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Article: Mystery unveiled: Diacanthodes Singer – a lineage within the core polyporoid clade

Robledo, Gerardo Lucio / Palacio, Melissa / Urcelay, Carlos / Vasco-Palacios, Aída M / Crespo, Esteban / Popoff, Orlando / Põldmaa, Kadri / Ryvarden, Leif / Costa-Rezende, Diogo H

Systematics and biodiversity. 2020 Aug. 17, v. 18, no. 6

2020

Abstract: Diacanthodes (Polyporales, Basidiomycota) is a fungal genus with stipitate basidiomata and a combination of ornamented and dextrinoid basidiospores that is unique among the poroid fungi. Although some hypotheses based on morphological features speculated ...

Abstract	Diacanthodes (Polyporales, Basidiomycota) is a fungal genus with stipitate basidiomata and a combination of ornamented and dextrinoid basidiospores that is unique among the poroid fungi. Although some hypotheses based on morphological features speculated about the phylogenetic relationships of the taxon, they have never been tested based on molecular data. We performed molecular phylogenetic analyses including specimens of Diacanthodes from the Neotropics and Africa using the internal transcribed spacers (ITS1-5.8S-ITS2 = ITS) and the D1–D2 domains of the 28S gene of the nuclear rDNA regions, as well as the translation elongation factor 1-alpha (TEF-1α) protein-coding gene. Our study revealed Diacanthodes as a member of the ‘core polyporoid’ clade within the Polyporales. Two new species from South America: Diacanthodes cerebriporoides and D. neotropicalis, a new combination D. coffeae from Africa and notes on the other Diacanthodes species are presented. Basidiospore morphology in Diacanthodes and related genera is discussed in the phylogenetic context.
Keywords	Neotropics ; Polyporales ; basidiomata ; basidiospores ; fungi ; genes ; internal transcribed spacers ; new combination ; new species ; peptide elongation factors ; phylogeny ; ribosomal DNA ; Africa ; South America
Language	English
Dates of publication	2020-0817
Size	p. 538-556.
Publishing place	Taylor & Francis
Document type	Article
ZDB-ID	2110629-0
ISSN	1478-0933 ; 1477-2000
ISSN (online)	1478-0933
ISSN	1477-2000
DOI	10.1080/14772000.2020.1776784
Database	NAL-Catalogue (AGRICOLA)

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Article: The Neotropical Fomitiporia (Hymenochaetales, Basidiomycota): the redefinition of F. apiahyna s.s. allows revealing a high hidden species diversity

Alves-Silva, Genivaldo / Reck, Mateus Arduvino / da Silveira, Rosa Mara Borges / Bittencourt, Felipe / Robledo, Gerardo Lucio / Góes-Neto, Aristóteles / Drechsler-Santos, Elisandro Ricardo

Mycological progress. 2020 Aug., v. 19, no. 8

2020

Abstract: The Neotropical species Fomitiporia apiahyna was repeatedly shown to form a lineage with multiple sublineages that could correspond to different phylogenetic species, hence forming a highly diverse species complex. Due to their inconspicuous ... ...

Abstract	The Neotropical species Fomitiporia apiahyna was repeatedly shown to form a lineage with multiple sublineages that could correspond to different phylogenetic species, hence forming a highly diverse species complex. Due to their inconspicuous morphological features, species delimitation in this complex needs an integrative taxonomic perspective. In this study, we have performed multilocus molecular (ITS, ncLSU, TEF-1α, and RPB2) analyses in order to delimit the phylogenetic placement of specimens previously determined as F. apiahyna and to determine the phylogenetic diversity in term of clades that could be equated to species. Both morphological, ecological, and distribution data have been integrated to better delimit species boundaries. The F. apiahyna sensu lato lineage was shown to encompass four clades, corresponding to the four species: F. apiahyna sensu stricto, which is confirmed based on specimens originating from the type locality and here epitypified; F. nubicola sp. nov., proposed based on specimens found on Drimys angustifolia and Drimys sp., a relic plant species distributed exclusively in fragmented forests of high altitude areas in southern Brazil; F. conyana sp. nov., proposed from specimens previously suggested as the closest to F. apiahyna s.s.; and F. murrilli sp. nov., proposed based on specimens found on the locally exotic Eucalyptus sp. and another undefined angiosperm in southern Brazil. Additionally, Phellinus elegans emerged from the synonymy of F. apiahyna and the new combination Fomitiporia elegans is proposed. An identification key to the Neotropical species with pileate basidioma also is provided. Phylogenetically delimited species are strongly supported by ecological data, and in the case of F. conyana by clear-cut morphological data. It is expected that, with the redefinition of F. apiahyna s.s., other phylogenetic species will emerge in the near future.
Keywords	Drimys ; Eucalyptus ; Fomitiporia ; Neotropics ; Phellinus ; altitude ; basidiomata ; clearcutting ; new combination ; phylogeny ; species diversity ; taxonomic keys ; type collections ; Brazil
Language	English
Dates of publication	2020-08
Size	p. 769-790.
Publishing place	Springer Berlin Heidelberg
Document type	Article
Note	NAL-AP-2-clean
ZDB-ID	2226747-5
ISSN	1861-8952 ; 1617-416X
ISSN (online)	1861-8952
ISSN	1617-416X
DOI	10.1007/s11557-020-01593-5
Database	NAL-Catalogue (AGRICOLA)

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Article ; Online: Decrypting the Polyporus dictyopus complex: Recovery of Atroporus Ryvarden and segregation of Neodictyopus gen. nov. (Polyporales, Basidiomyocta).

Palacio, Melissa / Robledo, Gerardo Lucio / Reck, Mateus Arduvino / Grassi, Emanuel / Góes-Neto, Aristóteles / Drechsler-Santos, Elisandro Ricardo

PloS one

2017 Volume 12, Issue 10, Page(s) e0186183

Abstract: Polyporus dictyopus, with a large number of heterotypic synonyms, has been traditionally considered a species complex, characterized by wide morphological variation and geographic distribution. Thus, neotropical specimens previously identified as P. ... ...

Abstract	Polyporus dictyopus, with a large number of heterotypic synonyms, has been traditionally considered a species complex, characterized by wide morphological variation and geographic distribution. Thus, neotropical specimens previously identified as P. dictyopus from Amazonia, Cerrado and Atlantic Forest biomes were studied based on detailed macro- and micromorphological examination and phylogenetic analyses, using distinct ribosomal and protein-coding genomic regions: the nuclear ribosomal internal transcribed spacer (nrITS), nuclear ribosomal large subunit (nrLSU), and RNA polymerase II second subunit (RPB2). Two unrelated generic lineages, each one represented by different species, are reported: Atroporus is recovered and re-circumscribed to include A. diabolicus and A. rufoatratus comb. nov.; Neodictyopus gen. nov. is proposed to accommodate N. dictyopus comb. nov. and two new species, N. atlanticae and N. gugliottae. Our study showed that at least five distinct species were hidden under the name P. dictyopus. Detailed descriptions, pictures, illustrations, and a key are provided for Atroporus and Neodictyopus species.
Language	English
Publishing date	2017
Publishing country	United States
Document type	Journal Article
ISSN	1932-6203
ISSN (online)	1932-6203
DOI	10.1371/journal.pone.0186183
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Article: Considerations and consequences of allowing DNA sequence data as types of fungal taxa.

Zamora, Juan Carlos / Svensson, Måns / Kirschner, Roland / Olariaga, Ibai / Ryman, Svengunnar / Parra, Luis Alberto / Geml, József / Rosling, Anna / Adamčík, Slavomír / Ahti, Teuvo / Aime, M Catherine / Ainsworth, A Martyn / Albert, László / Albertó, Edgardo / García, Alberto Altés / Ageev, Dmitry / Agerer, Reinhard / Aguirre-Hudson, Begoña / Ammirati, Joe /

Andersson, Harry / Angelini, Claudio / Antonín, Vladimír / Aoki, Takayuki / Aptroot, André / Argaud, Didier / Sosa, Blanca Imelda Arguello / Aronsen, Arne / Arup, Ulf / Asgari, Bita / Assyov, Boris / Atienza, Violeta / Bandini, Ditte / Baptista-Ferreira, João Luís / Baral, Hans-Otto / Baroni, Tim / Barreto, Robert Weingart / Beker, Henry / Bell, Ann / Bellanger, Jean-Michel / Bellù, Francesco / Bemmann, Martin / Bendiksby, Mika / Bendiksen, Egil / Bendiksen, Katriina / Benedek, Lajos / Bérešová-Guttová, Anna / Berger, Franz / Berndt, Reinhard / Bernicchia, Annarosa / Biketova, Alona Yu / Bizio, Enrico / Bjork, Curtis / Boekhout, Teun / Boertmann, David / Böhning, Tanja / Boittin, Florent / Boluda, Carlos G / Boomsluiter, Menno W / Borovička, Jan / Brandrud, Tor Erik / Braun, Uwe / Brodo, Irwin / Bulyonkova, Tatiana / Burdsall, Harold H / Buyck, Bart / Burgaz, Ana Rosa / Calatayud, Vicent / Callac, Philippe / Campo, Emanuele / Candusso, Massimo / Capoen, Brigitte / Carbó, Joaquim / Carbone, Matteo / Castañeda-Ruiz, Rafael F / Castellano, Michael A / Chen, Jie / Clerc, Philippe / Consiglio, Giovanni / Corriol, Gilles / Courtecuisse, Régis / Crespo, Ana / Cripps, Cathy / Crous, Pedro W / da Silva, Gladstone Alves / da Silva, Meiriele / Dam, Marjo / Dam, Nico / Dämmrich, Frank / Das, Kanad / Davies, Linda / De Crop, Eske / De Kesel, Andre / De Lange, Ruben / De Madrignac Bonzi, Bárbara / Dela Cruz, Thomas Edison E / Delgat, Lynn / Demoulin, Vincent / Desjardin, Dennis E / Diederich, Paul / Dima, Bálint / Dios, Maria Martha / Divakar, Pradeep Kumar / Douanla-Meli, Clovis / Douglas, Brian / Drechsler-Santos, Elisandro Ricardo / Dyer, Paul S / Eberhardt, Ursula / Ertz, Damien / Esteve-Raventós, Fernando / Salazar, Javier Angel Etayo / Evenson, Vera / Eyssartier, Guillaume / Farkas, Edit / Favre, Alain / Fedosova, Anna G / Filippa, Mario / Finy, Péter / Flakus, Adam / Fos, Simón / Fournier, Jacques / Fraiture, André / Franchi, Paolo / Molano, Ana Esperanza Franco / Friebes, Gernot / Frisch, Andreas / Fryday, Alan / Furci, Giuliana / Márquez, Ricardo Galán / Garbelotto, Matteo / García-Martín, Joaquina María / Otálora, Mónica A García / Sánchez, Dania García / Gardiennet, Alain / Garnica, Sigisfredo / Benavent, Isaac Garrido / Gates, Genevieve / da Cruz Lima Gerlach, Alice / Ghobad-Nejhad, Masoomeh / Gibertoni, Tatiana B / Grebenc, Tine / Greilhuber, Irmgard / Grishkan, Bella / Groenewald, Johannes Z / Grube, Martin / Gruhn, Gérald / Gueidan, Cécile / Gulden, Gro / Gusmão, Luis Fp / Hafellner, Josef / Hairaud, Michel / Halama, Marek / Hallenberg, Nils / Halling, Roy E / Hansen, Karen / Harder, Christoffer Bugge / Heilmann-Clausen, Jacob / Helleman, Stip / Henriot, Alain / Hernandez-Restrepo, Margarita / Herve, Raphaël / Hobart, Caroline / Hoffmeister, Mascha / Høiland, Klaus / Holec, Jan / Holien, Håkon / Hughes, Karen / Hubka, Vit / Huhtinen, Seppo / Ivančević, Boris / Jagers, Marian / Jaklitsch, Walter / Jansen, AnnaElise / Jayawardena, Ruvishika S / Jeppesen, Thomas Stjernegaard / Jeppson, Mikael / Johnston, Peter / Jørgensen, Per Magnus / Kärnefelt, Ingvar / Kalinina, Liudmila B / Kantvilas, Gintaras / Karadelev, Mitko / Kasuya, Taiga / Kautmanová, Ivona / Kerrigan, Richard W / Kirchmair, Martin / Kiyashko, Anna / Knapp, Dániel G / Knudsen, Henning / Knudsen, Kerry / Knutsson, Tommy / Kolařík, Miroslav / Kõljalg, Urmas / Košuthová, Alica / Koszka, Attila / Kotiranta, Heikki / Kotkova, Vera / Koukol, Ondřej / Kout, Jiří / Kovács, Gábor M / Kříž, Martin / Kruys, Åsa / Kučera, Viktor / Kudzma, Linas / Kuhar, Francisco / Kukwa, Martin / Arun Kumar, T K / Kunca, Vladimír / Kušan, Ivana / Kuyper, Thomas W / Lado, Carlos / Læssøe, Thomas / Lainé, Patrice / Langer, Ewald / Larsson, Ellen / Larsson, Karl-Henrik / Laursen, Gary / Lechat, Christian / Lee, Serena / Lendemer, James C / Levin, Laura / Lindemann, Uwe / Lindström, Håkan / Liu, Xingzhong / Hernandez, Regulo Carlos Llarena / Llop, Esteve / Locsmándi, Csaba / Lodge, Deborah Jean / Loizides, Michael / Lőkös, László / Luangsa-Ard, Jennifer / Lüderitz, Matthias / Lumbsch, Thorsten / Lutz, Matthias / Mahoney, Dan / Malysheva, Ekaterina / Malysheva, Vera / Manimohan, Patinjareveettil / Marin-Felix, Yasmina / Marques, Guilhermina / Martínez-Gil, Rubén / Marson, Guy / Mata, Gerardo / Matheny, P Brandon / Mathiassen, Geir Harald / Matočec, Neven / Mayrhofer, Helmut / Mehrabi, Mehdi / Melo, Ireneia / Mešić, Armin / Methven, Andrew S / Miettinen, Otto / Romero, Ana M Millanes / Miller, Andrew N / Mitchell, James K / Moberg, Roland / Moreau, Pierre-Arthur / Moreno, Gabriel / Morozova, Olga / Morte, Asunción / Muggia, Lucia / González, Guillermo Muñoz / Myllys, Leena / Nagy, István / Nagy, László G / Neves, Maria Alice / Niemelä, Tuomo / Nimis, Pier Luigi / Niveiro, Nicolas / Noordeloos, Machiel E / Nordin, Anders / Noumeur, Sara Raouia / Novozhilov, Yuri / Nuytinck, Jorinde / Ohenoja, Esteri / Fiuza, Patricia Oliveira / Orange, Alan / Ordynets, Alexander / Ortiz-Santana, Beatriz / Pacheco, Leticia / Pál-Fám, Ferenc / Palacio, Melissa / Palice, Zdeněk / Papp, Viktor / Pärtel, Kadri / Pawlowska, Julia / Paz, Aurelia / Peintner, Ursula / Pennycook, Shaun / Pereira, Olinto Liparini / Daniëls, Pablo Pérez / Pérez-De-Gregorio Capella, Miquel À / Del Amo, Carlos Manuel Pérez / Gorjón, Sergio Pérez / Pérez-Ortega, Sergio / Pérez-Vargas, Israel / Perry, Brian A / Petersen, Jens H / Petersen, Ronald H / Pfister, Donald H / Phukhamsakda, Chayanard / Piątek, Marcin / Piepenbring, Meike / Pino-Bodas, Raquel / Esquivel, Juan Pablo Pinzón / Pirot, Paul / Popov, Eugene S / Popoff, Orlando / Álvaro, María Prieto / Printzen, Christian / Psurtseva, Nadezhda / Purahong, Witoon / Quijada, Luis / Rambold, Gerhard / Ramírez, Natalia A / Raja, Huzefa / Raspé, Olivier / Raymundo, Tania / Réblová, Martina / Rebriev, Yury A / de Dios Reyes García, Juan / Ripoll, Miguel Ángel Ribes / Richard, Franck / Richardson, Mike J / Rico, Víctor J / Robledo, Gerardo Lucio / Barbosa, Flavia Rodrigues / Rodriguez-Caycedo, Cristina / Rodriguez-Flakus, Pamela / Ronikier, Anna / Casas, Luis Rubio / Rusevska, Katerina / Saar, Günter / Saar, Irja / Salcedo, Isabel / Martínez, Sergio M Salcedo / Montoya, Carlos A Salvador / Sánchez-Ramírez, Santiago / Sandoval-Sierra, J Vladimir / Santamaria, Sergi / Monteiro, Josiane Santana / Schroers, Hans Josef / Schulz, Barbara / Schmidt-Stohn, Geert / Schumacher, Trond / Senn-Irlet, Beatrice / Ševčíková, Hana / Shchepin, Oleg / Shirouzu, Takashi / Shiryaev, Anton / Siepe, Klaus / Sir, Esteban B / Sohrabi, Mohammad / Soop, Karl / Spirin, Viacheslav / Spribille, Toby / Stadler, Marc / Stalpers, Joost / Stenroos, Soili / Suija, Ave / Sunhede, Stellan / Svantesson, Sten / Svensson, Sigvard / Svetasheva, Tatyana Yu / Świerkosz, Krzysztof / Tamm, Heidi / Taskin, Hatira / Taudière, Adrien / Tedebrand, Jan-Olof / Lahoz, Raúl Tena / Temina, Marina / Thell, Arne / Thines, Marco / Thor, Göran / Thüs, Holger / Tibell, Leif / Tibell, Sanja / Timdal, Einar / Tkalčec, Zdenko / Tønsberg, Tor / Trichies, Gérard / Triebel, Dagmar / Tsurykau, Andrei / Tulloss, Rodham E / Tuovinen, Veera / Sosa, Miguel Ulloa / Urcelay, Carlos / Valade, François / Garza, Ricardo Valenzuela / van den Boom, Pieter / Van Vooren, Nicolas / Vasco-Palacios, Aida M / Vauras, Jukka / Velasco Santos, Juan Manuel / Vellinga, Else / Verbeken, Annemieke / Vetlesen, Per / Vizzini, Alfredo / Voglmayr, Hermann / Volobuev, Sergey / von Brackel, Wolfgang / Voronina, Elena / Walther, Grit / Watling, Roy / Weber, Evi / Wedin, Mats / Weholt, Øyvind / Westberg, Martin / Yurchenko, Eugene / Zehnálek, Petr / Zhang, Huang / Zhurbenko, Mikhail P / Ekman, Stefan

IMA fungus

2018 Volume 9, Issue 1, Page(s) 167–175

Abstract: Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological ... ...

Abstract	Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological diversity) with nomenclature (an artificial agreement to name biological diversity). Two proposals to amend the International Code of Nomenclature for algae, fungi, and plants (ICN), allowing DNA sequences alone (of any region and extent) to serve as types of taxon names for voucherless fungi (mainly putative taxa from environmental DNA sequences), have been submitted to be voted on at the 11
Language	English
Publishing date	2018-05-24
Publishing country	England
Document type	Journal Article
ZDB-ID	2666116-0
ISSN	2210-6359 ; 2210-6340
ISSN (online)	2210-6359
ISSN	2210-6340
DOI	10.5598/imafungus.2018.09.01.10
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Article ; Online: Considerations and consequences of allowing DNA sequence data as types of fungal taxa.

IMA fungus

2018

Abstract	Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological diversity) with nomenclature (an artificial agreement to name biological diversity). Two proposals to amend the International Code of Nomenclature for algae, fungi, and plants (ICN), allowing DNA sequences alone (of any region and extent) to serve as types of taxon names for voucherless fungi (mainly putative taxa from environmental DNA sequences), have been submitted to be voted on at the 11th International Mycological Congress (Puerto Rico, July 2018). We consider various genetic processes affecting the distribution of alleles among taxa and find that alleles may not consistently and uniquely represent the species within which they are contained. Should the proposals be accepted, the meaning of nomenclatural types would change in a fundamental way from physical objects as sources of data to the data themselves. Such changes are conducive to irreproducible science, the potential typification on artefactual data, and massive creation of names with low information content, ultimately causing nomenclatural instability and unnecessary work for future researchers that would stall future explorations of fungal diversity. We conclude that the acceptance of DNA sequences alone as types of names of taxa, under the terms used in the current proposals, is unnecessary and would not solve the problem of naming putative taxa known only from DNA sequences in a scientifically defensible way. As an alternative, we highlight the use of formulas for naming putative taxa (candidate taxa) that do not require any modification of the ICN.
Keywords	IMC11 ; nomenclature ; speciation ; taxonomy ; typification ; voucherless fungi
Subject code	612
Publishing date	2018-06-01
Publishing country	de
Document type	Article ; Online
Database	BASE - Bielefeld Academic Search Engine (life sciences selection)

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Article ; Online: Considerations and consequences of allowing DNA sequence data as types of fungal taxa.

IMA fungus

2018

Abstract	Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological diversity) with nomenclature (an artificial agreement to name biological diversity). Two proposals to amend the International Code of Nomenclature for algae, fungi, and plants (ICN), allowing DNA sequences alone (of any region and extent) to serve as types of taxon names for voucherless fungi (mainly putative taxa from environmental DNA sequences), have been submitted to be voted on at the 11th International Mycological Congress (Puerto Rico, July 2018). We consider various genetic processes affecting the distribution of alleles among taxa and find that alleles may not consistently and uniquely represent the species within which they are contained. Should the proposals be accepted, the meaning of nomenclatural types would change in a fundamental way from physical objects as sources of data to the data themselves. Such changes are conducive to irreproducible science, the potential typification on artefactual data, and massive creation of names with low information content, ultimately causing nomenclatural instability and unnecessary work for future researchers that would stall future explorations of fungal diversity. We conclude that the acceptance of DNA sequences alone as types of names of taxa, under the terms used in the current proposals, is unnecessary and would not solve the problem of naming putative taxa known only from DNA sequences in a scientifically defensible way. As an alternative, we highlight the use of formulas for naming putative taxa (candidate taxa) that do not require any modification of the ICN.
Keywords	IMC11 ; nomenclature ; speciation ; taxonomy ; typification ; voucherless fungi
Subject code	612
Publishing date	2018-06-01
Publishing country	de
Document type	Article ; Online
Database	BASE - Bielefeld Academic Search Engine (life sciences selection)

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Article: Mystery unveiled: Diacanthodes Singer – a lineage within the core polyporoid clade

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Article: The Neotropical Fomitiporia (Hymenochaetales, Basidiomycota): the redefinition of F. apiahyna s.s. allows revealing a high hidden species diversity

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Article ; Online: Decrypting the Polyporus dictyopus complex: Recovery of Atroporus Ryvarden and segregation of Neodictyopus gen. nov. (Polyporales, Basidiomyocta).

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Article: Considerations and consequences of allowing DNA sequence data as types of fungal taxa.

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Article ; Online: Considerations and consequences of allowing DNA sequence data as types of fungal taxa.

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Article ; Online: Considerations and consequences of allowing DNA sequence data as types of fungal taxa.

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