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  1. Article ; Online: Transcription Factor E2F1 Enhances Hepatocellular Carcinoma Cell Proliferation and Stemness by Activating GINS1.

    Ren, Xuefeng / Shen, Lianqiang / Gao, Shan

    Journal of environmental pathology, toxicology and oncology : official organ of the International Society for Environmental Toxicology and Cancer

    2023  Volume 43, Issue 1, Page(s) 79–90

    Abstract: Present studies report that high expression of GINS complex subunit 1 (GINS1) is notably pertinent to poor survival for hepatocellular carcinoma (HCC), but it remains unclear how GINS1 affects the progression of HCC. This study aims at investigating the ... ...

    Abstract Present studies report that high expression of GINS complex subunit 1 (GINS1) is notably pertinent to poor survival for hepatocellular carcinoma (HCC), but it remains unclear how GINS1 affects the progression of HCC. This study aims at investigating the mechanism by which GINS1 affects HCC cell proliferation and stemness. We performed bioinformatics analysis for determining GINS1 expression in HCC tissues, as well as the HCC patients' survival rate with different expression levels of GINS1. E2F transcription factor 1 (E2F1) was predicted as the upstream transcription factor of GINS1, and the binding relation between the two was verified by chromatin immunoprecipitation and dual-luciferase reporter assays. Quantitative real-time polymerase chain reaction was adopted to evaluate the expression of GINS1 and E2F1. The protein expression levels of GINS1, E2F1, and cell stemness-related genes (SOX-2, NANOG, OCT4, and CD133) were detected by Western blot. Afterward, the proliferative capacity and stemness of HCC tumor cells were determined through colony formation, cell counting kit-8, and sphere formation assays. Our study found the high expression of GINS1 and E2F1 in HCC, and overexpressed GINS1 markedly enhanced the sphere formation and proliferation of HCC cells, while silencing GINS1 led to the opposite results. Besides, E2F1 promoted the transcription of GINS1 by working as an upstream transcription factor. The results of the rescue experiment suggested that overexpressed E2F1 could offset the suppressive effect of GINS1 silencing on HCC cell stemness and proliferation. We demonstrated that the transcription factor E2F1 accelerated cell proliferation and stemness in HCC by activating GINS1 transcription. The results can provide new insight into the GINS1-related regulatory mechanism in HCC, which suggest that it may be an effective way for HCC treatment by targeting the E2F1/GINS1 axis.
    MeSH term(s) Humans ; Carcinoma, Hepatocellular/pathology ; Liver Neoplasms/metabolism ; E2F1 Transcription Factor/genetics ; E2F1 Transcription Factor/metabolism ; Cell Line, Tumor ; Cell Proliferation/genetics ; Gene Expression Regulation, Neoplastic ; DNA-Binding Proteins/genetics ; DNA-Binding Proteins/metabolism
    Chemical Substances E2F1 Transcription Factor ; E2F1 protein, human ; GINS1 protein, human ; DNA-Binding Proteins
    Language English
    Publishing date 2023-09-30
    Publishing country United States
    Document type Journal Article
    ZDB-ID 441790-2
    ISSN 2162-6537 ; 0731-8898 ; 0146-4779
    ISSN (online) 2162-6537
    ISSN 0731-8898 ; 0146-4779
    DOI 10.1615/JEnvironPatholToxicolOncol.2023048594
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: High-Level

    Yue, Mingyu / Liu, Mengsu / Gao, Song / Ren, Xuefeng / Zhou, Shenghu / Rao, Yijian / Zhou, Jingwen

    Journal of agricultural and food chemistry

    2024  Volume 72, Issue 8, Page(s) 4292–4300

    Abstract: ... ...

    Abstract (2
    MeSH term(s) Yarrowia/genetics ; Yarrowia/metabolism ; NADP/metabolism ; Metabolic Engineering ; Metabolic Networks and Pathways ; Flavanones
    Chemical Substances eriodictyol (Q520486B8Y) ; NADP (53-59-8) ; Flavanones
    Language English
    Publishing date 2024-02-16
    Publishing country United States
    Document type Journal Article
    ZDB-ID 241619-0
    ISSN 1520-5118 ; 0021-8561
    ISSN (online) 1520-5118
    ISSN 0021-8561
    DOI 10.1021/acs.jafc.3c08861
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Exosomal circ_0000722 derived from periodontal ligament stem cells undergoing osteogenic differentiation promotes osteoclastogenesis.

    Xie, Liangkun / Ren, Xuefeng / Yang, Zijie / Zhou, Ting / Zhang, Mingzhu / An, Wei / Guan, Zheng

    International immunopharmacology

    2024  Volume 128, Page(s) 111520

    Abstract: Periodontal ligament stem cells (PDLSCs), which are considered promising stem cells for regeneration of periodontal bony tissue, can also manipulate alveolar bone remodeling by exosomes. In this study, we investigated interactions between PDLSCs under ... ...

    Abstract Periodontal ligament stem cells (PDLSCs), which are considered promising stem cells for regeneration of periodontal bony tissue, can also manipulate alveolar bone remodeling by exosomes. In this study, we investigated interactions between PDLSCs under osteogenic differentiation and osteoclast precursors. The results showed that conditioned medium from PDLSCs under 5d osteogenic induction promoted osteoclastogenesis of RAW264.7 cells. The exosomes extracted from those conditioned media showed similar effects on osteoclastogenesis. Furthermore, exosomes from PDLSCs under 5d of osteogenic induction showed significantly high expression of circ_0000722, compared with exosomes from PDLSCs before osteogenic induction. Downregulation of circ_0000722 significantly attenuated the effect of PDLSC-derived exosomes on the osteoclastogenesis of RAW264.7 cells. Our findings suggested that exosomal circ_0000722 derived from periodontal ligament stem cells undergoing osteogenic differentiation might promote osteoclastogenesis by upregulating TRAF6 expression and activating downstream NF-κB and AKT signaling pathways.
    MeSH term(s) Osteogenesis ; Periodontal Ligament ; Cells, Cultured ; Stem Cells ; Cell Differentiation
    Language English
    Publishing date 2024-01-09
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 2043785-7
    ISSN 1878-1705 ; 1567-5769
    ISSN (online) 1878-1705
    ISSN 1567-5769
    DOI 10.1016/j.intimp.2024.111520
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: De Novo Biosynthesis of Lutein in

    Qin, Zhilei / Liu, Mengsu / Ren, Xuefeng / Zeng, Weizhu / Luo, Zhengshan / Zhou, Jingwen

    Journal of agricultural and food chemistry

    2024  Volume 72, Issue 10, Page(s) 5348–5357

    Abstract: Lutein is a high-value tetraterpenoid carotenoid that is widely used in feed, cosmetics, food, and drugs. Microbial synthesis of lutein is an important method for green and sustainable production, serving as an alternative to plant extraction methods. ... ...

    Abstract Lutein is a high-value tetraterpenoid carotenoid that is widely used in feed, cosmetics, food, and drugs. Microbial synthesis of lutein is an important method for green and sustainable production, serving as an alternative to plant extraction methods. However, an inadequate precursor supply and low catalytic efficiency of key pathway enzymes are the main reasons for the low efficacy of microbial synthesis of lutein. In this study, some strategies, such as enhancing the MVA pathway and localizing α-carotene synthase OluLCY within the subcellular organelles in
    MeSH term(s) Yarrowia/metabolism ; Lutein/metabolism ; Bioreactors ; Carotenoids/metabolism ; Metabolic Engineering/methods
    Chemical Substances alpha-carotene (45XWE1Z69V) ; Lutein (X72A60C9MT) ; Carotenoids (36-88-4)
    Language English
    Publishing date 2024-02-27
    Publishing country United States
    Document type Journal Article
    ZDB-ID 241619-0
    ISSN 1520-5118 ; 0021-8561
    ISSN (online) 1520-5118
    ISSN 0021-8561
    DOI 10.1021/acs.jafc.3c09080
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Metabolic Pathway Coupled with Fermentation Process Optimization for High-Level Production of Retinol in

    Ren, Xuefeng / Liu, Mengsu / Yue, Mingyu / Zeng, Weizhu / Zhou, Shenghu / Zhou, Jingwen / Xu, Sha

    Journal of agricultural and food chemistry

    2024  Volume 72, Issue 15, Page(s) 8664–8673

    Abstract: Retinol is a lipid-soluble form of vitamin A that is crucial for human visual and immune functions. The production of retinol through microbial fermentation has been the focus of recent exploration. However, the obtained titer remains limited and the ... ...

    Abstract Retinol is a lipid-soluble form of vitamin A that is crucial for human visual and immune functions. The production of retinol through microbial fermentation has been the focus of recent exploration. However, the obtained titer remains limited and the product is often a mixture of retinal, retinol, and retinoic acid, necessitating purification. To achieve efficient biosynthesis of retinol in
    MeSH term(s) Humans ; Vitamin A/metabolism ; Fermentation ; Yarrowia/genetics ; Yarrowia/metabolism ; Bioreactors ; beta Carotene/metabolism ; Metabolic Networks and Pathways ; Metabolic Engineering
    Chemical Substances Vitamin A (11103-57-4) ; beta Carotene (01YAE03M7J)
    Language English
    Publishing date 2024-04-02
    Publishing country United States
    Document type Journal Article
    ZDB-ID 241619-0
    ISSN 1520-5118 ; 0021-8561
    ISSN (online) 1520-5118
    ISSN 0021-8561
    DOI 10.1021/acs.jafc.4c00377
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Role of miR-498 Combined with CREB1 in Apoptosis and Invasion of Hepatoma Cell Line.

    Zhu, Ming / Gao, Shan / Ren, Xuefeng

    publication RETRACTED

    Computational and mathematical methods in medicine

    2022  Volume 2022, Page(s) 9621764

    Abstract: Objective: To detect the expression levels of miR-498 in the hepatoma cells and to clarify the biological roles of miR-498 in hepatoma by investigating CREB1, which is the target of miR-498. This study provides a new biomarker for the early diagnosis ... ...

    Abstract Objective: To detect the expression levels of miR-498 in the hepatoma cells and to clarify the biological roles of miR-498 in hepatoma by investigating CREB1, which is the target of miR-498. This study provides a new biomarker for the early diagnosis and targeted therapies for hepatoma.
    Methods: The expression of miR-498 between hepatoma cells and hepatocytes was detected by qRT-PCR. miR-498 was overexpressed in hepatoma cells, and then, flow cytometry was used to analyze the cell apoptosis rate. Cell migration and invasion ability were evaluated by Transwell migration assay and Matrigel invasion assay. The downstream targets of miR-498 were searched in the biological database or related software, and the result can be verified by luciferase reporter assay. The knockdown of the downstream target using RNA interference detected its biological functions in hepatoma cells and was confirmed by cotransfection experiments.
    Results: miR-498 was downregulated in hepatoma cell lines compared with hepatocytes. The overexpression of miR-498 significantly promoted apoptosis. Luciferase reporter assays showed that miR-498 could target CREB1 3'UTR and CREB1 was one of the targets of miR-498. Knockdown of CREB1 also inhibited hepatoma cells' malignant potential and increased the apoptosis rate of hepatoma cells. CREB1 was able to alleviate the changes caused by miR-498 overexpression.
    Conclusions: miR-498 is downregulated in hepatoma cell lines. Therefore, miR-498 can be one of the potential molecular markers for hepatoma diagnosis. miR-498 plays a role in tumor suppression through regulating CREB1.
    MeSH term(s) 3' Untranslated Regions ; Apoptosis/genetics ; Carcinoma, Hepatocellular/genetics ; Carcinoma, Hepatocellular/metabolism ; Carcinoma, Hepatocellular/pathology ; Cell Movement/genetics ; Computational Biology ; Cyclic AMP Response Element-Binding Protein/antagonists & inhibitors ; Cyclic AMP Response Element-Binding Protein/genetics ; Cyclic AMP Response Element-Binding Protein/metabolism ; Gene Expression Regulation, Neoplastic ; Gene Knockdown Techniques ; Hep G2 Cells ; Humans ; Liver Neoplasms/genetics ; Liver Neoplasms/metabolism ; Liver Neoplasms/pathology ; MicroRNAs/genetics ; MicroRNAs/metabolism ; Neoplasm Invasiveness/genetics ; Up-Regulation
    Chemical Substances 3' Untranslated Regions ; CREB1 protein, human ; Cyclic AMP Response Element-Binding Protein ; MIRN498 microRNA, human ; MicroRNAs
    Language English
    Publishing date 2022-02-24
    Publishing country United States
    Document type Journal Article ; Retracted Publication
    ZDB-ID 2252430-7
    ISSN 1748-6718 ; 1748-670X ; 1027-3662
    ISSN (online) 1748-6718
    ISSN 1748-670X ; 1027-3662
    DOI 10.1155/2022/9621764
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Three-step docking by WIPI2, ATG16L1, and ATG3 delivers LC3 to the phagophore.

    Rao, Shanlin / Skulsuppaisarn, Marvin / Strong, Lisa M / Ren, Xuefeng / Lazarou, Michael / Hurley, James H / Hummer, Gerhard

    Science advances

    2024  Volume 10, Issue 6, Page(s) eadj8027

    Abstract: The covalent attachment of ubiquitin-like LC3 proteins (microtubule-associated proteins 1A/1B light chain 3) prepares the autophagic membrane for cargo recruitment. We resolve key steps in LC3 lipidation by combining molecular dynamics simulations and ... ...

    Abstract The covalent attachment of ubiquitin-like LC3 proteins (microtubule-associated proteins 1A/1B light chain 3) prepares the autophagic membrane for cargo recruitment. We resolve key steps in LC3 lipidation by combining molecular dynamics simulations and experiments in vitro and in cellulo. We show how the E3-like ligaseautophagy-related 12 (ATG12)-ATG5-ATG16L1 in complex with the E2-like conjugase ATG3 docks LC3 onto the membrane in three steps by (i) the phosphatidylinositol 3-phosphate effector protein WD repeat domain phosphoinositide-interacting protein 2 (WIPI2), (ii) helix α2 of ATG16L1, and (iii) a membrane-interacting surface of ATG3. Phosphatidylethanolamine (PE) lipids concentrate in a region around the thioester bond between ATG3 and LC3, highlighting residues with a possible role in the catalytic transfer of LC3 to PE, including two conserved histidines. In a near-complete pathway from the initial membrane recruitment to the LC3 lipidation reaction, the three-step targeting of the ATG12-ATG5-ATG16L1 machinery establishes a high level of regulatory control.
    MeSH term(s) Autophagy-Related Proteins/genetics ; Autophagy-Related Proteins/metabolism ; Autophagosomes/metabolism ; Microtubule-Associated Proteins/metabolism ; Phagocytosis ; Autophagy
    Chemical Substances Autophagy-Related Proteins ; Microtubule-Associated Proteins
    Language English
    Publishing date 2024-02-07
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2810933-8
    ISSN 2375-2548 ; 2375-2548
    ISSN (online) 2375-2548
    ISSN 2375-2548
    DOI 10.1126/sciadv.adj8027
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  8. Article ; Online: Additives for Aqueous Zinc-Ion Batteries: Recent Progress, Mechanism Analysis, and Future Perspectives.

    Cao, Jianghui / Zhao, Fang / Guan, Weixin / Yang, Xiaoxuan / Zhao, Qidong / Gao, Liguo / Ren, Xuefeng / Wu, Gang / Liu, Anmin

    Small (Weinheim an der Bergstrasse, Germany)

    2024  , Page(s) e2400221

    Abstract: Aqueous zinc-ion batteries (ZIBs) stand out as a promising next-generation electrochemical energy storage technology, offering notable advantages such as high specific capacity, enhanced safety, and cost-effectiveness. However, the application of aqueous ...

    Abstract Aqueous zinc-ion batteries (ZIBs) stand out as a promising next-generation electrochemical energy storage technology, offering notable advantages such as high specific capacity, enhanced safety, and cost-effectiveness. However, the application of aqueous electrolytes introduces challenges: Zn dendrite formation and parasitic reactions at the anode, as well as dissolution, electrostatic interaction, and by-product formation at the cathode. In addressing these electrode-centric problems, additive engineering has emerged as an effective strategy. This review delves into the latest advancements in electrolyte additives for ZIBs, emphasizing their role in resolving the existing issues. Key focus areas include improving morphology and reducing side reactions during battery cycling using synergistic effects of modulating anode interface regulation, zinc facet control, and restructuring of hydrogen bonds and solvation sheaths. Special attention is given to the efficacy of amino acids and zwitterions due to their multifunction to improve the cycling performance of batteries concerning cycle stability and lifespan. Additionally, the recent additive advancements are studied for low-temperature and extreme weather applications meticulously. This review concludes with a holistic look at the future of additive engineering, underscoring its critical role in advancing ZIB performance amidst the complexities and challenges of electrolyte additives.
    Language English
    Publishing date 2024-04-08
    Publishing country Germany
    Document type Journal Article ; Review
    ZDB-ID 2168935-0
    ISSN 1613-6829 ; 1613-6810
    ISSN (online) 1613-6829
    ISSN 1613-6810
    DOI 10.1002/smll.202400221
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Enhancing Lithium-Sulfur Battery Performance by MXene, Graphene, and Ionic Liquids: A DFT Investigation.

    Cao, Jianghui / Xue, Sensen / Zhang, Jian / Ren, Xuefeng / Gao, Liguo / Ma, Tingli / Liu, Anmin

    Molecules (Basel, Switzerland)

    2023  Volume 29, Issue 1

    Abstract: The efficacy of lithium-sulfur (Li-S) batteries crucially hinges on the sulfur immobilization process, representing a pivotal avenue for bolstering their operational efficiency and durability. This dissertation primarily tackles the formidable challenge ... ...

    Abstract The efficacy of lithium-sulfur (Li-S) batteries crucially hinges on the sulfur immobilization process, representing a pivotal avenue for bolstering their operational efficiency and durability. This dissertation primarily tackles the formidable challenge posed by the high solubility of polysulfides in electrolyte solutions. Quantum chemical computations were leveraged to scrutinize the interactions of MXene materials, graphene (Gr) oxide, and ionic liquids with polysulfides, yielding pivotal binding energy metrics. Comparative assessments were conducted with the objective of pinpointing MXene materials, with a specific focus on d-Ti
    Language English
    Publishing date 2023-12-19
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 1413402-0
    ISSN 1420-3049 ; 1431-5165 ; 1420-3049
    ISSN (online) 1420-3049
    ISSN 1431-5165 ; 1420-3049
    DOI 10.3390/molecules29010002
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  10. Article ; Online: The management of gingival fenestration: A series of three cases.

    Ren, Xuefeng / Liu, Tao / Huo, Lijun / Rao, Nanquan / Wang, Lixiao / Luo, Qi / Zhang, Mingzhu

    The International journal of periodontics & restorative dentistry

    2023  

    Abstract: Objectives: The aim of this article is to introduce three treatments for patients with gingival fenestration as a result of chronic apical periodontitis. Gingival fenestration is a relatively uncommon soft tissue lesion in which the root apex is exposed ...

    Abstract Objectives: The aim of this article is to introduce three treatments for patients with gingival fenestration as a result of chronic apical periodontitis. Gingival fenestration is a relatively uncommon soft tissue lesion in which the root apex is exposed in the oral environment after the destruction of the overlying buccal bone plate and mucosa. At present, no clear etiology or treatment guidelines exist for gingival fenestration. This article reports three successfully treated cases of gingival fenestration associated with chronic periapical infection. This report can help contribute to treatment guidelines for gingival fenestration.
    Methods: All cases were treated with apicoectomy in conjunction with a connective tissue graft (CTG). According to the different conditions of the patients, we used some slightly different treatment methods during the operation. In case 1, we treated gingival fenestration in the mandibular left first premolar by endodontic therapy with root-end resection and retrograde filling and regenerative surgical therapy using a xenograft and CTG. In case 2, we treated gingival fenestration in the maxillary left lateral incisor by endodontic therapy with root-end resection and retrograde filling in vitro and regenerative surgical therapy using advanced platelet-rich fibrin (A-PRF) and CTG. In case 3, we treated gingival fenestration in the mandibular left second premolar by endodontic therapy with root-end resection and retrograde filling and regenerative surgical therapy using CTG.
    Results: Endodontic treatment was combined with periodontal surgery to achieve predictable treatment results. After 13 to 25 months of follow-up, all cases showed that the gingival fenestration had healed well, and the patients had no discomfort.
    Conclusions: These three cases show the possibility of using apical excision combined with a CTG and/or bone graft/PRF in the treatment of gingival fenestration. Reporting these three cases may help advance the field of treatments for gingival fenestration.
    Language English
    Publishing date 2023-10-11
    Publishing country United States
    Document type Journal Article
    ISSN 1945-3388
    ISSN (online) 1945-3388
    DOI 10.11607/prd.6861
    Database MEDical Literature Analysis and Retrieval System OnLINE

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