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  1. Article: Isometric Immersions and the Waving of Flags.

    Bauer, Martin / Møller-Andersen, Jakob / Preston, Stephen C

    Archive for rational mechanics and analysis

    2024  Volume 248, Issue 3, Page(s) 38

    Abstract: In this article we propose a novel geometric model to study the motion of a physical flag. In our approach, a flag is viewed as an isometric immersion from the square with values ... ...

    Abstract In this article we propose a novel geometric model to study the motion of a physical flag. In our approach, a flag is viewed as an isometric immersion from the square with values in
    Language English
    Publishing date 2024-04-16
    Publishing country Germany
    Document type Journal Article
    ZDB-ID 1458447-5
    ISSN 1432-0673 ; 0003-9527
    ISSN (online) 1432-0673
    ISSN 0003-9527
    DOI 10.1007/s00205-024-01978-w
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: High resolution parallel sequencing reveals multistrain Campylobacter in broiler chicken flocks testing 'negative' by conventional culture methods: implications for control of Campylobacter infection.

    Colles, Frances M / Karasova, Daniela / Crhanova, Magdalena / Preston, Stephen G / Smith, Adrian L / Dawkins, Marian S / Rychlik, Ivan / Gebhardt-Henrich, Sabine G

    Poultry science

    2022  Volume 101, Issue 10, Page(s) 102048

    Abstract: Contaminated chicken meat is a major source of human Campylobacteriosis and rates of infection remain high, despite efforts to limit the colonisation of broiler (meat) chicken flocks on farms. Using conventional testing methods of culture or qPCR, ... ...

    Abstract Contaminated chicken meat is a major source of human Campylobacteriosis and rates of infection remain high, despite efforts to limit the colonisation of broiler (meat) chicken flocks on farms. Using conventional testing methods of culture or qPCR, Campylobacter is typically detected amongst broiler flocks from 3 wk of age, leading to the assumption that infection is introduced horizontally into chicken rearing houses at this time. In this study, we use parallel sequencing of a fragment of the Campylobacter outer membrane protein, encoded by the porA gene, to test for presence of Campylobacter DNA amongst fresh fecal samples collected from broiler flocks aged 23 to 28 d. Campylobacter DNA was detected in all of the 290 samples tested using the porA target, and in 48% of samples using 16S bacterial profiling, irrespective of whether or not Campylobacter could be detected using conventional qPCR thresholds. A single porAf2 variant was predominant among flocks that would be determined to be Campylobacter 'positive' by conventional means, but a diverse pattern was seen among flocks that were Campylobacter 'negative'. The ability to routinely detect low levels of Campylobacter amongst broiler flocks at a much earlier age than would conventionally be identified requires a re-examination of how and when biosecurity measures are best applied for live birds. In addition, it may be useful to investigate why single Campylobacter variants proliferate in some broiler flocks and not others.
    MeSH term(s) Animals ; Campylobacter/genetics ; Campylobacter Infections/diagnosis ; Campylobacter Infections/microbiology ; Campylobacter Infections/veterinary ; Chickens/microbiology ; Membrane Proteins ; Poultry Diseases/diagnosis ; Poultry Diseases/microbiology
    Chemical Substances Membrane Proteins
    Language English
    Publishing date 2022-07-09
    Publishing country England
    Document type Journal Article
    ZDB-ID 242586-5
    ISSN 1525-3171 ; 0032-5791
    ISSN (online) 1525-3171
    ISSN 0032-5791
    DOI 10.1016/j.psj.2022.102048
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: High resolution parallel sequencing reveals multistrain Campylobacter in broiler chicken flocks testing ‘negative’ by conventional culture methods: implications for control of Campylobacter infection

    Colles, Frances M. / Karasova, Daniela / Crhanova, Magdalena / Preston, Stephen G. / Smith, Adrian L. / Dawkins, Marian S. / Rychlik, Ivan / Gebhardt-Henrich, Sabine G.

    Poultry science. 2022 June 29,

    2022  

    Abstract: Contaminated chicken meat is a major source of human Campylobacteriosis and rates of infection remain high, despite efforts to limit the colonisation of broiler (meat) chicken flocks on farms. Using conventional testing methods of culture or qPCR, ... ...

    Abstract Contaminated chicken meat is a major source of human Campylobacteriosis and rates of infection remain high, despite efforts to limit the colonisation of broiler (meat) chicken flocks on farms. Using conventional testing methods of culture or qPCR, Campylobacter is typically detected amongst broiler flocks from 3 wk of age, leading to the assumption that infection is introduced horizontally into chicken rearing houses at this time. In this study, we use parallel sequencing of a fragment of the Campylobacter outer membrane protein, encoded by the porA gene, to test for presence of Campylobacter DNA amongst fresh fecal samples collected from broiler flocks aged 23 to 28 d. Campylobacter DNA was detected in all of the 290 samples tested using the porA target, and in 48% of samples using 16S bacterial profiling, irrespective of whether or not Campylobacter could be detected using conventional qPCR thresholds. A single porAf2 variant was predominant among flocks that would be determined to be Campylobacter ‘positive’ by conventional means, but a diverse pattern was seen among flocks that were Campylobacter ‘negative’. The ability to routinely detect low levels of Campylobacter amongst broiler flocks at a much earlier age than would conventionally be identified requires a re-examination of how and when biosecurity measures are best applied for live birds. In addition, it may be useful to investigate why single Campylobacter variants proliferate in some broiler flocks and not others.
    Keywords Campylobacter ; biosecurity ; broiler chickens ; campylobacteriosis ; chicken meat ; genes ; humans ; outer membrane proteins
    Language English
    Dates of publication 2022-0629
    Publishing place Elsevier Inc.
    Document type Article
    Note Pre-press version
    ZDB-ID 242586-5
    ISSN 1525-3171 ; 0032-5791
    ISSN (online) 1525-3171
    ISSN 0032-5791
    DOI 10.1016/j.psj.2022.102048
    Database NAL-Catalogue (AGRICOLA)

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  4. Article ; Online: The influences of microbial colonisation and germ-free status on the chicken TCRβ repertoire.

    Dascalu, Stefan / Preston, Stephen G / Dixon, Robert J / Flammer, Patrik G / Fiddaman, Steven / Boyd, Amy / Sealy, Joshua E / Sadeyen, Jean-Remy / Kaspers, Bernd / Velge, Philippe / Iqbal, Munir / Bonsall, Michael B / Smith, Adrian L

    Frontiers in immunology

    2023  Volume 13, Page(s) 1052297

    Abstract: Microbial colonisation is paramount to the normal development of the immune system, particularly at mucosal sites. However, the relationships between the microbiome and the adaptive immune repertoire have mostly been explored in rodents and humans. Here, ...

    Abstract Microbial colonisation is paramount to the normal development of the immune system, particularly at mucosal sites. However, the relationships between the microbiome and the adaptive immune repertoire have mostly been explored in rodents and humans. Here, we report a high-throughput sequencing analysis of the chicken TCRβ repertoire and the influences of microbial colonisation on tissue-resident TCRβ+ cells. The results reveal that the microbiome is an important driver of TCRβ diversity in both intestinal tissues and the bursa of Fabricius, but not in the spleen. Of note, public TCRβ sequences (shared across individuals) make a substantial contribution to the repertoire. Additionally, different tissues exhibit biases in terms of their V family and J gene usage, and these effects were influenced by the gut-associated microbiome. TCRβ clonal expansions were identified in both colonised and germ-free birds, but differences between the groups were indicative of an influence of the microbiota. Together, these findings provide an insight into the avian adaptive immune system and the influence of the microbiota on the TCRβ repertoire.
    MeSH term(s) Humans ; Animals ; Chickens ; Immune System ; Intestines
    Language English
    Publishing date 2023-01-04
    Publishing country Switzerland
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2606827-8
    ISSN 1664-3224 ; 1664-3224
    ISSN (online) 1664-3224
    ISSN 1664-3224
    DOI 10.3389/fimmu.2022.1052297
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Standardized documentation and synoptic reporting of complex intestinal anatomy in enteric fistulation and intestinal failure.

    Williams, Katherine J / Donnelly, Suzanne / Gabe, Simon / Gupta, Arun / Holman, Richard / Preston, Stephen / Vaizey, Carolynne J / Corr, Alison / Mehta, Akash M

    Colorectal disease : the official journal of the Association of Coloproctology of Great Britain and Ireland

    2021  Volume 24, Issue 4, Page(s) 530–534

    Abstract: Aim: In intestinal failure, delineation of both structure and function are key to controlling symptoms and planning further intervention. We have developed a template for developing an 'anatomy at a glance' patient-specific map to aid decision making ... ...

    Abstract Aim: In intestinal failure, delineation of both structure and function are key to controlling symptoms and planning further intervention. We have developed a template for developing an 'anatomy at a glance' patient-specific map to aid decision making and counselling.
    Method: A core dataset was developed and used to create an editable template to demonstrate the gastrointestinal tract, its relationship to the genitourinary tract, and specific anterior abdominal wall features. This was then used to create an anatomical template, specific to each patient, and stored in the electronic patient record and imaging archive.
    Results: We have developed a technique for integration of multi-modal information into one diagram, easily referenced by the multidisciplinary team. Radiology, endoscopy and previous operation notes can be used to fill out a core dataset, which is then transposed into a standardized template. A worked example is shown.
    Conclusion: The mapping template has been successfully integrated into practice and aided decision making at all stages of the patient's therapeutic journey. It has been found helpful in planning routes of nutrition, preoperative optimization, surgical planning, interpreting postoperative imaging and managing patient expectations.
    MeSH term(s) Abdominal Wall/surgery ; Documentation ; Humans ; Intestinal Failure ; Intestine, Small ; Intestines
    Language English
    Publishing date 2021-12-13
    Publishing country England
    Document type Journal Article
    ZDB-ID 1440017-0
    ISSN 1463-1318 ; 1462-8910
    ISSN (online) 1463-1318
    ISSN 1462-8910
    DOI 10.1111/codi.16007
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Are Nucleated Cell Counts Useful in the Diagnosis of Infection in Periprosthetic Fracture?

    Preston, Stephen / Somerville, Lyndsay / Lanting, Brent / Howard, James

    Clinical orthopaedics and related research

    2015  Volume 473, Issue 7, Page(s) 2238–2243

    Abstract: Background: Evaluating for the possibility of prosthetic joint infection in the setting of periprosthetic fracture is important because it determines the course of treatment. However, fracture-related inflammation can make investigations used in the ... ...

    Abstract Background: Evaluating for the possibility of prosthetic joint infection in the setting of periprosthetic fracture is important because it determines the course of treatment. However, fracture-related inflammation can make investigations used in the diagnosis of infection less reliable.
    Questions/purposes: The purpose of our study was to evaluate synovial fluid nucleated cell counts as a diagnostic test for deep prosthetic infection in patients with periprosthetic fractures around hip and knee arthroplasties. Specifically, we wished to determine the test's properties (sensitivity, specificity, positive predictive value [PPV], and negative predictive value [NPV]) using threshold levels of nucleated cell counts as they are otherwise used in the diagnosis of periprosthetic infection.
    Methods: Billing codes were used to identify all cases of revision total hip arthroplasty (THA), revision total knee arthroplasty (TKA), open reduction and internal fixation (ORIF) of the femur, and ORIF of the tibia at our institution between 2005 and 2013. A total of 2537 charts were identified and reviewed to reveal 269 patients with 269 periprosthetic fractures about a THA or TKA (10.6% of charts reviewed). Of these, 27 fractures in 27 patients (10% of the periprosthetic fractures identified) underwent aspiration of their total joint arthroplasty to rule out infection before surgical intervention. The decision to aspirate was made by the treating surgeon based on clinical suspicion of infection from the patient history, physical examination, and radiographic findings. Nucleated cell counts from joint aspirates were recorded for all 27 patients. Synovial fluid culture results were then used to calculate the sensitivity, specificity, PPV, and NPV of an elevated nucleated cell count in the diagnosis of infection.
    Results: The specificity, sensitivity, PPV, and NPV of an elevated nucleated cell count in the diagnosis of infection were 64% (95% confidence interval [CI, 34.94-75.57]), 100% (95% CI, 19.29-100), 18% (95% CI, 2.37-45.46), and 100% (95% CI, 76.66-100), respectively. Eleven of 27 patients (41%) with joint aspirates had elevated nucleated cell counts. Only two of the 11 patients (18%) with elevated nucleated cell counts had positive synovial fluid cultures. None of the patients with normal nucleated cell counts had positive synovial fluid cultures.
    Conclusions: Although quite common, an elevated nucleated cell count has moderate specificity and poor PPV in the diagnosis of infection in the setting of periprosthetic fracture.
    Level of evidence: Level IV, therapeutic study.
    MeSH term(s) Aged ; Cell Count ; Female ; Humans ; Male ; Periprosthetic Fractures/complications ; Prosthesis-Related Infections/diagnosis ; Prosthesis-Related Infections/etiology ; Retrospective Studies ; Synovial Fluid/cytology
    Language English
    Publishing date 2015-07
    Publishing country United States
    Document type Evaluation Studies ; Journal Article
    ZDB-ID 80301-7
    ISSN 1528-1132 ; 0009-921X
    ISSN (online) 1528-1132
    ISSN 0009-921X
    DOI 10.1007/s11999-015-4162-8
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: A Case of Thrombotic Microangiopathy and Acute Sarcoidosis.

    Martinelli, Anthony W / Dunn, William / McClure, Mark E / Walker, Ieuan / Stewart, Andrew / Karia, Sumit / Preston, Stephen D / Thiru, Sathia / Torpey, Nicholas / Ojha, Sanjay / Symington, Emily / Nathan, James A

    Chest

    2022  Volume 162, Issue 5, Page(s) e245–e248

    Abstract: Although sarcoidosis is an established cause of multiorgan dysfunction, acute presentation with thrombotic microangiopathy resulting in severe renal and hematological sequelae has not been reported. We describe the case of a patient presenting with ... ...

    Abstract Although sarcoidosis is an established cause of multiorgan dysfunction, acute presentation with thrombotic microangiopathy resulting in severe renal and hematological sequelae has not been reported. We describe the case of a patient presenting with hypercalcemia, pancreatitis, and acute renal failure, followed by microangiopathic hemolytic anemia. Although there were no significant respiratory symptoms, thoracic radiology and mediastinal lymph node biopsy results were in keeping with sarcoidosis as the underlying cause of this multisystem presentation. Corticosteroids were commenced with clinical and biochemical improvement. This novel case highlights the need to consider sarcoidosis as part of the differential diagnosis for unusual multiorgan presentations and for early multidisciplinary involvement in such cases to permit optimal treatment.
    MeSH term(s) Humans ; Thrombotic Microangiopathies/diagnosis ; Thrombotic Microangiopathies/etiology ; Kidney ; Acute Kidney Injury/therapy ; Biopsy/adverse effects ; Sarcoidosis/complications ; Sarcoidosis/diagnosis ; Sarcoidosis/pathology
    Language English
    Publishing date 2022-11-07
    Publishing country United States
    Document type Case Reports
    ZDB-ID 1032552-9
    ISSN 1931-3543 ; 0012-3692
    ISSN (online) 1931-3543
    ISSN 0012-3692
    DOI 10.1016/j.chest.2022.06.023
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Particulate inorganic adjuvants: recent developments and future outlook.

    Maughan, Charlotte N / Preston, Stephen G / Williams, Gareth R

    The Journal of pharmacy and pharmacology

    2015  Volume 67, Issue 3, Page(s) 426–449

    Abstract: Objectives: To review the state of the art and assess future potential in the use of inorganic particulates as vaccine adjuvants.: Key findings: An adjuvant is an entity added to a vaccine formulation to ensure that robust immunity to the antigen is ... ...

    Abstract Objectives: To review the state of the art and assess future potential in the use of inorganic particulates as vaccine adjuvants.
    Key findings: An adjuvant is an entity added to a vaccine formulation to ensure that robust immunity to the antigen is inculcated. The inclusion of an adjuvant is typically vital for the efficacy of vaccines using inactivated organisms, subunit and DNA antigens. With increasing research efforts being focused on subunit and DNA antigens because of their improved safety profiles, the development of appropriate adjuvants is becoming ever more crucial. Despite this, very few adjuvants are licensed for use in humans (four by the FDA, five by the European Medicines Agency). The most widely used adjuvant, alum, has been used for nearly 90 years, yet its mechanism of action remains poorly understood. In addition, while alum produces a powerful antibody Th2 response, it does not provoke the cellular immune response required for the elimination of intracellular infections or cancers. New adjuvants are therefore needed, and inorganic systems have attracted much attention in this regard.
    Summary: In this review, the inorganic adjuvants currently in use are considered, and the efforts made to date to understand their mechanisms of action are summarised. We then move on to survey the literature on inorganic particulate adjuvants, focusing on the most interesting recent developments in this area and their future potential.
    MeSH term(s) Adjuvants, Immunologic/therapeutic use ; Alum Compounds/therapeutic use ; Humans ; Immunity, Cellular ; Metals/therapeutic use ; Neoplasms/prevention & control ; Vaccines
    Chemical Substances Adjuvants, Immunologic ; Alum Compounds ; Metals ; Vaccines ; aluminum sulfate (34S289N54E)
    Language English
    Publishing date 2015-03
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Review
    ZDB-ID 3107-0
    ISSN 2042-7158 ; 0022-3573 ; 0373-1022
    ISSN (online) 2042-7158
    ISSN 0022-3573 ; 0373-1022
    DOI 10.1111/jphp.12352
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Correction to: Repertoire analysis of γδ T cells in the chicken enables functional annotation of the genomic region revealing highly variable pan-tissue TCR gamma V gene usage as well as identifying public and private repertoires.

    Dixon, Robert / Preston, Stephen G / Dascalu, Stefan / Flammer, Patrik G / Fiddaman, Steven R / McLoughlin, Kirstie / Boyd, Amy / Volf, Jiri / Rychlik, Ivan / Bonsall, Michael B / Kaspers, Bernd / Smith, Adrian L

    BMC genomics

    2021  Volume 22, Issue 1, Page(s) 825

    Language English
    Publishing date 2021-11-16
    Publishing country England
    Document type Published Erratum
    ISSN 1471-2164
    ISSN (online) 1471-2164
    DOI 10.1186/s12864-021-08128-6
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Parallel sequencing of porA reveals a complex pattern of Campylobacter genotypes that differs between broiler and broiler breeder chickens.

    Colles, Frances M / Preston, Stephen G / Barfod, Kenneth Klingenberg / Flammer, Patrik G / Maiden, Martin C J / Smith, Adrian L

    Scientific reports

    2019  Volume 9, Issue 1, Page(s) 6204

    Abstract: Chicken meat represents an important source of Campylobacter infections of humans world-wide. A better understanding of Campylobacter epidemiology in commercial chicken flocks will facilitate the development of more effective intervention strategies. We ... ...

    Abstract Chicken meat represents an important source of Campylobacter infections of humans world-wide. A better understanding of Campylobacter epidemiology in commercial chicken flocks will facilitate the development of more effective intervention strategies. We developed a gene-specific parallel sequencing approach that efficiently indicated genetic diversity in farm-derived samples and revealed Campylobacter genotypes that would not be detected using microbiological culture. Parallel sequencing of the porA nucleotide fragment identified a different pattern of diversity in broiler flocks compared with broiler-breeder flocks at both individual bird and flock levels. Amongst the flocks tested, broiler flocks and individual birds were dominated by one or two porA fragment types whereas co-dominance with up to six porA fragment types was evident in breeder birds. A high proportion (83.6-93.3%) of porA variants were shared between broiler and breeder flocks. The porA-based diversity profiling could be a useful addition to the repertoire of tools employed to attribute potential sources of contamination for broiler flocks, including the environment, wild animals or other chickens. This approach can be extended to include other loci within Campylobacter and developed for molecular epidemiology studies of other bacterial species.
    MeSH term(s) Animal Husbandry ; Animals ; Bacterial Proteins/genetics ; Bacterial Typing Techniques ; Base Sequence ; Campylobacter/genetics ; Chickens/microbiology ; Genotype ; Molecular Epidemiology ; Porins/genetics ; Poultry Diseases/microbiology
    Chemical Substances Bacterial Proteins ; Porins
    Language English
    Publishing date 2019-04-17
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-019-42207-9
    Database MEDical Literature Analysis and Retrieval System OnLINE

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