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  1. Article ; Online: Employing neural density functionals to generate potential energy surfaces.

    Jijila, B / Nirmala, V / Selvarengan, P / Kavitha, D / Arun Muthuraj, V / Rajagopal, A

    Journal of molecular modeling

    2024  Volume 30, Issue 3, Page(s) 65

    Abstract: Context: With the union of machine learning (ML) and quantum chemistry, amid the debate between machine-learned functionals and human-designed functionals in density functional theory (DFT), this paper aims to demonstrate the generation of potential ... ...

    Abstract Context: With the union of machine learning (ML) and quantum chemistry, amid the debate between machine-learned functionals and human-designed functionals in density functional theory (DFT), this paper aims to demonstrate the generation of potential energy surfaces using computations with machine-learned density functional approximation (ML-DFA). A recent research trend is the application of ML in quantum sciences in the design of density functionals such as DeepMind's Deep Learning model (DeepMind21, DM21). Though science reported the state-of-the-art performance of DM21, the opportunity to utilize DeepMind's pretrained DM21 neural networks in computations in quantum chemistry has not yet been tapped. So far in the literature, the Deep Learning density functionals (DM21) have not been applied to generate potential energy surfaces. While the superior accuracy of DM21 has been reported, there is still a scarcity of publications that apply DM21 in calculations in the field. In this context, for the first time in literature, neural density functionals inferring 2D potential energy surfaces (ML-DFA-PES) based on machine-learned DFA-based computational method is contributed in this paper. This paper reports the ML-DFA-generated PES for C
    Methods: In this method, 2D potential energy surfaces are obtained using a method that relies upon the neural network's ability to accurately learn the mapping between 3D electron density and exchange-correlation potential. By inserting Deep Learning inference in DFT with a pretrained neural network, self-consistent field (SCF) energy at different geometries along the coordinates of interest is computed, and then, potential energy surfaces are plotted. In this method, first, the electron density is computed mathematically, and this computed 3D electron density is used as a ML feature vector to predict the exchange correlation potential as a ML inference computed by a forward pass of pre-trained DM21 TensorFlow computational graph, followed by the computation of self-consistent field energy at multiple geometries, and then, SCF energies at different bond lengths/angles are plotted as 2D PES. We implement this in a python source code using frameworks such as PySCF and DM21. This paper contributes this implementation in open source. The source code and DM21-DFA-based PES are contributed at https://sites.google.com/view/MLfunctionals-DeepMind-PES .
    Language English
    Publishing date 2024-02-10
    Publishing country Germany
    Document type Journal Article
    ZDB-ID 1284729-X
    ISSN 0948-5023 ; 1610-2940
    ISSN (online) 0948-5023
    ISSN 1610-2940
    DOI 10.1007/s00894-024-05834-2
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Letter to the editor.

    Shukla, Sagrika / Rajagopal, Athreya

    Journal of oral biology and craniofacial research

    2022  Volume 13, Issue 1, Page(s) 56

    Language English
    Publishing date 2022-11-19
    Publishing country Netherlands
    Document type Journal Article
    ISSN 2212-4268
    ISSN 2212-4268
    DOI 10.1016/j.jobcr.2022.10.010
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Cassia auriculata Linn. extracts induce apoptosis and cell cycle arrest of A549 lung cancer cell lines: An in vitro approach

    Rajagopal, Anitha / Rajakannu, Subashini

    SAAB South African journal of botany. 2022 July, v. 147

    2022  

    Abstract: Cassia auriculata is an ethnobotanically important traditional medicinal plant of tropical Asia and recently, phytochemicals and their derivatives have gained scientific attention for their use as agents in cancer treatment and prevention. The aerial ... ...

    Abstract Cassia auriculata is an ethnobotanically important traditional medicinal plant of tropical Asia and recently, phytochemicals and their derivatives have gained scientific attention for their use as agents in cancer treatment and prevention. The aerial parts of Cassia auriculata plant were subjected to successive cold maceration to yield four fractions viz., n-hexane, dichloromethane, ethyl acetate, and ethanol extract. The extracts were fractionated by GC–MS (Gas Chromatography-Mass Spectrometry) and HPLC (High-Performance Liquid Chromatography) analysis for their phytochemical content. The chromatographic techniques revealed the presence of mainly the flavonoid compounds like flavone, chrysin, and quercetin. The anti-proliferative properties of ethanolic extract of C. auriculata on A549 human lung cancer cells have been reported. The cancer cell survival rate (MTT 3- [4, 5- dimethythiazol-2-yl] 2, 5-diphenyl tetrazolium bromide) was found to be reduced with lung cancer cells (IC₅₀ 26.24 μg/ml) when treated with C. auriculata ethanol extract (CAEE) when compared to the non-cancerous cells L132. The toxicity of the extract on L132 cells was low (IC₅₀ 55.78 μg/ml). The mode of cell death induced by CAEE on A549 cells was examined by various fluorescent staining techniques and characteristic nuclear and morphological changes for apoptosis were evaluated. The expression of caspase 9 activity was documented, which might have triggered cell death through apoptosis by the activation of caspase 9 in the ethanolic fraction treated A549 cells. Cell cycle analysis of treated A549 cells revealed a promising S phase cell cycle arrest. The flavonoid compounds identified in the present study might be responsible for the remarkable anticancer and other activities of the plant. From these findings, the plant C. auriculata can be further exploited to develop promising candidate molecules, particularly for lung cancer chemotherapy.
    Keywords Cassia ; apoptosis ; cancer therapy ; caspase-9 ; cell cycle checkpoints ; cell viability ; chrysin ; cold ; drug therapy ; ethanol ; ethyl acetate ; fluorescence ; gas chromatography-mass spectrometry ; hexane ; high performance liquid chromatography ; humans ; interphase ; lung neoplasms ; maceration ; medicinal plants ; methylene chloride ; neoplasm cells ; quercetin ; survival rate ; tetrazolium ; toxicity ; Asia
    Language English
    Dates of publication 2022-07
    Size p. 275-285.
    Publishing place Elsevier B.V.
    Document type Article
    ZDB-ID 2126918-X
    ISSN 0254-6299
    ISSN 0254-6299
    DOI 10.1016/j.sajb.2022.01.020
    Database NAL-Catalogue (AGRICOLA)

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  4. Article: Cassia auriculata and its role in infection / inflammation: A close look on future drug discovery

    Rajagopal, Anitha / Rajakannu, Subashini

    Chemosphere. 2022 Jan., v. 287

    2022  

    Abstract: The herbal plants contain various active compounds which have the ability to treat several human diseases without any side effects like cancer chemotherapeutic drugs used currently. It is reported that majority of the presently used drugs are derived ... ...

    Abstract The herbal plants contain various active compounds which have the ability to treat several human diseases without any side effects like cancer chemotherapeutic drugs used currently. It is reported that majority of the presently used drugs are derived from natural resources like plants or their products and hence, there is an urgent need to search for novel drugs from natural resources. Accordingly, the present study was designed to exploit an ethnomedicinally important plant Cassia auriculata Linn. for the identification of its phytoconstituents responsible for various properties such as antioxidant, anti-microbial and anti-diabetic activities. Different extracts of the plant were subjected to chromatographic techniques like high-performance liquid chromatography (HPLC), gas chromatography, and mass spectrometry (GC-MS) analysis to acquire the fingerprint of the phytoconstituents present in the plant. The extracts were analyzed by Ultra Violet-Visible (UV–Visible) and Fourier-Transform Infrared Spectroscopy (FT-IR). The efficacy of the extracts was examined through different in vitro assay methods. The GC-MS study exhibited the occurrence of 48 phytoconstituents in all the tested extracts and the HPLC study revealed the presence of quercetin. Different in vitro evaluations of the plant revealed that both ethyl acetate (DPPH-IC₅₀: 340.9 μg/ml) and ethanol fractions (DPPH-IC₅₀: 205.5 μg/ml) exhibited a potent activity. Hence, using the above study, novel potent antimicrobial and anti-diabetic principles from C. auriculata can be formulated in the future towards the clinical progress of therapeutic remedies against these ailments.
    Keywords Cassia ; Fourier transform infrared spectroscopy ; antioxidants ; chemical constituents of plants ; drug therapy ; drugs ; ethanol ; ethyl acetate ; high performance liquid chromatography ; humans ; inflammation ; quercetin
    Language English
    Dates of publication 2022-01
    Publishing place Elsevier Ltd
    Document type Article
    ZDB-ID 120089-6
    ISSN 1879-1298 ; 0045-6535 ; 0366-7111
    ISSN (online) 1879-1298
    ISSN 0045-6535 ; 0366-7111
    DOI 10.1016/j.chemosphere.2021.132345
    Database NAL-Catalogue (AGRICOLA)

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  5. Article: Perceptions of medical undergraduate students toward biomedical research - A sequential, explanatory, mixed-method study from Puducherry, South India.

    Narayan, Gaurang / Rajagopal, Anandaraj / Moharana, Lopamudra

    Journal of education and health promotion

    2023  Volume 12, Page(s) 33

    Abstract: Background: Biomedical research is not given adequate attention during undergraduation due to the failure of the medical curriculum to motivate the students to take up research, teach the research methodology, and emphasize the scope of research in the ... ...

    Abstract Background: Biomedical research is not given adequate attention during undergraduation due to the failure of the medical curriculum to motivate the students to take up research, teach the research methodology, and emphasize the scope of research in the future. Our objective was to study the perceptions of medical undergraduate students toward biomedical research and to explore the facilitators and barriers to biomedical research.
    Materials and methods: This was an explanatory, sequential, mixed-method study. Consenting medical undergraduate students, irrespective of their previous contribution to research, were interviewed by a pretested questionnaire concerning biomedical research, its barriers, and facilitators. For the qualitative component, two focused group discussions (FGDs) were conducted among students in the nonclinical and clinical phases. Data were analyzed and expressed as percentages. Thematic manual content analysis of the transcribed manuscripts was performed.
    Results: This study included 553 participants. Only 5.52% had previous experience undertaking research. Self-interest and acquiring deeper knowledge were identified as drivers. Lack of motivation, proper guidance, and training in research methodology was found to be the barrier among 90% of the subjects. The FGD reflected the perceptions of students and variations in their ideologies toward taking up research.
    Conclusion: It becomes important to analyze the factors that promote or avert a student from taking up research. A thorough investigation in this regard will be helpful for future cohorts of medical students and will impact their decisions on taking up research and in seeking a career in research-based fields.
    Language English
    Publishing date 2023-01-31
    Publishing country India
    Document type Journal Article
    ZDB-ID 2715449-X
    ISSN 2319-6440 ; 2277-9531
    ISSN (online) 2319-6440
    ISSN 2277-9531
    DOI 10.4103/jehp.jehp_829_22
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Cassia auriculata and its role in infection / inflammation: A close look on future drug discovery.

    Rajagopal, Anitha / Rajakannu, Subashini

    Chemosphere

    2021  Volume 287, Issue Pt 3, Page(s) 132345

    Abstract: The herbal plants contain various active compounds which have the ability to treat several human diseases without any side effects like cancer chemotherapeutic drugs used currently. It is reported that majority of the presently used drugs are derived ... ...

    Abstract The herbal plants contain various active compounds which have the ability to treat several human diseases without any side effects like cancer chemotherapeutic drugs used currently. It is reported that majority of the presently used drugs are derived from natural resources like plants or their products and hence, there is an urgent need to search for novel drugs from natural resources. Accordingly, the present study was designed to exploit an ethnomedicinally important plant Cassia auriculata Linn. for the identification of its phytoconstituents responsible for various properties such as antioxidant, anti-microbial and anti-diabetic activities. Different extracts of the plant were subjected to chromatographic techniques like high-performance liquid chromatography (HPLC), gas chromatography, and mass spectrometry (GC-MS) analysis to acquire the fingerprint of the phytoconstituents present in the plant. The extracts were analyzed by Ultra Violet-Visible (UV-Visible) and Fourier-Transform Infrared Spectroscopy (FT-IR). The efficacy of the extracts was examined through different in vitro assay methods. The GC-MS study exhibited the occurrence of 48 phytoconstituents in all the tested extracts and the HPLC study revealed the presence of quercetin. Different in vitro evaluations of the plant revealed that both ethyl acetate (DPPH-IC
    MeSH term(s) Antioxidants ; Cassia ; Drug Discovery ; Gas Chromatography-Mass Spectrometry ; Humans ; Inflammation ; Plant Extracts ; Spectroscopy, Fourier Transform Infrared
    Chemical Substances Antioxidants ; Plant Extracts
    Language English
    Publishing date 2021-09-24
    Publishing country England
    Document type Journal Article
    ZDB-ID 120089-6
    ISSN 1879-1298 ; 0045-6535 ; 0366-7111
    ISSN (online) 1879-1298
    ISSN 0045-6535 ; 0366-7111
    DOI 10.1016/j.chemosphere.2021.132345
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article: Offer attractiveness, decision conflict, and consumer response

    Rajagopal, Ananya

    Start-up enterprises and contemporary innovation strategies in the global marketplace , p. 245-250

    2018  , Page(s) 245–250

    Author's details Ananya Rajagopal (EGADE Business School, Tecnologico de Monterrey, Mexico)
    Keywords Sonderangebot ; Kaufentscheidung ; Kundenzufriedenheit ; Mexiko
    Language English
    Publisher Business Science Reference
    Publishing place Hershey, PA, USA
    Document type Article
    ISBN 978-1-5225-4831-7 ; 1-5225-4831-9
    Database ECONomics Information System

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  8. Book ; Online: Low-Cost On-device Partial Domain Adaptation (LoCO-PDA)

    Rajagopal, Aditya / Bouganis, Christos-Savvas

    Enabling efficient CNN retraining on edge devices

    2022  

    Abstract: With the increased deployment of Convolutional Neural Networks (CNNs) on edge devices, the uncertainty of the observed data distribution upon deployment has led researchers to to utilise large and extensive datasets such as ILSVRC'12 to train CNNs. ... ...

    Abstract With the increased deployment of Convolutional Neural Networks (CNNs) on edge devices, the uncertainty of the observed data distribution upon deployment has led researchers to to utilise large and extensive datasets such as ILSVRC'12 to train CNNs. Consequently, it is likely that the observed data distribution upon deployment is a subset of the training data distribution. In such cases, not adapting a network to the observed data distribution can cause performance degradation due to negative transfer and alleviating this is the focus of Partial Domain Adaptation (PDA). Current works targeting PDA do not focus on performing the domain adaptation on an edge device, adapting to a changing target distribution or reducing the cost of deploying the adapted network. This work proposes a novel PDA methodology that targets all of these directions and opens avenues for on-device PDA. LoCO-PDA adapts a deployed network to the observed data distribution by enabling it to be retrained on an edge device. Across subsets of the ILSVRC12 dataset, LoCO-PDA improves classification accuracy by 3.04pp on average while achieving up to 15.1x reduction in retraining memory consumption and 2.07x improvement in inference latency on the NVIDIA Jetson TX2. The work is open-sourced at \emph{link removed for anonymity}.
    Keywords Computer Science - Computer Vision and Pattern Recognition ; Computer Science - Artificial Intelligence
    Subject code 006
    Publishing date 2022-03-01
    Publishing country us
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  9. Article ; Online: Advanced enteropathy-associated T cell lymphoma (EATL) presenting with severe malabsorption and concomitantly diagnosed coeliac disease (CD).

    Rajagopal, Anjali / Thompson, Carrie A / Chorzempa, Allison K / Ryu, Alexander J

    BMJ case reports

    2023  Volume 16, Issue 12

    Abstract: Enteropathy-associated T cell lymphoma (EATL) is an aggressive subtype of non-Hodgkin's lymphoma often associated with coeliac disease (CD). We describe a previously healthy man in his 50 s who presented with a history of abdominal pain, failure to ... ...

    Abstract Enteropathy-associated T cell lymphoma (EATL) is an aggressive subtype of non-Hodgkin's lymphoma often associated with coeliac disease (CD). We describe a previously healthy man in his 50 s who presented with a history of abdominal pain, failure to thrive and significant weight loss over a 3-month period. Investigations revealed a positive coeliac serology, diffuse duodenal atrophy with multiple duodenal and jejunal ulcers on endoscopy and mesenteric lymphadenopathy on CT imaging. Duodenal tissue biopsy confirmed a diagnosis of EATL Stage IVB. Chemotherapy with cyclophosphamide, doxorubicin, vincristine and prednisone regimen was initiated. This case highlights the need for greater awareness and consideration of EATL in individuals with worsening malabsorption and abdominal pain, irrespective of coeliac history.
    MeSH term(s) Male ; Humans ; Celiac Disease/complications ; Celiac Disease/diagnosis ; Enteropathy-Associated T-Cell Lymphoma/diagnosis ; Enteropathy-Associated T-Cell Lymphoma/complications ; Intestinal Diseases/complications ; Lymphoma, Non-Hodgkin/complications ; Abdominal Pain/complications
    Language English
    Publishing date 2023-12-23
    Publishing country England
    Document type Case Reports ; Journal Article
    ISSN 1757-790X
    ISSN (online) 1757-790X
    DOI 10.1136/bcr-2023-258265
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article: Tinea with Irritant Contact Dermatitis-A Series of 15 Clinically Challenging Cases.

    Rajagopal, Abarna / Ashwini, Shankar Bharathi / Ranugha, P S Subramanian / Kanthraj, Garehatty R

    Indian dermatology online journal

    2023  Volume 14, Issue 6, Page(s) 906–907

    Language English
    Publishing date 2023-09-11
    Publishing country India
    Document type Journal Article
    ZDB-ID 2585814-2
    ISSN 2249-5673 ; 2229-5178
    ISSN (online) 2249-5673
    ISSN 2229-5178
    DOI 10.4103/idoj.idoj_635_22
    Database MEDical Literature Analysis and Retrieval System OnLINE

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