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  1. AU="Raza, Syed Tasleem"
  2. AU="Humphreys, H"
  3. AU="Robert A Casero Jr"
  4. AU="Marinec, Paul S"
  5. AU="Rajebhosale, Prithviraj"

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  1. Article: Evaluation of the Association between Genetic Polymorphism of Interleukin-1 Beta (–511C/T and +3953C/T) and Cervical Cancer Susceptibility

    Pratap, Pushpendra D. / Raza, Syed Tasleem / Zaidi, Ghazala / Kunwar, Shipra / Eba, Ale / Rajput, Muneshwar

    South Asian Journal of Cancer

    2024  

    Abstract: Cervical cancer (CC) is the leading cause of cancer-related mortality among women, primarily caused by persistent human papillomavirus (HPV) infection, especially in developing countries. A proinflammatory cytokine, emerging as a major facilitator of ... ...

    Abstract Cervical cancer (CC) is the leading cause of cancer-related mortality among women, primarily caused by persistent human papillomavirus (HPV) infection, especially in developing countries. A proinflammatory cytokine, emerging as a major facilitator of carcinogenesis, is termed interleukin-1 beta (IL-1β), which characterizes host-environment interactions. Numerous epidemiological studies have revealed that IL-1β gene polymorphisms have been associated with numerous malignancies, but in the context of CC, results of these studies were inconclusive. Thus, our study aimed to explore the relationship between IL-1β polymorphisms (-511C/T and +3953C/T) and CC susceptibility. Genotyping was conducted on 192 CC patients and 200 healthy controls through polymerase chain reaction-restricted fragment length polymorphism. HPV analysis was done through real-time polymerase chain reaction, and the serum concentration of IL-1β was measured by enzyme-linked immunosorbent assay. Women with CT and TT genotypes of IL-1β -511C/T had a threefold increased risk of CC (odds ratio [OR], 3.60; 95% confidence interval [CI], 2.132-6.063; p  < 0.001 vs. OR, 3.34; 95% CI, 1.952-5.713; p  < 0.001) compared to controls. Women with the T allele of IL-1β -511C/T polymorphism were associated with increased CC susceptibility (OR, 2.00; 95% CI, 1.51-2.66; p  = 0.0001) compared to controls. No significant difference was found between patients and controls in the genotype or allele frequencies of IL-1β +3953C/T polymorphism (OR, 0.93; 95% CI, 0.56-1.55; p  = 0.86 vs. OR, 0.95; 95% CI, 0.72-1.26; p  = 0.74). There was no significant association found between IL-1β -511C/T promoter (OR, 2.41; 95% CI, 0.46-12.76; p  = 0.28 vs. OR, 1.64; 95% CI, 0.13-21.10; p = 0.7) and +3953C/T (OR, 3.76; 95% CI, 0.44-31.82; p  = 0.19 vs. OR, 0.21; 95% CI, 0.01-3.92; p  = 0.25) polymorphisms in tobacco chewers and smokers compared to controls. The level of serum concentration of IL-1β was significantly higher in cases compared to controls. Our results conclude that IL-1β -511C/T polymorphism is associated with CC susceptibility.
    Keywords ELISA ; gene polymorphism ; HPV ; PCR-RFLP ; RT-PCR
    Language English
    Publishing date 2024-02-12
    Publisher Thieme Medical and Scientific Publishers Pvt. Ltd.
    Publishing place Stuttgart ; New York
    Document type Article
    ZDB-ID 2719571-5
    ISSN 2278-4306 ; 2278-330X ; 2278-4306
    ISSN (online) 2278-4306
    ISSN 2278-330X ; 2278-4306
    DOI 10.1055/s-0043-1776788
    Database Thieme publisher's database

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  2. Article ; Online: Interactions between diabetic and hypertensive drugs: a pharmacogenetics approach.

    Ansari, Asma Imran / Rizvi, Aliya Abbas / Verma, Shrikant / Abbas, Mohammad / Siddiqi, Zeba / Mishra, Divakar / Verma, Sushma / Raza, Syed Tasleem / Mahdi, Farzana

    Molecular genetics and genomics : MGG

    2023  Volume 298, Issue 4, Page(s) 803–812

    Abstract: Diabetes is known to increase susceptibility to hypertension due to increase in inflammation, oxidative stress, and endothelial dysfunction, leading to vascular stiffness. The polytherapy might lead to several drug-drug interactions (DDIs), which cause ... ...

    Abstract Diabetes is known to increase susceptibility to hypertension due to increase in inflammation, oxidative stress, and endothelial dysfunction, leading to vascular stiffness. The polytherapy might lead to several drug-drug interactions (DDIs), which cause certain life-threatening complications such as diabetic nephropathy and hypoglycaemia. So, in this review we focused on drug-drug interactions and impact of genetic factors on drug responses for better disease management. Drug-drug interactions (DDIs) may act either synergistically or antagonistically. For instance, a combination of metformin with angiotensin II receptor antagonist or angiotensin-converting enzyme inhibitors (ACEIs) synergistically improves glucose absorption, whereas the same hypertensive drug combination with sulphonylurea might cause severe hypoglycaemia sometimes. Thiazolidinediones (TDZs) can cause fluid retention and heart failure when taken alone, but a combination of angiotensin II receptor antagonist with TZDs prevents these side effects. Interindividual genetic variation affects the DDI response. We found two prominent genes, GLUT4 and PPAR-γ, which are common targets for most of the drug. So, all of these findings established a connection between drug-drug interaction and genetics, which might be used for effective disease management.
    MeSH term(s) Humans ; Pharmacogenetics ; Diabetes Mellitus/drug therapy ; Diabetes Mellitus/genetics ; Hypertension/drug therapy ; Hypertension/genetics ; Angiotensin Receptor Antagonists/adverse effects ; Hypoglycemia
    Chemical Substances Angiotensin Receptor Antagonists
    Language English
    Publishing date 2023-05-07
    Publishing country Germany
    Document type Journal Article ; Review
    ZDB-ID 2044817-X
    ISSN 1617-4623 ; 1617-4615
    ISSN (online) 1617-4623
    ISSN 1617-4615
    DOI 10.1007/s00438-023-02011-7
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Impact of I/D polymorphism of angiotensin-converting enzyme 1 (ACE1) gene on the severity of COVID-19 patients

    Verma, Sushma / Abbas, Mohammad / Verma, Shrikant / Khan, Faizan Haider / Raza, Syed Tasleem / Siddiqi, Zeba / Ahmad, Israr / Mahdi, Farzana

    Infection, genetics, and evolution. 2021 July, v. 91

    2021  

    Abstract: Severe acute respiratory syndrome corona virus-2 (SARS-CoV-2) has first emerged from China in December 2019 and causes coronavirus induced disease 19 (COVID-19). Since then researchers worldwide have been struggling to detect the possible pathogenesis of ...

    Abstract Severe acute respiratory syndrome corona virus-2 (SARS-CoV-2) has first emerged from China in December 2019 and causes coronavirus induced disease 19 (COVID-19). Since then researchers worldwide have been struggling to detect the possible pathogenesis of this disease. COVID-19 showed a wide range of clinical behavior from asymptomatic to severe acute respiratory disease syndrome. However, the etiology of susceptibility to severe lung injury is not yet fully understood. Angiotensin-converting enzyme1 (ACE1) convert angiotensin I into Angiotensin II that was further metabolized by ACE 2 (ACE2). The binding ACE2 receptor to SARS-CoV-2 facilitate its enter into the host cell. The interaction and imbalance between ACE1 and ACE2 play a crucial role in the pathogenesis of lung injury. Thus, the aim of this study was to investigate the association of ACE1 I/D polymorphism with severity of Covid-19.The study included RT-PCR confirmed 269 cases of Covid-19. All cases were genotyped for ACE1 I/D polymorphism using polymerase chain reaction and followed by statistical analysis (SPSS, version 15.0).We found that ACE1 DD genotype, frequency of D allele, older age (≥46 years), unmarried status, and presence of diabetes and hypertension were significantly higher in severe COVID-19 patient. ACE1 ID genotype was significantly independently associated with high socio-economic COVID-19 patients (OR: 2.48, 95% CI: 1.331–4.609).These data suggest that the ACE1 genotype may impact the incidence and clinical outcome of COVID-19 and serve as a predictive marker for COVID-19 risk and severity.
    Keywords COVID-19 infection ; Severe acute respiratory syndrome coronavirus 2 ; alleles ; diabetes ; etiology ; evolution ; genotype ; genotyping ; hypertension ; infection ; lungs ; pathogenesis ; patients ; peptidyl-dipeptidase A ; respiratory tract diseases ; risk ; socioeconomics ; statistical analysis ; China
    Language English
    Dates of publication 2021-07
    Publishing place Elsevier B.V.
    Document type Article
    ZDB-ID 2037068-4
    ISSN 1567-1348
    ISSN 1567-1348
    DOI 10.1016/j.meegid.2021.104801
    Database NAL-Catalogue (AGRICOLA)

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  4. Article ; Online: Genetic Variants in Interleukin-10 Gene Association with Susceptibility and Cervical Cancer Development: A Case Control Study.

    Pratap, Pushpendra D / Raza, Syed Tasleem / Zaidi, Ghazala / Kunwar, Shipra / Ahmad, Sharique / Charles, Mark Rector / Eba, Ale / Rajput, Muneshwar

    Global medical genetics

    2022  Volume 9, Issue 2, Page(s) 129–140

    Abstract: ... ...

    Abstract Objectives
    Language English
    Publishing date 2022-02-25
    Publishing country Germany
    Document type Journal Article
    ZDB-ID 3009997-3
    ISSN 2699-9404 ; 2699-9404
    ISSN (online) 2699-9404
    ISSN 2699-9404
    DOI 10.1055/s-0042-1743262
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Genetic Variants and Drug Efficacy in Tuberculosis: A Step toward Personalized Therapy.

    Khan, Almas / Abbas, Mohammad / Verma, Sushma / Verma, Shrikant / Rizvi, Aliya Abbas / Haider, Fareya / Raza, Syed Tasleem / Mahdi, Farzana

    Global medical genetics

    2022  Volume 9, Issue 2, Page(s) 90–96

    Abstract: Tuberculosis (TB) continues to be a major infectious disease affecting individuals worldwide. Current TB treatment strategy recommends the standard short-course chemotherapy regimen containing first-line drug, i.e., isoniazid, rifampicin, pyrazinamide, ... ...

    Abstract Tuberculosis (TB) continues to be a major infectious disease affecting individuals worldwide. Current TB treatment strategy recommends the standard short-course chemotherapy regimen containing first-line drug, i.e., isoniazid, rifampicin, pyrazinamide, and ethambutol to treat patients suffering from drug-susceptible TB. Although
    Language English
    Publishing date 2022-02-25
    Publishing country Germany
    Document type Journal Article ; Review
    ZDB-ID 3009997-3
    ISSN 2699-9404 ; 2699-9404
    ISSN (online) 2699-9404
    ISSN 2699-9404
    DOI 10.1055/s-0042-1743567
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Luteolin Causes 5'CpG Demethylation of the Promoters of TSGs and Modulates the Aberrant Histone Modifications, Restoring the Expression of TSGs in Human Cancer Cells.

    Pramodh, Sreepoorna / Raina, Ritu / Hussain, Arif / Bagabir, Sali Abubaker / Haque, Shafiul / Raza, Syed Tasleem / Ajmal, Mohammad Rehan / Behl, Shalini / Bhagavatula, Deepika

    International journal of molecular sciences

    2022  Volume 23, Issue 7

    Abstract: Cancer progression is linked to abnormal epigenetic alterations such as DNA methylation and histone modifications. Since epigenetic alterations, unlike genetic changes, are heritable and reversible, they have been considered as interesting targets for ... ...

    Abstract Cancer progression is linked to abnormal epigenetic alterations such as DNA methylation and histone modifications. Since epigenetic alterations, unlike genetic changes, are heritable and reversible, they have been considered as interesting targets for cancer prevention and therapy by dietary compounds such as luteolin. In this study, epigenetic modulatory behaviour of luteolin was analysed on HeLa cells. Various assays including colony forming and migration assays, followed by biochemical assays of epigenetic enzymes including DNA methyltransferase, histone methyl transferase, histone acetyl transferase, and histone deacetylases assays were performed. Furthermore, global DNA methylation and methylation-specific PCR for examining the methylation status of CpG promoters of various tumour suppressor genes (TSGs) and the expression of these TSGs at transcript and protein level were performed. It was observed that luteolin inhibited migration and colony formation in HeLa cells. It also modulated DNA methylation at promoters of TSGs and the enzymatic activity of DNMT, HDAC, HMT, and HAT and reduced the global DNA methylation. Decrease in methylation resulted in the reactivation of silenced tumour suppressor genes including
    MeSH term(s) DNA Methylation ; DNA Modification Methylases/genetics ; Demethylation ; Epigenesis, Genetic ; Gene Expression Regulation, Neoplastic ; HeLa Cells ; Histone Code ; Histone Deacetylases/metabolism ; Humans ; Luteolin/pharmacology ; Neoplasms/drug therapy ; Neoplasms/genetics
    Chemical Substances DNA Modification Methylases (EC 2.1.1.-) ; Histone Deacetylases (EC 3.5.1.98) ; Luteolin (KUX1ZNC9J2)
    Language English
    Publishing date 2022-04-06
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2019364-6
    ISSN 1422-0067 ; 1422-0067 ; 1661-6596
    ISSN (online) 1422-0067
    ISSN 1422-0067 ; 1661-6596
    DOI 10.3390/ijms23074067
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Association of eNOS (G894T, rs1799983) and KCNJ11 (E23K, rs5219) gene polymorphism with coronary artery disease in North Indian population.

    Raza, Syed Tasleem / Singh, Sachendra P / Rizvi, Saliha / Zaidi, Alina / Srivastava, Sanchita / Hussain, Arif / Mahdi, Farzana

    African health sciences

    2022  Volume 21, Issue 3, Page(s) 1163–1171

    Abstract: Background: Endothelial nitric oxide synthase (eNOS) and potassium voltage-gated channel subfamily J member 11 (KCNJ11) could be the candidate genes for coronary artery disease (CAD). This study investigated the relationship of the eNOS (rs1799983) and ... ...

    Abstract Background: Endothelial nitric oxide synthase (eNOS) and potassium voltage-gated channel subfamily J member 11 (KCNJ11) could be the candidate genes for coronary artery disease (CAD). This study investigated the relationship of the eNOS (rs1799983) and KCNJ11 (rs5219) polymorphisms with the presence and severity of CAD in the North Indian population.
    Methods: This study included 300 subjects, 150 CAD cases and 150 healthy controls. Single nucleotide polymorphism was evaluated by Polymerase chain reaction and Restriction fragment length polymorphism (PCR-RFLP). Analysis was performed by SPSS (version 21.0).
    Results: We observed that KK genotype of KCNJ11E23K (rs5219) polymorphism (P=0.0001) genotypes and K allele (P=0.0001) was found to be a positive risk factor and strongly associated with CAD. In the case of eNOSG894T (rs1799983) there was no association found with CAD.
    Conclusion: These results illustrate the probability of associations between SNPs and CAD although specific genetic polymorphisms affecting ion channel function and expression have still to be clarified by further investigations involving larger cohorts.
    MeSH term(s) Asians ; Case-Control Studies ; Coronary Artery Disease/epidemiology ; Coronary Artery Disease/genetics ; Genetic Predisposition to Disease ; Genotype ; Humans ; Nitric Oxide Synthase Type III/genetics ; Nitric Oxide Synthase Type III/metabolism ; Polymorphism, Restriction Fragment Length ; Polymorphism, Single Nucleotide ; Risk Factors
    Chemical Substances NOS3 protein, human (EC 1.14.13.39) ; Nitric Oxide Synthase Type III (EC 1.14.13.39)
    Language English
    Publishing date 2022-02-10
    Publishing country Uganda
    Document type Journal Article
    ZDB-ID 2240308-5
    ISSN 1729-0503 ; 1680-6905
    ISSN (online) 1729-0503
    ISSN 1680-6905
    DOI 10.4314/ahs.v21i3.25
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Implication of single nucleotide polymorphisms in

    Rizvi, Saliha / Rizvi, S Mohd Shiraz / Raza, Syed Tasleem / Abbas, Mohd / Fatima, Kaynat / Zaidi, Zeashan H / Mahdi, Farzana

    The Egyptian journal of medical human genetics

    2022  Volume 23, Issue 1, Page(s) 145

    Abstract: Background: Coronavirus disease 2019 (COVID-19) is an ongoing pandemic which has emerged as a new challenge for the medical sciences. Severity of COVID-19 is mostly determined with overexpressed proinflammatory cytokines eventually leading to ... ...

    Abstract Background: Coronavirus disease 2019 (COVID-19) is an ongoing pandemic which has emerged as a new challenge for the medical sciences. Severity of COVID-19 is mostly determined with overexpressed proinflammatory cytokines eventually leading to endothelial dysfunction causing vital organ injury, especially in the lungs. It has been postulated that various genetic mutations might be associated with an increased risk of disease severity in COVID-19. This study was thus carried out to determine the association of
    Methods: The study included 160 RT-PCR confirmed COVID-19 patients with mild (
    Results: This study found a significant gender and age-based discrepancy in COVID-19 severity with 1.85-and 3.81-fold increased risk of COVID-19 in males of mild and severe groups as compared to females (
    Conclusion: In this regard, the present study provided an evidence that
    Language English
    Publishing date 2022-10-01
    Publishing country Egypt
    Document type Journal Article
    ZDB-ID 2515357-2
    ISSN 2090-2441 ; 2090-2441
    ISSN (online) 2090-2441
    ISSN 2090-2441
    DOI 10.1186/s43042-022-00344-3
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Genetic polymorphisms of IL6 gene -174G > C and -597G > A are associated with the risk of COVID-19 severity.

    Verma, Shrikant / Verma, Sushma / Khan, Faizan Haider / Siddiqi, Zeba / Raza, Syed Tasleem / Abbas, Mohammad / Mahdi, Farzana

    International journal of immunogenetics

    2022  Volume 50, Issue 1, Page(s) 5–11

    Abstract: Coronavirus disease-2019 (COVID-19) is pro-inflammatory disorder characterized by acute respiratory distress syndrome. Interleukin-6, a cytokine secreted by macrophages, which mediates an inflammatory response, is frequently increased and associated with ...

    Abstract Coronavirus disease-2019 (COVID-19) is pro-inflammatory disorder characterized by acute respiratory distress syndrome. Interleukin-6, a cytokine secreted by macrophages, which mediates an inflammatory response, is frequently increased and associated with the severity in COVID-19 patients. The differential expression of IL6 cytokine in COVID-19 patients may be associated with the presence of single nucleotide polymorphisms (SNPs) in regulatory region of cytokine genes. The aim of this study is to investigate the role of two promoter polymorphisms of the IL6 gene (-597G > A and -174G > C) with the severity of COVID-19. The study included 242 patients, out of which 97 patients with severe symptoms and 145 patients with mild symptoms of COVID-19. Genotyping of two selected SNPs, rs1800795 (-174G > C) and rs1800797 (-597G > A) of promoter region of IL6 gene, was performed by polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP). In our study, individuals with GC genotypes of IL6 (-174G > C) polymorphism showed significantly higher risk of severity [adjusted odds (OR) 3.86, p <.001] but we did not observe any association of COVID-19 severity with rs1800797 (-597G > A) polymorphism. The COVID-19 severity was significantly higher in individuals having 'C' allele of IL6 (-174G > C) polymorphism (p = .014). Linkage disequilibrium between rs1800795 (-174G > C) and rs1800797 (-597G > A) showed that individuals having AC* haplotype significantly association with COVID-19 severity (p = .034). Our results suggest that 'C' allele of rs1800795 (-174G > C) polymorphism of IL6 may be the risk allele for severity of COVID-19 in North Indian population.
    MeSH term(s) Humans ; Interleukin-6/genetics ; Genetic Predisposition to Disease ; COVID-19/genetics ; Genotype ; Polymorphism, Single Nucleotide ; Gene Frequency
    Chemical Substances Interleukin-6
    Language English
    Publishing date 2022-11-02
    Publishing country England
    Document type Journal Article
    ZDB-ID 2177883-8
    ISSN 1744-313X ; 1744-3121
    ISSN (online) 1744-313X
    ISSN 1744-3121
    DOI 10.1111/iji.12605
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Association of DNA Repair Genes XRCC1 and APE-1 with the Risk of Cervical Cancer in North Indian population.

    Charles, Mark Rector / Raza, Syed Tasleem / Sharma, Rolee / Pratap, Pushpendra / Eba, Ale / Singh, Manvendra

    Asian Pacific journal of cancer prevention : APJCP

    2020  Volume 21, Issue 7, Page(s) 2061–2065

    Abstract: Backgrounds: Cervical cancer (CC) is one of the leading cause of death in women worldwide, HPV infection is the major risk factor in the disease development, 0and however other risk factor such as chemical carcinogens, genetic susceptibility and altered ...

    Abstract Backgrounds: Cervical cancer (CC) is one of the leading cause of death in women worldwide, HPV infection is the major risk factor in the disease development, 0and however other risk factor such as chemical carcinogens, genetic susceptibility and altered immune system are also a cause of the disease progression. In the light of the above statement we studied the base excision repair pathway (BER).
    Methods: We identified and studied the association of Single Nucleotide polymorphisms in the DNA repair genes of XRCC1 (Arg194Trp, Arg399G,) and APE-1Asp/148Glu to the susceptibility of cervical cancer (CC) in North Indian population. In our study of cases (n=102). Controls (n=109) were recruited from among women without cervical abnormalities. Genotypes were determined by PCR-CTPP method, Taking DNA from peripheral blood in a case control study.
    Results: A positive association was observed between the polymorphisms of XRCC1 genes, that is, in codons 194 (P=0.03, odds ratio (OR) =2.39, 95% confidence interval (CI)=5.2-1.1), 280 (P=0.01, OR=4.1, 95% CI=11.5-1.3) and 399 (P=0.01, OR=3.4, 95% CI=8.6-1.3) while APE-1 genotype GG (p=0.03,odds ratio(OR)=0.2,95% confidence interval (CI)=0.97-0.004) we observed a statistically significant protective role in developing cervical cancer.
    Conclusion: Our results suggested that, XRCC1 gene is an important candidate gene for susceptibility to cervical cancer. Although the sample size was small, the present study indicate a statistical association between cervical cancer and XRCC1 SNPs. Future studies are needed that may provide a better understanding of the association between gene polymorphism and cervical carcinoma risk.
    .
    MeSH term(s) Adenocarcinoma/epidemiology ; Adenocarcinoma/genetics ; Adenocarcinoma/pathology ; Biomarkers, Tumor/genetics ; Carcinoma, Squamous Cell/epidemiology ; Carcinoma, Squamous Cell/genetics ; Carcinoma, Squamous Cell/pathology ; Case-Control Studies ; DNA Repair ; DNA-(Apurinic or Apyrimidinic Site) Lyase/genetics ; Female ; Follow-Up Studies ; Genetic Predisposition to Disease ; Humans ; Male ; Middle Aged ; Polymorphism, Single Nucleotide ; Prognosis ; Uterine Cervical Neoplasms/epidemiology ; Uterine Cervical Neoplasms/genetics ; Uterine Cervical Neoplasms/pathology ; X-ray Repair Cross Complementing Protein 1/genetics
    Chemical Substances Biomarkers, Tumor ; X-ray Repair Cross Complementing Protein 1 ; XRCC1 protein, human ; APEX1 protein, human (EC 4.2.99.18) ; DNA-(Apurinic or Apyrimidinic Site) Lyase (EC 4.2.99.18)
    Language English
    Publishing date 2020-07-01
    Publishing country Thailand
    Document type Journal Article
    ZDB-ID 2218955-5
    ISSN 2476-762X ; 1513-7368
    ISSN (online) 2476-762X
    ISSN 1513-7368
    DOI 10.31557/APJCP.2020.21.7.2061
    Database MEDical Literature Analysis and Retrieval System OnLINE

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