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  1. Article: Associations between Avocado Intake and Lower Rates of Incident Type 2 Diabetes in US Adults with Hispanic/Latino Ancestry.

    Wood, Alexis C / Senn, Mackenzie K / Rotter, Jerome I

    Journal of diabetes mellitus

    2023  Volume 13, Issue 2, Page(s) 116–129

    Abstract: Background/purpose: Hispanic/Latinos in the US are at increased risk for type 2 diabetes (T2D). Data suggest that avocado intake is associated with better glycemic control, but whether this translates to protection from T2D has not been studied. The ... ...

    Abstract Background/purpose: Hispanic/Latinos in the US are at increased risk for type 2 diabetes (T2D). Data suggest that avocado intake is associated with better glycemic control, but whether this translates to protection from T2D has not been studied. The goal of the current analyses was to examine whether consuming avocados at baseline is associated with lower incident T2D over a six-year period, compared to not consuming avocados at baseline.
    Subjects/methods: Using data from a large population of US adults with Hispanic ancestry, without known or unknown T2D at baseline (N=6,159), participants were classified as avocado consumers (N=983) or non-consumers (N=5,176) based on the mean of two 24-hour dietary recalls. Cox proportional hazard models estimated the association of avocado consumption with incident T2D (N=656 cases) over a six-year follow-up period, in the population as a whole, and separately in those with normoglycemia vs. prediabetes at baseline. A set of three sequential models were run: the first controlling only for sociodemographic factors ("minimally adjusted" models), the second for these and health behaviors ("fully adjusted" models), and a third for both sets of covariates and also body mass index (BMI; "fully adjusted + BMI" models).
    Results: In the population as a whole, avocado intake at baseline was associated with reduced incident T2D in both the minimally adjusted (hazard ratio [HR] (+/- 95% confidence intervals [CIs]): 0.70 (0.52 - 0.94), P=.04) and the fully adjusted models (HR: 0.72 (0.54-0.97), P=.03). This association was observed in both those with prediabetes and with normoglycemia at baseline, but only reached significance in those with prediabetes (minimally adjusted model: HR: 0.68 (0.48-0.97), P=.03; fully adjusted model: HR: 0.69 (0.48-0.98), P=.04), not in those with normoglycemia (minimally adjusted model: HR: 0.86 (0.45-1.65), P=.65; fully adjusted model: HR: 0.80 (0.41-1.55), P=.50). In models which additionally controlled for BMI ("fully adjusted + BMI model"), the associations were slightly attenuated (overall population: HR: 0.79 (0.59-1.06), P=.60; normoglycemia: HR: 0.83 (0.42-1.64), P=.60; prediabetes: HR= 0.75 (0.54 - 1.05), P=0.09).
    Conclusions: In our longitudinal analyses, adults with Hispanic / Latino ancestry who consumed avocado were less likely to develop T2D than those who did not consume avocado at baseline, especially if they had prediabetes at baseline.
    Language English
    Publishing date 2023-04-25
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2655724-1
    ISSN 2160-5858 ; 2160-5831
    ISSN (online) 2160-5858
    ISSN 2160-5831
    DOI 10.4236/jdm.2023.132010
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Synonymous Variants of Uncertain Silence.

    Giacoletto, Christopher J / Rotter, Jerome I / Grody, Wayne W / Schiller, Martin R

    International journal of molecular sciences

    2023  Volume 24, Issue 13

    Abstract: Synonymous variants, traditionally regarded as silent mutations due to their lack of impact on protein sequence, structure and function, have been the subject of increasing scrutiny. This commentary explores the emerging evidence challenging the notion ... ...

    Abstract Synonymous variants, traditionally regarded as silent mutations due to their lack of impact on protein sequence, structure and function, have been the subject of increasing scrutiny. This commentary explores the emerging evidence challenging the notion of synonymous variants as functionally inert. Analysis of the activity of 70 synonymous variants in the HIV Tat transcription factor revealed that 50% of the variants exhibited significant deviations from wild-type activity. Our analysis supports previous work and raises important questions about the broader impact of non-silent synonymous variants in human genes. Considering the potential functional implications, the authors propose classifying such variants as "synonymous variants of uncertain silence" (sVUS), highlighting the need for cautious interpretation and further investigations in clinical and genetic testing settings.
    MeSH term(s) Humans ; Silent Mutation ; Transcription Factors ; Gene Expression Regulation
    Chemical Substances Transcription Factors
    Language English
    Publishing date 2023-06-23
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2019364-6
    ISSN 1422-0067 ; 1422-0067 ; 1661-6596
    ISSN (online) 1422-0067
    ISSN 1422-0067 ; 1661-6596
    DOI 10.3390/ijms241310556
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: LDL Cholesterol and Dysglycemia: an Intriguing Physiological Relationship.

    Merino, Jordi / Rotter, Jerome I

    Diabetes

    2020  Volume 69, Issue 10, Page(s) 2058–2060

    MeSH term(s) Biological Specimen Banks ; Blood Glucose ; Cholesterol, LDL ; Diabetes Mellitus, Type 2 ; Humans ; United Kingdom
    Chemical Substances Blood Glucose ; Cholesterol, LDL
    Language English
    Publishing date 2020-07-27
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Comment
    ZDB-ID 80085-5
    ISSN 1939-327X ; 0012-1797
    ISSN (online) 1939-327X
    ISSN 0012-1797
    DOI 10.2337/dbi20-0031
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Genetics Insights in the Relationship Between Type 2 Diabetes and Coronary Heart Disease.

    Goodarzi, Mark O / Rotter, Jerome I

    Circulation research

    2020  Volume 126, Issue 11, Page(s) 1526–1548

    Abstract: Diabetes mellitus is a major risk factor for coronary heart disease (CHD). The major form of diabetes mellitus is type 2 diabetes mellitus (T2D), which is thus largely responsible for the CHD association in the general population. Recent years have seen ... ...

    Abstract Diabetes mellitus is a major risk factor for coronary heart disease (CHD). The major form of diabetes mellitus is type 2 diabetes mellitus (T2D), which is thus largely responsible for the CHD association in the general population. Recent years have seen major advances in the genetics of T2D, principally through ever-increasing large-scale genome-wide association studies. This article addresses the question of whether this expanding knowledge of the genomics of T2D provides insight into the etiologic relationship between T2D and CHD. We will investigate this relationship by reviewing the evidence for shared genetic loci between T2D and CHD; by examining the formal testing of this interaction (Mendelian randomization studies assessing whether T2D is causal for CHD); and then turn to the implications of this genetic relationship for therapies for CHD, for therapies for T2D, and for therapies that affect both. In conclusion, the growing knowledge of the genetic relationship between T2D and CHD is beginning to provide the promise for improved prevention and treatment of both disorders.
    MeSH term(s) Animals ; Coronary Disease/etiology ; Coronary Disease/genetics ; Diabetes Mellitus, Type 2/complications ; Diabetes Mellitus, Type 2/genetics ; Diabetic Cardiomyopathies/etiology ; Diabetic Cardiomyopathies/genetics ; Genetic Heterogeneity ; Genetic Predisposition to Disease ; Humans
    Language English
    Publishing date 2020-05-21
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Review
    ZDB-ID 80100-8
    ISSN 1524-4571 ; 0009-7330 ; 0931-6876
    ISSN (online) 1524-4571
    ISSN 0009-7330 ; 0931-6876
    DOI 10.1161/CIRCRESAHA.119.316065
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: An Outbreak of Polygenic Scores for Coronary Artery Disease.

    Rotter, Jerome I / Lin, Henry J

    Journal of the American College of Cardiology

    2020  Volume 75, Issue 22, Page(s) 2781–2784

    MeSH term(s) Coronary Artery Disease/epidemiology ; Coronary Artery Disease/genetics ; Disease Outbreaks ; Humans ; Multifactorial Inheritance ; Risk Factors
    Keywords covid19
    Language English
    Publishing date 2020-06-05
    Publishing country United States
    Document type Editorial ; Research Support, N.I.H., Extramural ; Comment
    ZDB-ID 605507-2
    ISSN 1558-3597 ; 0735-1097
    ISSN (online) 1558-3597
    ISSN 0735-1097
    DOI 10.1016/j.jacc.2020.04.054
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article: Differences in BMI obesity measures in a workers compensation population: a cross-sectional study.

    Hyman, Mark H / Peled, Tamra J / Hyman, Noah M / Tan, Jingyi / Guo, Xiuqing / Rotter, Jerome I

    Annals of medicine and surgery (2012)

    2023  Volume 85, Issue 5, Page(s) 1607–1613

    Abstract: To assess the accuracy of BMI compared to directly measured dual-energy X-ray absorptiometry percent body fat (DEXA %BF) among a worker compensation population.: Methods: The agreement between BMI and DEXA %BF was assessed by the Pearson correlation ... ...

    Abstract To assess the accuracy of BMI compared to directly measured dual-energy X-ray absorptiometry percent body fat (DEXA %BF) among a worker compensation population.
    Methods: The agreement between BMI and DEXA %BF was assessed by the Pearson correlation coefficient among 1394 evaluable patients over a 5-year period. Sensitivity and specificity were calculated to measure how well BMI can identify true obese and nonobese individuals.
    Results: Using at least 30kg/m
    Conclusions: In a 5-year cohort worker compensation population, BMI was an inaccurate measure of true obesity.
    Language English
    Publishing date 2023-04-01
    Publishing country England
    Document type Journal Article
    ZDB-ID 2745440-X
    ISSN 2049-0801
    ISSN 2049-0801
    DOI 10.1097/MS9.0000000000000428
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Genome-Wide Association Studies.

    Guo, Xiuqing / Rotter, Jerome I

    JAMA

    2019  Volume 322, Issue 17, Page(s) 1705–1706

    MeSH term(s) Genetic Predisposition to Disease ; Genome-Wide Association Study ; Glaucoma, Open-Angle ; Humans ; Polymorphism, Single Nucleotide
    Language English
    Publishing date 2019-11-05
    Publishing country United States
    Document type Journal Article ; Comment
    ZDB-ID 2958-0
    ISSN 1538-3598 ; 0254-9077 ; 0002-9955 ; 0098-7484
    ISSN (online) 1538-3598
    ISSN 0254-9077 ; 0002-9955 ; 0098-7484
    DOI 10.1001/jama.2019.16479
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Most synonymous allelic variants in HIV tat are not silent.

    Giacoletto, Christopher J / Benjamin, Ronald / Deng, Hong-Wen / Rotter, Jerome I / Schiller, Martin R

    Genomics

    2023  Volume 115, Issue 3, Page(s) 110603

    Abstract: The genetic code has degenerate codons that produce no change in the translated protein sequence and are generally thought to be silent. However, some synonymous variants are clearly not silent. Herein, we questioned the frequency of non-silent ... ...

    Abstract The genetic code has degenerate codons that produce no change in the translated protein sequence and are generally thought to be silent. However, some synonymous variants are clearly not silent. Herein, we questioned the frequency of non-silent synonymous variants. We tested how random synonymous variants in the HIV Tat transcription factor effect transcription of an LTR-GFP reporter. Our model system has the advantage of directly measuring the function of the gene in human cells. Approximately, 67% of synonymous variants in Tat were non-silent, either having reduced activity or were full loss-of-function alleles. Eight mutant codons had higher codon usage than wild type, accompanied by reduced transcriptional activity. These were clustered on a loop in the Tat structure. We conclude that most synonymous Tat variants are not silent in human cells, and 25% are associated with changes in codon usage, likely effecting protein folding.
    MeSH term(s) Humans ; Alleles ; Codon ; Codon Usage ; Silent Mutation ; HIV Infections/genetics
    Chemical Substances Codon
    Language English
    Publishing date 2023-03-07
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 356334-0
    ISSN 1089-8646 ; 0888-7543
    ISSN (online) 1089-8646
    ISSN 0888-7543
    DOI 10.1016/j.ygeno.2023.110603
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Transcriptome-wide association study of the plasma proteome reveals cis and trans regulatory mechanisms underlying complex traits.

    Wittich, Henry / Ardlie, Kristin / Taylor, Kent D / Durda, Peter / Liu, Yongmei / Mikhaylova, Anna / Gignoux, Chris R / Cho, Michael H / Rich, Stephen S / Rotter, Jerome I / Manichaikul, Ani / Im, Hae Kyung / Wheeler, Heather E

    American journal of human genetics

    2024  Volume 111, Issue 3, Page(s) 445–455

    Abstract: Regulation of transcription and translation are mechanisms through which genetic variants affect complex traits. Expression quantitative trait locus (eQTL) studies have been more successful at identifying cis-eQTL (within 1 Mb of the transcription start ... ...

    Abstract Regulation of transcription and translation are mechanisms through which genetic variants affect complex traits. Expression quantitative trait locus (eQTL) studies have been more successful at identifying cis-eQTL (within 1 Mb of the transcription start site) than trans-eQTL. Here, we tested the cis component of gene expression for association with observed plasma protein levels to identify cis- and trans-acting genes that regulate protein levels. We used transcriptome prediction models from 49 Genotype-Tissue Expression (GTEx) Project tissues to predict the cis component of gene expression and tested the predicted expression of every gene in every tissue for association with the observed abundance of 3,622 plasma proteins measured in 3,301 individuals from the INTERVAL study. We tested significant results for replication in 971 individuals from the Trans-omics for Precision Medicine (TOPMed) Multi-Ethnic Study of Atherosclerosis (MESA). We found 1,168 and 1,210 cis- and trans-acting associations that replicated in TOPMed (FDR < 0.05) with a median expected true positive rate (π
    MeSH term(s) Humans ; Transcriptome/genetics ; Proteome/genetics ; Multifactorial Inheritance ; Quantitative Trait Loci/genetics ; Genome-Wide Association Study ; Polymorphism, Single Nucleotide/genetics
    Chemical Substances Proteome
    Language English
    Publishing date 2024-02-05
    Publishing country United States
    Document type Journal Article
    ZDB-ID 219384-x
    ISSN 1537-6605 ; 0002-9297
    ISSN (online) 1537-6605
    ISSN 0002-9297
    DOI 10.1016/j.ajhg.2024.01.006
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Sex Differences in the Association of Multiethnic Genome-Wide Blood Pressure Polygenic Risk Score With Population-Level Systolic Blood Pressure Trajectories.

    Shetty, Naman S / Pampana, Akhil / Patel, Nirav / Yerabolu, Krishin / Patel, Gnyata / Irvin, Marguerite R / Natarajan, Pradeep / Lin, Henry J / Guo, Xiuqing / Rich, Stephen S / Rotter, Jerome I / Li, Peng / Arora, Garima / Arora, Pankaj

    Circulation. Genomic and precision medicine

    2024  Volume 17, Issue 2, Page(s) e004515

    MeSH term(s) Humans ; Male ; Female ; Blood Pressure/genetics ; Genetic Risk Score ; Sex Characteristics ; Hypertension/genetics ; Risk Factors
    Language English
    Publishing date 2024-02-19
    Publishing country United States
    Document type Letter
    ISSN 2574-8300
    ISSN (online) 2574-8300
    DOI 10.1161/CIRCGEN.123.004515
    Database MEDical Literature Analysis and Retrieval System OnLINE

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