LIVIVO - The Search Portal for Life Sciences

zur deutschen Oberfläche wechseln
Advanced search

Search results

Result 1 - 10 of total 55

Search options

  1. Article: Editorial: Plant growth-promoting bacteria as a key tool for future agriculture: Agronomic, molecular and omics approaches.

    Rincón-Molina, Clara Ivette / Ruíz-Valdiviezo, Víctor Manuel / Rincón-Rosales, Reiner / Flores Félix, José David

    Frontiers in microbiology

    2023  Volume 14, Page(s) 1168891

    Language English
    Publishing date 2023-03-17
    Publishing country Switzerland
    Document type Editorial
    ZDB-ID 2587354-4
    ISSN 1664-302X
    ISSN 1664-302X
    DOI 10.3389/fmicb.2023.1168891
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  2. Article ; Online: Changes in the abundance and diversity of bacterial and archaeal communities at different depths in a eutrophic freshwater lake in southwestern Mexico.

    Alegría-Gómez, Josué / Castañón-González, José Humberto / Hernández-García, Juan Alfredo / González-Terreros, Elizabeth / Velázquez-Ríos, Irving Oswaldo / Ruíz-Valdiviezo, Víctor Manuel

    Environmental science and pollution research international

    2023  Volume 30, Issue 43, Page(s) 98362–98376

    Abstract: Bacteria and archaea play a fundamental role in the biogeochemical cycles of organic matter, pollutants, and nutrients to maintain the trophic state of aquatic ecosystems. However, very little is known about the composition patterns of microbial ... ...

    Abstract Bacteria and archaea play a fundamental role in the biogeochemical cycles of organic matter, pollutants, and nutrients to maintain the trophic state of aquatic ecosystems. However, very little is known about the composition patterns of microbial communities in vertical distribution (water column) in freshwater lakes and their relationship with the physicochemical properties of water. "La Encantada" lake in the Lagunas de Montebello National Park (LMNP) is a site of interest due to the anthropogenic impact received and the little information about it. In this study, 3 sites were evaluated; samples were collected using 0-15 m deep water columns and analyzed using Illumina MiSeq sequencing technology based on the 16S rRNA gene. The physical parameters of pH, temperature, dissolved oxygen, electrolytic conductivity, and PO
    MeSH term(s) Archaea/genetics ; Lakes ; Chlorobi ; Ecosystem ; Mexico ; RNA, Ribosomal, 16S ; Bacteria/genetics ; Water
    Chemical Substances RNA, Ribosomal, 16S ; Water (059QF0KO0R)
    Language English
    Publishing date 2023-08-22
    Publishing country Germany
    Document type Journal Article
    ZDB-ID 1178791-0
    ISSN 1614-7499 ; 0944-1344
    ISSN (online) 1614-7499
    ISSN 0944-1344
    DOI 10.1007/s11356-023-29380-1
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  3. Article ; Online: Isolation and Identification of Arsenic-Resistant Extremophilic Bacteria from the Crater-Lake Volcano "El Chichon", Mexico.

    Ovando-Ovando, Cesar Ivan / Feregrino-Mondragón, R Daniela / Rincón-Rosales, Reiner / Jasso-Chávez, Ricardo / Ruíz-Valdiviezo, Víctor Manuel

    Current microbiology

    2023  Volume 80, Issue 8, Page(s) 257

    Abstract: The crater lake at "El Chichón" volcano is an extreme acid-thermal environment with high concentrations of heavy metals. In this study, two bacterial strains with the ability to resist high concentrations of arsenic (As) were isolated from water samples ... ...

    Abstract The crater lake at "El Chichón" volcano is an extreme acid-thermal environment with high concentrations of heavy metals. In this study, two bacterial strains with the ability to resist high concentrations of arsenic (As) were isolated from water samples from the crater lake. Staphylococcus ARSC1-P and Stenotrophomonas ARSC2-V isolates were identified by use of the 16S rDNA gene. Staphylococcus ARSC1-P was able to grow in 400 mM of arsenate [As(V)] under oxic and anoxic conditions. The IC
    MeSH term(s) Arsenic ; Mexico ; Extremophiles ; Lakes ; Bacteria ; RNA, Ribosomal, 16S/genetics
    Chemical Substances Arsenic (N712M78A8G) ; RNA, Ribosomal, 16S
    Language English
    Publishing date 2023-06-26
    Publishing country United States
    Document type Journal Article
    ZDB-ID 134238-1
    ISSN 1432-0991 ; 0343-8651
    ISSN (online) 1432-0991
    ISSN 0343-8651
    DOI 10.1007/s00284-023-03327-8
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  4. Article ; Online: Toxicological and Sedative Effects of Chipilin (

    Hernández-Reyes, Adaía / Guzmán-Albores, Jorge Martín / De León-Rodríguez, Antonio / Ruíz-Valdiviezo, Víctor Manuel / Rodríguez-Ortiz, Luis Roberto / Barba-de la Rosa, Ana Paulina

    ACS omega

    2024  Volume 9, Issue 17, Page(s) 18862–18871

    Abstract: Chipilin ( ...

    Abstract Chipilin (
    Language English
    Publishing date 2024-04-10
    Publishing country United States
    Document type Journal Article
    ISSN 2470-1343
    ISSN (online) 2470-1343
    DOI 10.1021/acsomega.3c08290
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  5. Article ; Online: Analysis of phenotypic changes in high temperature and low pH extreme conditions of Alicyclobacillus sendaiensis PA2 related with the cell wall and sporulation genes.

    Ortiz-Cortés, Lourdes Yaret / Aréchiga-Carvajal, Elva Teresa / Ventura-Canseco, Lucía María Cristina / Ruíz-Valdiviezo, Victor Manuel / Gutiérrez-Miceli, Federico Antonio / Alvarez-Gutiérrez, Peggy Elizabeth

    Archives of microbiology

    2024  Volume 206, Issue 1, Page(s) 53

    Abstract: The A. sendaiensis PA2 is a polyextremophile bacterium. In this study, we analyze the A. sendaiensis PA2 genome. The genome was assembled and annotated. The A. sendaiensis PA2 genome structure consists of a 2,956,928 bp long chromosome and 62.77% of G + ... ...

    Abstract The A. sendaiensis PA2 is a polyextremophile bacterium. In this study, we analyze the A. sendaiensis PA2 genome. The genome was assembled and annotated. The A. sendaiensis PA2 genome structure consists of a 2,956,928 bp long chromosome and 62.77% of G + C content. 3056 CDSs were predicted, and 2921 genes were assigned to a putative function. The ANIm and ANIb value resulted in 97.17% and 96.65%, the DDH value was 75.5%, and the value of TETRA (Z-score) was 0.98. Comparative genomic analyses indicated that three systems are enriched in A. sendaiensis PA2. This strain has phenotypic changes in cell wall during batch culture at 65 °C, pH 5.0 and without carbon and nitrogen source. The presence of unique genes of cell wall and sporulation subsystem could be related to the adaptation of A. sendaiensis PA2 to hostile conditions.
    MeSH term(s) Temperature ; Alicyclobacillus ; Cell Wall/genetics ; Hydrogen-Ion Concentration
    Language English
    Publishing date 2024-01-05
    Publishing country Germany
    Document type Journal Article
    ZDB-ID 124824-8
    ISSN 1432-072X ; 0302-8933
    ISSN (online) 1432-072X
    ISSN 0302-8933
    DOI 10.1007/s00203-023-03735-1
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  6. Article ; Online: Microbial community structure, physicochemical characteristics and predictive functionalities of the Mexican tepache fermented beverage.

    Gutiérrez-Sarmiento, Wilbert / Peña-Ocaña, Betsy Anaid / Lam-Gutiérrez, Anayancy / Guzmán-Albores, Jorge Martín / Jasso-Chávez, Ricardo / Ruíz-Valdiviezo, Víctor Manuel

    Microbiological research

    2022  Volume 260, Page(s) 127045

    Abstract: Tepache is a native beverage from Mexico, which is usually elaborated with pineapple shells, brown cane sugar and is fermented naturally. Beneficial health effects have been attributed to its consumption; however, the total ecosystem of this beverage ... ...

    Abstract Tepache is a native beverage from Mexico, which is usually elaborated with pineapple shells, brown cane sugar and is fermented naturally. Beneficial health effects have been attributed to its consumption; however, the total ecosystem of this beverage including chemicals (substrates for microbial growth, prebiotics, etc) and microbiota (probiotics), and potential functionality had not been studied. In this work, the analysis of the tepache beverage for its physicochemical characteristics, as well as its structure of microbial communities and the predictive metabolic functionalities was carried out. Chemical characterization was performed via enzymatic and GC-MS methods. The bacterial and fungal communities were identified by using 16S rRNA and ITS metabarcoding through Illumina MiSeq 2 × 300. The metabolic potential was predicted by in silico tools. This research showed that after 72 h of fermentation, the tepache physicochemical characteristics shifted to 9.5 Brix degrees and acidic pH. The content of ethanol, acetic and L-lactic acid increased significantly from 0.83 ± 0.02 to 3.39 ± 0.18 g/L, from 0.38 ± 0.04 to 0.54 ± 0.04 g/L and from 1.42 ± 0.75 to 8.77 ± 0.34 g/L, respectively. While, the total sugars was decreased from 123.43 ± 2.01 to 84.70 ± 2.34 g/L. The microbial diversity analysis showed a higher richness of bacterial communities and increased fungal evenness at the end of fermentation. At 72 h of fermentation the microbial community was dominated by Lactobacillus, Leuconostoc, Acetobacter and Lactococcus bacterial genera. As for the fungal community, Saccharomyces, Gibberella, Zygosaccharomyces, Candida, Meyerozyma, Talaromyces, Epicoccum and Kabatiella were found to be in most abundance. The predicted functionality profile evidenced a close-fitting relationship between fungal communities at 0 h with the bacterial communities at 72 h of fermentation. The metabolic potential showed that glycolysis and citrate cycle metabolism were predominant for fungal community, while glycolysis, fructose and tricarboxylic acid metabolism were more representative for the bacterial core. Tepache fermentation mainly occurred at two temporal successions. First, a lactic acid and ethanol fermentation dominated by lactic acid bacteria and yeast, and then an increase in acetogenic bacteria. This study revealed for the first time the physicochemical, microbiological changes and predictive functionality that are involved during tepache fermentation. These findings contributed to the knowledge of important microbial sources and could be essential to future efforts in manufacturing process. In addition, this work could help to analyze the health benefits that are empirically attributed to it by consumers.
    MeSH term(s) Bacteria ; Beverages/microbiology ; Ethanol/metabolism ; Fermentation ; Fermented Beverages ; Mexico ; Microbiota ; RNA, Ribosomal, 16S/genetics
    Chemical Substances RNA, Ribosomal, 16S ; Ethanol (3K9958V90M)
    Language English
    Publishing date 2022-04-22
    Publishing country Germany
    Document type Journal Article
    ZDB-ID 1189614-0
    ISSN 1618-0623 ; 0944-5013
    ISSN (online) 1618-0623
    ISSN 0944-5013
    DOI 10.1016/j.micres.2022.127045
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  7. Article ; Online: Prokaryotic diversity across a pH gradient in the "El Chichón" crater-lake: a naturally thermo-acidic environment.

    Velázquez-Ríos, Irving Oswaldo / Rincón-Rosales, Reiner / Gutiérrez-Miceli, Federico Antonio / Alcántara-Hernández, Rocio J / Ruíz-Valdiviezo, Víctor Manuel

    Extremophiles : life under extreme conditions

    2022  Volume 26, Issue 1, Page(s) 8

    Abstract: The "El Chichón" crater-lake in Mexico is a thermo-acidic environment whose microorganisms have been scarcely studied. In this study, we surveyed the prokaryotic communities by amplicon sequencing of the 16S rRNA gene considering samples of sediment and ... ...

    Abstract The "El Chichón" crater-lake in Mexico is a thermo-acidic environment whose microorganisms have been scarcely studied. In this study, we surveyed the prokaryotic communities by amplicon sequencing of the 16S rRNA gene considering samples of sediment and water collected within a pH/temperature gradient (pH 1.9-5.1, 38-89 °C). Further, we interpreted these results within a physicochemical context. The composition of the microbial assemblage differed significantly between the sediments and water. Sediment communities were different in the site with the highest temperature and lower pH value compared to the other ones sampled, while those in the water were relatively similar at all points. Most of the genera found were related to Alicyclobacillus, Acinetobacter, Bacillus, Mesoaciditoga, Methanothermobacter, Desulfitobacterium, Therminicanus, Kyrpidia, Paenibacillus, Thermoanaerobacterium, and Gelria. Some of these genera are known by their thermo-acidic tolerant capacities with flexible metabolisms to use diverse electron donor/acceptors (S or Fe), while others are thermo(acid)philes that mainly occur in the most extreme sites of the lake. These results show the presence of a microbial community adapted to the changing conditions of a very dynamic crater-lake, that include chemoorganotrophs and chemolithotrophs.
    MeSH term(s) Geologic Sediments ; Lakes ; Phylogeny ; Proton-Motive Force ; RNA, Ribosomal, 16S/genetics
    Chemical Substances RNA, Ribosomal, 16S
    Language English
    Publishing date 2022-01-20
    Publishing country Germany
    Document type Journal Article
    ZDB-ID 1481278-2
    ISSN 1433-4909 ; 1431-0651
    ISSN (online) 1433-4909
    ISSN 1431-0651
    DOI 10.1007/s00792-022-01257-0
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  8. Article: Microbial community structure, physicochemical characteristics and predictive functionalities of the Mexican tepache fermented beverage

    Gutiérrez-Sarmiento, Wilbert / Peña-Ocaña, Betsy Anaid / Lam-Gutiérrez, Anayanci / Guzmán-Albores, Jorge Martín / Jasso-Chávez, Ricardo / Ruíz-Valdiviezo, Víctor Manuel

    Microbiological research. 2022 Apr. 17,

    2022  

    Abstract: Tepache is a native beverage from Mexico, which is usually elaborated with pineapple shells, brown cane sugar and is fermented naturally. Beneficial health effects have been attributed to its consumption; however, the total ecosystem of this beverage ... ...

    Abstract Tepache is a native beverage from Mexico, which is usually elaborated with pineapple shells, brown cane sugar and is fermented naturally. Beneficial health effects have been attributed to its consumption; however, the total ecosystem of this beverage including chemicals (substrates for microbial growth, prebiotics, etc) and microbiota (probiotics), and potential functionality had not been studied. In this work, the analysis of the tepache beverage for its physicochemical characteristics, as well as its structure of microbial communities and the predictive metabolic functionalities was carried out. Chemical characterization was performed via enzymatic and GC-MS methods. The bacterial and fungal communities were identified by using 16S rRNA and ITS metabarcoding through Illumina MiSeq 2×300. The metabolic potential was predicted by in silico tools. This research showed that after 72h of fermentation, the tepache physicochemical characteristics shifted to 9.5 Brix degrees and acidic pH. The content of ethanol, acetic and L-lactic acid increased significantly from 0.83 ± 0.02 to 3.39 ± 0.18g/L, from 0.38 ± 0.04 to 0.54 ± 0.04g/L and from 1.42 ± 0.75 to 8.77 ± 0.34g/L, respectively. While, the total sugars was decreased from 123.43 ± 2.01 to 84.70 ± 2.34g/L. The microbial diversity analysis showed a higher richness of bacterial communities and increased fungal evenness at the end of fermentation. At 72h of fermentation the microbial community was dominated by Lactobacillus, Leuconostoc, Acetobacter and Lactococcus bacterial genera. As for the fungal community, Saccharomyces, Gibberella, Zygosaccharomyces, Candida, Meyerozyma, Talaromyces, Epicoccum and Kabatiella were found to be in most abundance. The predicted functionality profile evidenced a close-fitting relationship between fungal communities at 0h with the bacterial communities at 72h of fermentation. The metabolic potential showed that glycolysis and citrate cycle metabolism were predominant for fungal community, while glycolysis, fructose and tricarboxylic acid metabolism were more representative for the bacterial core. Tepache fermentation mainly occurred at two temporal successions. First, a lactic acid and ethanol fermentation dominated by lactic acid bacteria and yeast, and then an increase in acetogenic bacteria. This study revealed for the first time the physicochemical, microbiological changes and predictive functionality that are involved during tepache fermentation. These findings contributed to the knowledge of important microbial sources and could be essential to future efforts in manufacturing process. In addition, this work could help to analyze the health benefits that are empirically attributed to it by consumers.
    Keywords Acetobacter ; Candida ; DNA barcoding ; Epicoccum ; Fusarium ; Kabatiella ; Lactobacillus ; Lactococcus ; Leuconostoc ; Meyerozyma ; Saccharomyces ; Talaromyces ; Zygosaccharomyces ; acetogens ; brix ; cane sugar ; community structure ; computer simulation ; ecosystems ; ethanol ; ethanol fermentation ; fermented beverages ; fructose ; fungal communities ; glycolysis ; lactic acid ; microbial growth ; pH ; pineapples ; prebiotics ; probiotics ; research ; tricarboxylic acid cycle ; yeasts ; Mexico
    Language English
    Dates of publication 2022-0417
    Publishing place Elsevier GmbH
    Document type Article
    Note Pre-press version
    ZDB-ID 1189614-0
    ISSN 1618-0623 ; 0944-5013
    ISSN (online) 1618-0623
    ISSN 0944-5013
    DOI 10.1016/j.micres.2022.127045
    Database NAL-Catalogue (AGRICOLA)

    More links

    Kategorien

  9. Article ; Online: Complete genome sequence of

    Martínez-López, Nancy Abril / Peña-Ocaña, Betsy Anaid / García-Contreras, Rodolfo / Maeda, Toshinari / Rincón-Rosales, Reiner / Cazares, Adrián / Hoshiko, Yuki / Ruíz-Valdiviezo, Víctor Manuel

    Microbiology resource announcements

    2023  Volume 12, Issue 11, Page(s) e0058323

    Abstract: We report the complete genome ... ...

    Abstract We report the complete genome of
    Language English
    Publishing date 2023-10-26
    Publishing country United States
    Document type Journal Article
    ISSN 2576-098X
    ISSN (online) 2576-098X
    DOI 10.1128/MRA.00583-23
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  10. Article: Enhance of tomato production and induction of changes on the organic profile mediated by

    Gen-Jiménez, Adriana / Flores-Félix, José David / Rincón-Molina, Clara Ivette / Manzano-Gomez, Luis Alberto / Rogel, Marco Antonio / Ruíz-Valdiviezo, Víctor Manuel / Rincón-Molina, Francisco Alexander / Rincón-Rosales, Reiner

    Frontiers in microbiology

    2023  Volume 14, Page(s) 1235930

    Abstract: Introduction: The extensive use of chemical fertilizers has served as a response to the increasing need for crop production in recent decades. While it addresses the demand for food, it has resulted in a decline in crop productivity and a heightened ... ...

    Abstract Introduction: The extensive use of chemical fertilizers has served as a response to the increasing need for crop production in recent decades. While it addresses the demand for food, it has resulted in a decline in crop productivity and a heightened negative environmental impact. In contrast, plant probiotic bacteria (PPB) offer a promising alternative to mitigate the negative consequences of chemical fertilizers. PPB can enhance nutrient availability, promote plant growth, and improve nutrient uptake efficiency, thereby reducing the reliance on chemical fertilizers.
    Methods: This study aimed to evaluate the impact of native
    Results: The results showed that the rhizobial strains LBP2-1, NSJP1-1 and SJP1-2 had the ability to solubilize dicalcium phosphate, produce siderophores, synthesize indole acetic acid, cellulose production, biofilm production, and root colonization. Inoculation of tomato plants with native
    Discussion: Our findings demonstrate the potential that native
    Language English
    Publishing date 2023-08-02
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2587354-4
    ISSN 1664-302X
    ISSN 1664-302X
    DOI 10.3389/fmicb.2023.1235930
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

To top