be true also for phosphorus-limited systems, although nutrient release increased less than in nitrogen-limited systems. The latter supports a nutrient-specific response of the ecosystem to viruses. Bacterial concentration decreased in the phosphorus-limited system but increased in most nitrogen-limited cases due to a switch from mostly bottom-up to entirely top-down control by viruses. Our results also show that viral concentration is best predicted by a power-law of bacterial concentration with exponent different from 1. Finally, we found a positive correlation between carbon export and viruses regardless of the limiting nutrient, which led us to suggest viral abundance as a predictor of carbon sink.
    Language English
    Publishing date 2020-02-21
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2587354-4
    ISSN 1664-302X
    ISSN 1664-302X
    DOI 10.3389/fmicb.2020.00221
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  2. Article ; Online: Targeted deletion of Pf prophages from diverse

    Schmidt, Amelia K / Schwartzkopf, Caleb M / Pourtois, Julie D / Burgener, Elizabeth B / Faith, Dominick R / Joyce, Alex / Lamma, Tyrza / Kumar, Geetha / Bollyky, Paul L / Secor, Patrick R

    Journal of bacteriology

    2024  , Page(s) e0040223

    Abstract: Pseudomonas ... ...

    Abstract Pseudomonas aeruginosa
    Language English
    Publishing date 2024-04-30
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2968-3
    ISSN 1098-5530 ; 0021-9193
    ISSN (online) 1098-5530
    ISSN 0021-9193
    DOI 10.1128/jb.00402-23
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  3. Article: Targeted deletion of Pf prophages from diverse

    Schmidt, Amelia K / Schwartzkopf, Caleb M / Pourtois, Julie D / Burgener, Elizabeth / Faith, Dominick R / Joyce, Alex / Lamma, Tyrza / Kumar, Geetha / Bollyky, Paul L / Secor, Patrick R

    bioRxiv : the preprint server for biology

    2023  

    Abstract: Pseudomonas ... ...

    Abstract Pseudomonas aeruginosa
    Language English
    Publishing date 2023-11-19
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2023.11.19.567716
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  4. Article: Filamentous Bacteriophages and the Competitive Interaction between Pseudomonas aeruginosa Strains under Antibiotic Treatment: a Modeling Study.

    Pourtois, Julie D / Kratochvil, Michael J / Chen, Qingquan / Haddock, Naomi L / Burgener, Elizabeth B / De Leo, Giulio A / Bollyky, Paul L

    mSystems

    2021  Volume 6, Issue 3, Page(s) e0019321

    Abstract: Pseudomonas aeruginosa ( ...

    Abstract Pseudomonas aeruginosa (
    Language English
    Publishing date 2021-06-22
    Publishing country United States
    Document type Journal Article
    ISSN 2379-5077
    ISSN 2379-5077
    DOI 10.1128/mSystems.00193-21
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  5. Article: Rapid assessment of changes in phage bioactivity using dynamic light scattering.

    Dharmaraj, Tejas / Kratochvil, Michael J / Pourtois, Julie D / Chen, Qingquan / Hajfathalian, Maryam / Hargil, Aviv / Lin, Yung-Hao / Evans, Zoe / Oromí-Bosch, Agnès / Berry, Joel D / McBride, Robert / Haddock, Naomi L / Holman, Derek R / van Belleghem, Jonas D / Chang, Tony H / Barr, Jeremy J / Lavigne, Rob / Heilshorn, Sarah C / Blankenberg, Francis G /
    Bollyky, Paul L

    bioRxiv : the preprint server for biology

    2023  

    Abstract: Extensive efforts are underway to develop bacteriophages as therapies against antibiotic-resistant bacteria. However, these efforts are confounded by the instability of phage preparations and a lack of suitable tools to assess active phage concentrations ...

    Abstract Extensive efforts are underway to develop bacteriophages as therapies against antibiotic-resistant bacteria. However, these efforts are confounded by the instability of phage preparations and a lack of suitable tools to assess active phage concentrations over time. Here, we use Dynamic Light Scattering (DLS) to measure changes in phage physical state in response to environmental factors and time, finding that phages tend to decay and form aggregates and that the degree of aggregation can be used to predict phage bioactivity. We then use DLS to optimize phage storage conditions for phages from human clinical trials, predict bioactivity in 50-year-old archival stocks, and evaluate phage samples for use in a phage therapy/wound infection model. We also provide a web-application (Phage-ELF) to facilitate DLS studies of phages. We conclude that DLS provides a rapid, convenient, and non-destructive tool for quality control of phage preparations in academic and commercial settings.
    Language English
    Publishing date 2023-07-02
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2023.07.02.547396
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  6. Article ; Online: Climatic, land-use and socio-economic factors can predict malaria dynamics at fine spatial scales relevant to local health actors: Evidence from rural Madagascar.

    Pourtois, Julie D / Tallam, Krti / Jones, Isabel / Hyde, Elizabeth / Chamberlin, Andrew J / Evans, Michelle V / Ihantamalala, Felana A / Cordier, Laura F / Razafinjato, Bénédicte R / Rakotonanahary, Rado J L / Tsirinomen'ny Aina, Andritiana / Soloniaina, Patrick / Raholiarimanana, Sahondraritera H / Razafinjato, Celestin / Bonds, Matthew H / De Leo, Giulio A / Sokolow, Susanne H / Garchitorena, Andres

    PLOS global public health

    2023  Volume 3, Issue 2, Page(s) e0001607

    Abstract: While much progress has been achieved over the last decades, malaria surveillance and control remain a challenge in countries with limited health care access and resources. High-resolution predictions of malaria incidence using routine surveillance data ... ...

    Abstract While much progress has been achieved over the last decades, malaria surveillance and control remain a challenge in countries with limited health care access and resources. High-resolution predictions of malaria incidence using routine surveillance data could represent a powerful tool to health practitioners by targeting malaria control activities where and when they are most needed. Here, we investigate the predictors of spatio-temporal malaria dynamics in rural Madagascar, estimated from facility-based passive surveillance data. Specifically, this study integrates climate, land-use, and representative household survey data to explain and predict malaria dynamics at a high spatial resolution (i.e., by Fokontany, a cluster of villages) relevant to health care practitioners. Combining generalized linear mixed models (GLMM) and path analyses, we found that socio-economic, land use and climatic variables are all important predictors of monthly malaria incidence at fine spatial scales, via both direct and indirect effects. In addition, out-of-sample predictions from our model were able to identify 58% of the Fokontany in the top quintile for malaria incidence and account for 77% of the variation in the Fokontany incidence rank. These results suggest that it is possible to build a predictive framework using environmental and social predictors that can be complementary to standard surveillance systems and help inform control strategies by field actors at local scales.
    Language English
    Publishing date 2023-02-22
    Publishing country United States
    Document type Journal Article
    ISSN 2767-3375
    ISSN (online) 2767-3375
    DOI 10.1371/journal.pgph.0001607
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  7. Article ; Online: Rapid assessment of changes in phage bioactivity using dynamic light scattering.

    Dharmaraj, Tejas / Kratochvil, Michael J / Pourtois, Julie D / Chen, Qingquan / Hajfathalian, Maryam / Hargil, Aviv / Lin, Yung-Hao / Evans, Zoe / Oromí-Bosch, Agnès / Berry, Joel D / McBride, Robert / Haddock, Naomi L / Holman, Derek R / van Belleghem, Jonas D / Chang, Tony H / Barr, Jeremy J / Lavigne, Rob / Heilshorn, Sarah C / Blankenberg, Francis G /
    Bollyky, Paul L

    PNAS nexus

    2023  Volume 2, Issue 12, Page(s) pgad406

    Abstract: Extensive efforts are underway to develop bacteriophages as therapies against antibiotic-resistant bacteria. However, these efforts are confounded by the instability of phage preparations and a lack of suitable tools to assess active phage concentrations ...

    Abstract Extensive efforts are underway to develop bacteriophages as therapies against antibiotic-resistant bacteria. However, these efforts are confounded by the instability of phage preparations and a lack of suitable tools to assess active phage concentrations over time. In this study, we use dynamic light scattering (DLS) to measure changes in phage physical state in response to environmental factors and time, finding that phages tend to decay and form aggregates and that the degree of aggregation can be used to predict phage bioactivity. We then use DLS to optimize phage storage conditions for phages from human clinical trials, predict bioactivity in 50-y-old archival stocks, and evaluate phage samples for use in a phage therapy/wound infection model. We also provide a web application (Phage-Estimator of Lytic Function) to facilitate DLS studies of phages. We conclude that DLS provides a rapid, convenient, and nondestructive tool for quality control of phage preparations in academic and commercial settings.
    Language English
    Publishing date 2023-11-27
    Publishing country England
    Document type Journal Article
    ISSN 2752-6542
    ISSN (online) 2752-6542
    DOI 10.1093/pnasnexus/pgad406
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  8. Article ; Online: Pf Bacteriophage and Their Impact on Pseudomonas Virulence, Mammalian Immunity, and Chronic Infections.

    Secor, Patrick R / Burgener, Elizabeth B / Kinnersley, M / Jennings, Laura K / Roman-Cruz, Valery / Popescu, Medeea / Van Belleghem, Jonas D / Haddock, Naomi / Copeland, Conner / Michaels, Lia A / de Vries, Christiaan R / Chen, Qingquan / Pourtois, Julie / Wheeler, Travis J / Milla, Carlos E / Bollyky, Paul L

    Frontiers in immunology

    2020  Volume 11, Page(s) 244

    Abstract: Pf bacteriophage are temperate phages that infect the ... ...

    Abstract Pf bacteriophage are temperate phages that infect the bacterium
    MeSH term(s) Animals ; Bacteriophages/physiology ; Biofilms ; Chronic Disease ; Drug Resistance, Microbial ; Humans ; Mammals ; Pseudomonas Infections/immunology ; Pseudomonas Infections/transmission ; Pseudomonas Infections/virology ; Pseudomonas aeruginosa/physiology ; Virulence
    Language English
    Publishing date 2020-02-21
    Publishing country Switzerland
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Review
    ZDB-ID 2606827-8
    ISSN 1664-3224 ; 1664-3224
    ISSN (online) 1664-3224
    ISSN 1664-3224
    DOI 10.3389/fimmu.2020.00244
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

To top