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  1. Article: Machine learning in postgenomic biology and personalized medicine.

    Ray, Animesh

    Wiley interdisciplinary reviews. Data mining and knowledge discovery

    2022  Volume 12, Issue 2

    Abstract: In recent years Artificial Intelligence in the form of machine learning has been revolutionizing biology, biomedical sciences, and gene-based agricultural technology capabilities. Massive data generated in biological sciences by rapid and deep gene ... ...

    Abstract In recent years Artificial Intelligence in the form of machine learning has been revolutionizing biology, biomedical sciences, and gene-based agricultural technology capabilities. Massive data generated in biological sciences by rapid and deep gene sequencing and protein or other molecular structure determination, on the one hand, requires data analysis capabilities using machine learning that are distinctly different from classical statistical methods; on the other, these large datasets are enabling the adoption of novel data-intensive machine learning algorithms for the solution of biological problems that until recently had relied on mechanistic model-based approaches that are computationally expensive. This review provides a bird's eye view of the applications of machine learning in post-genomic biology. Attempt is also made to indicate as far as possible the areas of research that are poised to make further impacts in these areas, including the importance of explainable artificial intelligence (XAI) in human health. Further contributions of machine learning are expected to transform medicine, public health, agricultural technology, as well as to provide invaluable gene-based guidance for the management of complex environments in this age of global warming.
    Language English
    Publishing date 2022-01-24
    Publishing country United States
    Document type Journal Article
    ISSN 1942-4787
    ISSN 1942-4787
    DOI 10.1002/widm.1451
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  2. Article ; Online: Untouched.

    Ray, Animesh

    The Lancet. Respiratory medicine

    2021  Volume 9, Issue 3, Page(s) 234–235

    MeSH term(s) Attitude to Health ; COVID-19/complications ; COVID-19/psychology ; Disease Progression ; Female ; Hepatitis, Autoimmune/complications ; Hepatitis, Autoimmune/psychology ; Humans ; Pandemics ; SARS-CoV-2
    Language English
    Publishing date 2021-01-22
    Publishing country England
    Document type Journal Article ; Personal Narrative
    ZDB-ID 2686754-0
    ISSN 2213-2619 ; 2213-2600
    ISSN (online) 2213-2619
    ISSN 2213-2600
    DOI 10.1016/S2213-2600(21)00029-1
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  3. Article ; Online: Re: 'Aspergillus-specific IgG antibodies for diagnosing chronic pulmonary aspergillosis compared to the reference standard' by Salzer et al.

    Maula, Md Tariq / Ray, Animesh

    Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases

    2024  Volume 30, Issue 5, Page(s) 694–695

    MeSH term(s) Humans ; Immunoglobulin G/blood ; Pulmonary Aspergillosis/diagnosis ; Pulmonary Aspergillosis/immunology ; Antibodies, Fungal/blood ; Aspergillus/immunology ; Chronic Disease ; Reference Standards ; Sensitivity and Specificity
    Chemical Substances Immunoglobulin G ; Antibodies, Fungal
    Language English
    Publishing date 2024-01-26
    Publishing country England
    Document type Letter ; Comment
    ZDB-ID 1328418-6
    ISSN 1469-0691 ; 1470-9465 ; 1198-743X
    ISSN (online) 1469-0691
    ISSN 1470-9465 ; 1198-743X
    DOI 10.1016/j.cmi.2024.01.007
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  4. Article ; Online: Fields, patterns and information: R.L. Brahmachary's contributions during the infancy of molecular embryology.

    Ray, Animesh

    The International journal of developmental biology

    2020  Volume 64, Issue 1-2-3, Page(s) 35–40

    Abstract: The contribution of Professor Ratan Lal Brahmachary's research during the early years of molecular embryology, its theoretical underpinnings, and its connection with those of other contemporary research efforts, are traced in this article as a part of ... ...

    Abstract The contribution of Professor Ratan Lal Brahmachary's research during the early years of molecular embryology, its theoretical underpinnings, and its connection with those of other contemporary research efforts, are traced in this article as a part of the history of developmental biology research in India.
    MeSH term(s) Developmental Biology/history ; Embryology/history ; History, 20th Century ; Humans ; Models, Theoretical
    Language English
    Publishing date 2020-07-06
    Publishing country Spain
    Document type Biography ; Historical Article ; Journal Article
    ZDB-ID 1036070-0
    ISSN 1696-3547 ; 0214-6282
    ISSN (online) 1696-3547
    ISSN 0214-6282
    DOI 10.1387/ijdb.190171ar
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  5. Article: Being Mindful of the Context.

    Ray, Animesh

    The Journal of emergency medicine

    2019  Volume 57, Issue 4, Page(s) 577

    MeSH term(s) Body Packing ; Mindfulness ; Radiography ; Radiology
    Language English
    Publishing date 2019-11-19
    Publishing country United States
    Document type Letter ; Comment
    ZDB-ID 605559-x
    ISSN 0736-4679
    ISSN 0736-4679
    DOI 10.1016/j.jemermed.2019.06.045
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  6. Article: Integrative Weaning Index: A Few Observations.

    Ray, Animesh

    Indian journal of critical care medicine : peer-reviewed, official publication of Indian Society of Critical Care Medicine

    2018  Volume 21, Issue 11, Page(s) 805–806

    Language English
    Publishing date 2018-01-30
    Publishing country India
    Document type Journal Article
    ZDB-ID 2121263-6
    ISSN 1998-359X ; 0972-5229
    ISSN (online) 1998-359X
    ISSN 0972-5229
    DOI 10.4103/0972-5229.218154
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  7. Article ; Online: Steroids in COVID-19: Tailor-made or "one size fits all"?

    Goel, Ayush / Ray, Animesh

    Advances in respiratory medicine

    2022  

    Abstract: Since the RECOVERY trial, steroids have endorsed by all guidelines for treating moderate-severe COVID-19. The prescribed dose is 6mg dexamethasone or its equivalents for 10 days. However, in clinical practice, there are numerous occasions where the role ... ...

    Abstract Since the RECOVERY trial, steroids have endorsed by all guidelines for treating moderate-severe COVID-19. The prescribed dose is 6mg dexamethasone or its equivalents for 10 days. However, in clinical practice, there are numerous occasions where the role of steroids cannot be extrapolated from current evidence: patients on immunosuppression, patients with persistent oxygen requirement after ten days of therapy, etc. We highlight the existing caveats and the need for further research and discussion.
    Language English
    Publishing date 2022-01-27
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2893877-X
    ISSN 2543-6031 ; 2451-4934
    ISSN (online) 2543-6031
    ISSN 2451-4934
    DOI 10.5603/ARM.a2022.0005
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  8. Article ; Online: Respiratory tract microbiome and pneumonia.

    Narendrakumar, Lekshmi / Ray, Animesh

    Progress in molecular biology and translational science

    2022  Volume 192, Issue 1, Page(s) 97–124

    Abstract: The respiratory system, like the gut, harbors a vast variety of microorganisms which include bacteria, viruses and fungi. The advent of next generation sequencing and multi-omic approaches has revealed the diversity and functional significances of ... ...

    Abstract The respiratory system, like the gut, harbors a vast variety of microorganisms which include bacteria, viruses and fungi. The advent of next generation sequencing and multi-omic approaches has revealed the diversity and functional significances of microorganisms in the respiratory health. It has been identified that there has been a co-evolution of indigenous respiratory microbiota and the human immune system. However, an immune response is usually generated when the homeostasis of the microbiota is disturbed. The respiratory microbiome has been identified to be important in shaping the respiratory immunity. Gut microbiota and oral microbiota are also known to be pivotal in shaping the immune system of the respiratory tract and influence its microbial dynamics. Proteobacteria, Firmicutes, and Bacteroidetes have been identified to be predominant in the respiratory system. While, Streptococcus, Prevotella, Fusobacteria, and Veillonella forms the major part, potential pathogens, such as Haemophilus and Neisseria, also form a small fraction of the healthy lung microbiome. Dysbiosis of respiratory microbiome can lead to increased colonization of opportunistic pathogens that can lead to respiratory infections such as pneumonia. This chapter describes the microbial diversity of respiratory system and the role of respiratory microbiome during respiratory infections like pneumonia. The chapter also discusses few strategies that have been proved effective in preventing pneumonia.
    MeSH term(s) Humans ; Microbiota ; Dysbiosis ; Pneumonia ; Respiratory Tract Infections/microbiology ; Lung
    Language English
    Publishing date 2022-09-11
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 2471995-X
    ISSN 1878-0814 ; 0079-6603 ; 1877-1173
    ISSN (online) 1878-0814
    ISSN 0079-6603 ; 1877-1173
    DOI 10.1016/bs.pmbts.2022.07.002
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  9. Article: An unusual cause of massive right leg swelling.

    Roy, Debarchan Barman / Ray, Animesh

    The Indian journal of medical research

    2022  Volume 152, Issue Suppl 1, Page(s) S76–S77

    MeSH term(s) Edema/diagnostic imaging ; Edema/etiology ; Humans ; Leg
    Language English
    Publishing date 2022-03-08
    Publishing country India
    Document type Journal Article
    ZDB-ID 390883-5
    ISSN 0971-5916 ; 0019-5340
    ISSN 0971-5916 ; 0019-5340
    DOI 10.4103/ijmr.IJMR_2100_19
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  10. Article: IgG4-related disease: A missed cause of hypereosinophilia.

    Shankar, Sujay Halkur / Ray, Animesh

    The Indian journal of medical research

    2022  Volume 152, Issue Suppl 1, Page(s) S4

    MeSH term(s) Diagnosis, Differential ; Humans ; Immunoglobulin G ; Immunoglobulin G4-Related Disease
    Chemical Substances Immunoglobulin G
    Language English
    Publishing date 2022-03-08
    Publishing country India
    Document type Journal Article
    ZDB-ID 390883-5
    ISSN 0971-5916 ; 0019-5340
    ISSN 0971-5916 ; 0019-5340
    DOI 10.4103/ijmr.IJMR_2160_19
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