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  1. Article ; Online: The impact of glycosylation on the structure, function, and interactions of CD14.

    Quintana, Jon Imanol / Delgado, Sandra / Rábano, Miriam / Azkargorta, Mikel / Florencio-Zabaleta, Mirane / Unione, Luca / Vivanco, Maria dM / Elortza, Félix / Jiménez-Barbero, Jesús / Ardá, Ana

    Glycobiology

    2024  Volume 34, Issue 3

    Abstract: CD14 is an innate immune receptor that senses pathogen-associated molecular patterns, such as lipopolysaccharide, to activate the innate immune response. Although CD14 is known to be glycosylated, detailed understanding about the structural and ... ...

    Abstract CD14 is an innate immune receptor that senses pathogen-associated molecular patterns, such as lipopolysaccharide, to activate the innate immune response. Although CD14 is known to be glycosylated, detailed understanding about the structural and functional significance of this modification is still missing. Herein, an NMR and MS-based study, assisted by MD simulations, has provided a 3D-structural model of glycosylated CD14. Our results reveal the existence of a key N-glycosylation site at Asn282 that exclusively contains unprocessed oligomannnose N-glycans that perfectly fit the concave cavity of the bent-solenoid shaped protein. This site is not accessible to glycosidases and is fundamental for protein folding and secretion. A second N-site at Asn151 displays mostly complex N-glycans, with the typical terminal epitopes of the host cell-line expression system (i.e. βGal, α2,3 and α2,6 sialylated βGal, here), but also particularities, such as the lack of core fucosylation. The glycan at this site points outside the protein surface, resulting in N-glycoforms fully exposed and available for interactions with lectins. In fact, NMR experiments show that galectin-4, proposed as a binder of CD14 on monocytes to induce their differentiation into macrophages-like cells, interacts in vitro with CD14 through the recognition of the terminal glycoepitopes on Asn151. This work provides key information about CD14 glycosylation, which helps to better understand its functional roles and significance. Although protein glycosylation is known to be dynamic and influenced by many factors, some of the features found herein (presence of unprocessed N-glycans and lack of core Fuc) are likely to be protein specific.
    MeSH term(s) Glycosylation ; Polysaccharides/chemistry ; Lectins/metabolism ; Cell Line ; Lipopolysaccharides/metabolism
    Chemical Substances Polysaccharides ; Lectins ; Lipopolysaccharides
    Language English
    Publishing date 2024-01-16
    Publishing country England
    Document type Journal Article
    ZDB-ID 1067689-2
    ISSN 1460-2423 ; 0959-6658
    ISSN (online) 1460-2423
    ISSN 0959-6658
    DOI 10.1093/glycob/cwae002
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Structures of the Inhibitory Receptor Siglec-8 in Complex with a High-Affinity Sialoside Analogue and a Therapeutic Antibody.

    Lenza, Maria Pia / Atxabal, Unai / Nycholat, Corwin / Oyenarte, Iker / Franconetti, Antonio / Quintana, Jon Imanol / Delgado, Sandra / Núñez-Franco, Reyes / Garnica Marroquín, Carmen Teresa / Coelho, Helena / Unione, Luca / Jiménez-Oses, Gonzalo / Marcelo, Filipa / Schubert, Mario / Paulson, James C / Jiménez-Barbero, Jesús / Ereño-Orbea, June

    JACS Au

    2022  Volume 3, Issue 1, Page(s) 204–215

    Abstract: Human sialic acid binding immunoglobulin-like lectin-8 (Siglec-8) is an inhibitory receptor that triggers eosinophil apoptosis and can inhibit mast cell degranulation when engaged by specific monoclonal antibodies (mAbs) or sialylated ligands. Thus, ... ...

    Abstract Human sialic acid binding immunoglobulin-like lectin-8 (Siglec-8) is an inhibitory receptor that triggers eosinophil apoptosis and can inhibit mast cell degranulation when engaged by specific monoclonal antibodies (mAbs) or sialylated ligands. Thus, Siglec-8 has emerged as a critical negative regulator of inflammatory responses in diverse diseases, such as allergic airway inflammation. Herein, we have deciphered the molecular recognition features of the interaction of Siglec-8 with the mAb lirentelimab (2C4, under clinical development) and with a sialoside mimetic with the potential to suppress mast cell degranulation. The three-dimensional structure of Siglec-8 and the fragment antigen binding (Fab) portion of the anti-Siglec-8 mAb 2C4, solved by X-ray crystallography, reveal that 2C4 binds close to the carbohydrate recognition domain (V-type Ig domain) on Siglec-8. We have also deduced the binding mode of a high-affinity analogue of its sialic acid ligand (9-
    Language English
    Publishing date 2022-12-23
    Publishing country United States
    Document type Journal Article
    ISSN 2691-3704
    ISSN (online) 2691-3704
    DOI 10.1021/jacsau.2c00592
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Structural insights into Siglec-15 reveal glycosylation dependency for its interaction with T cells through integrin CD11b.

    Lenza, Maria Pia / Egia-Mendikute, Leire / Antoñana-Vildosola, Asier / Soares, Cátia O / Coelho, Helena / Corzana, Francisco / Bosch, Alexandre / Manisha, Prodhi / Quintana, Jon Imanol / Oyenarte, Iker / Unione, Luca / Moure, María Jesús / Azkargorta, Mikel / Atxabal, Unai / Sobczak, Klaudia / Elortza, Felix / Sutherland, James D / Barrio, Rosa / Marcelo, Filipa /
    Jiménez-Barbero, Jesús / Palazon, Asis / Ereño-Orbea, June

    Nature communications

    2023  Volume 14, Issue 1, Page(s) 3496

    Abstract: Sialic acid-binding Ig-like lectin 15 (Siglec-15) is an immune modulator and emerging cancer immunotherapy target. However, limited understanding of its structure and mechanism of action restrains the development of drug candidates that unleash its full ... ...

    Abstract Sialic acid-binding Ig-like lectin 15 (Siglec-15) is an immune modulator and emerging cancer immunotherapy target. However, limited understanding of its structure and mechanism of action restrains the development of drug candidates that unleash its full therapeutic potential. In this study, we elucidate the crystal structure of Siglec-15 and its binding epitope via co-crystallization with an anti-Siglec-15 blocking antibody. Using saturation transfer-difference nuclear magnetic resonance (STD-NMR) spectroscopy and molecular dynamics simulations, we reveal Siglec-15 binding mode to α(2,3)- and α(2,6)-linked sialic acids and the cancer-associated sialyl-Tn (STn) glycoform. We demonstrate that binding of Siglec-15 to T cells, which lack STn expression, depends on the presence of α(2,3)- and α(2,6)-linked sialoglycans. Furthermore, we identify the leukocyte integrin CD11b as a Siglec-15 binding partner on human T cells. Collectively, our findings provide an integrated understanding of the structural features of Siglec-15 and emphasize glycosylation as a crucial factor in controlling T cell responses.
    MeSH term(s) Humans ; Crystallization ; Epitopes ; Glycosylation ; Integrins ; T-Lymphocytes
    Chemical Substances Epitopes ; Integrins ; ITGAM protein, human ; SIGLEC15 protein, human
    Language English
    Publishing date 2023-06-13
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2553671-0
    ISSN 2041-1723 ; 2041-1723
    ISSN (online) 2041-1723
    ISSN 2041-1723
    DOI 10.1038/s41467-023-39119-8
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Structural Characterization of N-Linked Glycans in the Receptor Binding Domain of the SARS-CoV-2 Spike Protein and their Interactions with Human Lectins.

    Lenza, Maria Pia / Oyenarte, Iker / Diercks, Tammo / Quintana, Jon Imanol / Gimeno, Ana / Coelho, Helena / Diniz, Ana / Peccati, Francesca / Delgado, Sandra / Bosch, Alexandre / Valle, Mikel / Millet, Oscar / Abrescia, Nicola G A / Palazón, Asís / Marcelo, Filipa / Jiménez-Osés, Gonzalo / Jiménez-Barbero, Jesús / Ardá, Ana / Ereño-Orbea, June

    Angewandte Chemie (International ed. in English)

    2020  Volume 59, Issue 52, Page(s) 23763–23771

    Abstract: The glycan structures of the receptor binding domain of the SARS-CoV2 spike glycoprotein expressed in human HEK293F cells have been studied by using NMR. The different possible interacting epitopes have been deeply analysed and characterized, providing ... ...

    Abstract The glycan structures of the receptor binding domain of the SARS-CoV2 spike glycoprotein expressed in human HEK293F cells have been studied by using NMR. The different possible interacting epitopes have been deeply analysed and characterized, providing evidence of the presence of glycan structures not found in previous MS-based analyses. The interaction of the RBD
    MeSH term(s) Angiotensin-Converting Enzyme 2/chemistry ; Angiotensin-Converting Enzyme 2/metabolism ; Glycosylation ; HEK293 Cells ; Humans ; Lectins, C-Type/chemistry ; Lectins, C-Type/metabolism ; Models, Molecular ; Nuclear Magnetic Resonance, Biomolecular ; Polysaccharides/chemistry ; Polysaccharides/metabolism ; Protein Binding ; Receptors, Coronavirus/chemistry ; Receptors, Coronavirus/metabolism ; SARS-CoV-2/metabolism ; Spike Glycoprotein, Coronavirus/chemistry ; Spike Glycoprotein, Coronavirus/genetics ; Spike Glycoprotein, Coronavirus/metabolism
    Chemical Substances Lectins, C-Type ; Polysaccharides ; Receptors, Coronavirus ; Spike Glycoprotein, Coronavirus ; spike protein, SARS-CoV-2 ; Angiotensin-Converting Enzyme 2 (EC 3.4.17.23)
    Keywords covid19
    Language English
    Publishing date 2020-10-22
    Publishing country Germany
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2011836-3
    ISSN 1521-3773 ; 1433-7851
    ISSN (online) 1521-3773
    ISSN 1433-7851
    DOI 10.1002/anie.202011015
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: Structural Characterization of N-Linked Glycans in the Receptor Binding Domain of the SARS-CoV-2 Spike Protein and their Interactions with Human Lectins

    Lenza, Maria Pia / Oyenarte, Iker / Diercks, Tammo / Quintana, Jon Imanol / Gimeno, Ana / Coelho, Helena / Diniz, Ana / Peccati, Francesca / Delgado, Sandra / Bosch, Alexandre / Valle, Mikel / Millet, Oscar / Abrescia, Nicola G A / Palazón, Asís / Marcelo, Filipa / Jiménez-Osés, Gonzalo / Jiménez-Barbero, Jesús / Ardá, Ana / Ereño-Orbea, June

    Angew. chem; int. ed. engl

    Abstract: The glycan structures of the receptor binding domain of the SARS-CoV2 spike glycoprotein expressed in human HEK293F cells have been studied by using NMR. The different possible interacting epitopes have been deeply analysed and characterized, providing ... ...

    Abstract The glycan structures of the receptor binding domain of the SARS-CoV2 spike glycoprotein expressed in human HEK293F cells have been studied by using NMR. The different possible interacting epitopes have been deeply analysed and characterized, providing evidence of the presence of glycan structures not found in previous MS-based analyses. The interaction of the RBD 13 C-labelled glycans with different human lectins, which are expressed in different organs and tissues that may be affected during the infection process, has also been evaluated by NMR. In particular, 15 N-labelled galectins (galectins-3, -7 and -8 N-terminal), Siglecs (Siglec-8, Siglec-10), and C-type lectins (DC-SIGN, MGL) have been employed. Complementary experiments from the glycoprotein perspective or from the lectin's point of view have permitted to disentangle the specific interacting epitopes in each case. Based on these findings, 3D models of the interacting complexes have been proposed.
    Keywords covid19
    Publisher WHO
    Document type Article
    Note WHO #Covidence: #757760
    Database COVID19

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  6. Article: Structural characterization of the N-linked glycans in the receptor binding domain of the SARS-CoV-2 spike protein and their interactions with human lectins using NMR spectroscopy

    Lenza, Maria Pia / Oyenarte, Iker / Diercks, Tammo / Quintana, Jon Imanol / Gimeno, Ana / Bosch, Alexandre / Coelho, Helena / Diniz, Ana / Peccati, Francesca / Delgado, Sandra / Valle, Mikel / Millet, Oscar / Abrescia, Nicola G A / Palazón, Asis / Marcelo, Filipa / Jimenez-Oses, Gonzalo / Jimenez-Barbero, Jesus / Arda, Ana / Ereño-Orbea, June

    Angew. chem; int. ed. engl

    Abstract: The glycan structures of the receptor binding domain of the SARS-CoV2 spike glycoprotein expressed in human HEK293F cells have been studied by using NMR. The different possible interacting epitopes have been deeply analysed and characterized, providing ... ...

    Abstract The glycan structures of the receptor binding domain of the SARS-CoV2 spike glycoprotein expressed in human HEK293F cells have been studied by using NMR. The different possible interacting epitopes have been deeply analysed and characterized, providing evidence of the presence of glycan structures not found in previous MS-based analyses. The interaction of the RBD 13C-labelled glycans with different human lectins, which are expressed in different organs and tissues that may be affected during the infection process, has also been evaluated by NMR. In particular, 15N-labelled galectins (galectins-3, -7 and -8 N-terminal), Siglecs (siglec-8, siglec-10), and C-type lectins (DC-SIGN, MGL) have been employed. Complementary experiments from the glycoprotein perspective or from the lectin's point of view have permitted to disentangle the specific interacting epitopes in each case. Based on these findings, 3D models of the interacting complexes have been proposed.
    Keywords covid19
    Publisher WHO
    Document type Article
    Note WHO #Covidence: #754910
    Database COVID19

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  7. Article ; Online: Structural Characterization of N‐Linked Glycans in the Receptor Binding Domain of the SARS‐CoV‐2 Spike Protein and their Interactions with Human Lectins

    Lenza, Maria Pia / Oyenarte, Iker / Diercks, Tammo / Quintana, Jon Imanol / Gimeno, Ana / Coelho, Helena / Diniz, Ana / Peccati, Francesca / Delgado, Sandra / Bosch, Alexandre / Valle, Mikel / Millet, Oscar / Abrescia, Nicola G. A. / Palazón, Asís / Marcelo, Filipa / Jiménez‐Osés, Gonzalo / Jiménez‐Barbero, Jesús / Ardá, Ana / Ereño‐Orbea, June

    Angewandte Chemie International Edition ; ISSN 1433-7851 1521-3773

    2020  

    Keywords General Chemistry ; Catalysis ; covid19
    Language English
    Publisher Wiley
    Publishing country us
    Document type Article ; Online
    DOI 10.1002/anie.202011015
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  8. Article ; Online: Structural Characterization of N‐Linked Glycans in the Receptor Binding Domain of the SARS‐CoV‐2 Spike Protein and their Interactions with Human Lectins

    Lenza, Maria Pia / Oyenarte, Iker / Diercks, Tammo / Quintana, Jon Imanol / Gimeno, Ana / Coelho, Helena / Diniz, Ana / Peccati, Francesca / Delgado, Sandra / Bosch, Alexandre / Valle, Mikel / Millet, Oscar / Abrescia, Nicola G. A. / Palazón, Asís / Marcelo, Filipa / Jiménez‐Osés, Gonzalo / Jiménez‐Barbero, Jesús / Ardá, Ana / Ereño‐Orbea, June

    Angewandte Chemie ; ISSN 0044-8249 1521-3757

    2020  

    Keywords General Medicine ; covid19
    Language English
    Publisher Wiley
    Publishing country us
    Document type Article ; Online
    DOI 10.1002/ange.202011015
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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