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  1. Article: Theoretical Study of the Impact of Vacancies and Disorder on the Electronic Properties of Cu₂–ₓSe

    Klan, Jonathan M / Harper, Daniel K / Ruffley, Jonathan P / Gan, Xing Yee / Millstone, Jill E / Johnson, J. Karl

    Journal of physical chemistry. 2021 May 27, v. 125, no. 22

    2021  

    Abstract: Copper selenide (Cu₂–ₓSe) is a promising material for plasmonic nanoparticle applications. Cu₂–ₓSe becomes plasmonically active in the oxidized state (x > 0), where free carrier density increases with increasing oxidation. It also has considerable cation ...

    Abstract Copper selenide (Cu₂–ₓSe) is a promising material for plasmonic nanoparticle applications. Cu₂–ₓSe becomes plasmonically active in the oxidized state (x > 0), where free carrier density increases with increasing oxidation. It also has considerable cation (Cu) disorder. To date, there has not been a theoretical study of the impact of the degree of oxidation and cation disorder on the electronic and optical properties of Cu₂–ₓSe. We used density functional theory (DFT) to investigate the effects of the concentration of Cu vacancies and disorder on the properties of Cu₂–ₓSe. We used both generalized gradient approximation (GGA) and hybrid-GGA functionals to compute the structural, electronic, and optical properties of the cubic phase of Cu₂–ₓSe for x = 0, 0.25, 0.5, and 0.75. We performed ab initio molecular dynamics simulations at 300 K to simulate disorder, taking snapshots sampled from simulations of periodic supercells with different levels and arrangements of defects. The HSE06+U hybrid-GGA functional was used to calculate the electronic properties, including the optical band gaps, for a total of 400 different configurations. We found that the average optical band gap increases with increasing oxidation. We also found that only the stoichiometric, x = 0, materials are semiconductors, and the electronic band gap generally increases, increasing disorder.
    Keywords cations ; density functional theory ; molecular dynamics ; oxidation ; selenides ; stoichiometry
    Language English
    Dates of publication 2021-0527
    Size p. 12324-12332.
    Publishing place American Chemical Society
    Document type Article
    Note NAL-AP-2-clean
    ISSN 1932-7455
    DOI 10.1021/acs.jpcc.1c02147
    Database NAL-Catalogue (AGRICOLA)

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  2. Article: Design, Synthesis, and Characterization of Metal–Organic Frameworks for Enhanced Sorption of Chemical Warfare Agent Simulants

    Ruffley, Jonathan P / Borguet, Eric / Goodenough, Isabella / Johnson, J. Karl / Luo, Tian-Yi / Richard, Melissandre / Rosi, Nathaniel L

    Journal of physical chemistry. 2019 July 22, v. 123, no. 32

    2019  

    Abstract: Metal–organic frameworks (MOFs) and specifically the UiO family of MOFs have been extensively studied for the adsorption and degradation of chemical warfare agents (CWAs) and their simulants. We present a combined experimental and computational study of ... ...

    Abstract Metal–organic frameworks (MOFs) and specifically the UiO family of MOFs have been extensively studied for the adsorption and degradation of chemical warfare agents (CWAs) and their simulants. We present a combined experimental and computational study of the adsorption of dimethyl methylphosphonate (DMMP), a CWA adsorption simulant, in functionalized UiO-67. We have used density functional theory (DFT) to design functionalized MOFs having a range of binding energies for DMMP. We have selected three different functionalized MOFs for experimental synthesis and characterization from a total of eight studied with DFT. These three MOFs were identified as having the weakest, intermediate, and strongest binding energies for DMMP of the set, as predicted by our DFT calculations. We find that the order of predicted binding energies agrees with data from temperature-programmed desorption experiments. Moreover, the values of the binding energies are also in good agreement. This serves as a proof of concept that ab initio calculations can guide experiments in designing MOFs that exhibit a higher affinity for CWAs and their simulants. One surprising outcome of this work is that reactions between DMMP and the three functionalized UiO-67 MOFs were not observed under ultrahigh-vacuum conditions for the exposure of DMMP of up to 9000 L. This lack of reactivity is attributed to the low levels of defects in the materials used.
    Keywords adsorption ; coordination polymers ; density functional theory ; desorption ; phosphonates
    Language English
    Dates of publication 2019-0722
    Size p. 19748-19758.
    Publishing place American Chemical Society
    Document type Article
    ISSN 1932-7455
    DOI 10.1021/acs.jpcc.9b05574
    Database NAL-Catalogue (AGRICOLA)

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  3. Article ; Online: Identifying UiO-67 Metal-Organic Framework Defects and Binding Sites through Ammonia Adsorption.

    Swaroopa Datta Devulapalli, Venkata / McDonnell, Ryan P / Ruffley, Jonathan P / Shukla, Priyanka B / Luo, Tian-Yi / De Souza, Mattheus L / Das, Prasenjit / Rosi, Nathaniel L / Karl Johnson, J / Borguet, Eric

    ChemSusChem

    2021  Volume 15, Issue 1, Page(s) e202102217

    Abstract: Ammonia is a widely used toxic industrial chemical that can cause severe respiratory ailments. Therefore, understanding and developing materials for its efficient capture and controlled release is necessary. One such class of materials is 3D porous metal- ...

    Abstract Ammonia is a widely used toxic industrial chemical that can cause severe respiratory ailments. Therefore, understanding and developing materials for its efficient capture and controlled release is necessary. One such class of materials is 3D porous metal-organic frameworks (MOFs) with exceptional surface areas and robust structures, ideal for gas storage/transport applications. Herein, interactions between ammonia and UiO-67-X (X: H, NH
    MeSH term(s) Adsorption ; Ammonia ; Binding Sites ; Metal-Organic Frameworks
    Chemical Substances Metal-Organic Frameworks ; UiO-67 ; Ammonia (7664-41-7)
    Language English
    Publishing date 2021-12-02
    Publishing country Germany
    Document type Journal Article
    ISSN 1864-564X
    ISSN (online) 1864-564X
    DOI 10.1002/cssc.202102217
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Designing Open Metal Sites in Metal–Organic Frameworks for Paraffin/Olefin Separations

    Mohamed, Mona H / Yang, Yahui / Li, Lin / Zhang, Sen / Ruffley, Jonathan P / Jarvi, Austin Gamble / Saxena, Sunil / Veser, Götz / Johnson, J. Karl / Rosi, Nathaniel L

    Journal of the American Chemical Society. 2019 Aug. 05, v. 141, no. 33

    2019  

    Abstract: Incorporating open metal sites (OMS) into metal–organic frameworks allows design of well-defined binding sites for selective molecular adsorption, which has a profound impact on catalysis and separations. We demonstrate that Cu(I) sites incorporated into ...

    Abstract Incorporating open metal sites (OMS) into metal–organic frameworks allows design of well-defined binding sites for selective molecular adsorption, which has a profound impact on catalysis and separations. We demonstrate that Cu(I) sites incorporated into MFU-4l preferentially adsorb olefins over paraffins. Density functional theory (DFT) calculations show that the OMS are independent, with no dependence of binding energy on olefin loading up to one olefin per Cu(I). Experimentally, increasing Cu(I) loading increased olefin uptake without affecting the binding energy, as predicted by DFT and confirmed by temperature-programmed desorption. The potential of this material for olefin/paraffin separation under ambient conditions was investigated by gas adsorption and column breakthrough experiments for an equimolar ratio of olefin/paraffin. High-grade propylene and ethylene (>99.999%) can be generated using temperature–concentration swing recycling from a Cu(I)-MFU-4l packed column with no measurable paraffin breakthrough.
    Keywords adsorption ; alkanes ; binding sites ; catalytic activity ; coordination polymers ; copper ; density functional theory ; desorption ; energy ; ethylene ; olefin ; propylene ; recycling
    Language English
    Dates of publication 2019-0805
    Size p. 13003-13007.
    Publishing place American Chemical Society
    Document type Article
    ZDB-ID 3155-0
    ISSN 1520-5126 ; 0002-7863
    ISSN (online) 1520-5126
    ISSN 0002-7863
    DOI 10.1021/jacs.9b06582
    Database NAL-Catalogue (AGRICOLA)

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  5. Article ; Online: Designing Open Metal Sites in Metal-Organic Frameworks for Paraffin/Olefin Separations.

    Mohamed, Mona H / Yang, Yahui / Li, Lin / Zhang, Sen / Ruffley, Jonathan P / Jarvi, Austin Gamble / Saxena, Sunil / Veser, Götz / Johnson, J Karl / Rosi, Nathaniel L

    Journal of the American Chemical Society

    2019  Volume 141, Issue 33, Page(s) 13003–13007

    Abstract: Incorporating open metal sites (OMS) into metal-organic frameworks allows design of well-defined binding sites for selective molecular adsorption, which has a profound impact on catalysis and separations. We demonstrate that Cu(I) sites incorporated into ...

    Abstract Incorporating open metal sites (OMS) into metal-organic frameworks allows design of well-defined binding sites for selective molecular adsorption, which has a profound impact on catalysis and separations. We demonstrate that Cu(I) sites incorporated into MFU-4
    Language English
    Publishing date 2019-08-13
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 3155-0
    ISSN 1520-5126 ; 0002-7863
    ISSN (online) 1520-5126
    ISSN 0002-7863
    DOI 10.1021/jacs.9b06582
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: In Situ Nuclear Magnetic Resonance Investigation of Molecular Adsorption and Kinetics in Metal-Organic Framework UiO-66.

    An, Yao / Kleinhammes, Alfred / Doyle, Patrick / Chen, En-Yi / Song, Yan / Morris, Amanda J / Gibbons, Bradley / Cai, Meng / Johnson, J Karl / Shukla, Priyanka B / Vo, Minh Nguyen / Wei, Xin / Wilmer, Christopher E / Ruffley, Jonathan P / Huang, Liangliang / Tovar, Trenton M / Mahle, John J / Karwacki, Christopher J / Wu, Yue

    The journal of physical chemistry letters

    2021  Volume 12, Issue 2, Page(s) 892–899

    Abstract: Thermodynamic and kinetic properties of molecular adsorption and transport in metal-organic frameworks (MOFs) are crucially important for many applications, including gas adsorption, filtration, and remediation of harmful chemicals. Using the in ... ...

    Abstract Thermodynamic and kinetic properties of molecular adsorption and transport in metal-organic frameworks (MOFs) are crucially important for many applications, including gas adsorption, filtration, and remediation of harmful chemicals. Using the in situ
    Language English
    Publishing date 2021-01-12
    Publishing country United States
    Document type Journal Article
    ISSN 1948-7185
    ISSN (online) 1948-7185
    DOI 10.1021/acs.jpclett.0c03504
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article: Modeling of Diffusion of Acetone in UiO-66

    Wardzala, Jacob J / Ruffley, Jonathan P / Goodenough, Isabella / Schmidt, Allie M / Shukla, Priyanka B / Wei, Xin / Bagusetty, Abhishek / De Souza, Mattheus / Das, Prasenjit / Thompson, Dorian J / Karwacki, Christopher J / Wilmer, Christopher E / Borguet, Eric / Rosi, Nathaniel L / Johnson, J. Karl

    Journal of physical chemistry. 2020 Dec. 17, v. 124, no. 52

    2020  

    Abstract: Highly porous zirconium-based metal–organic frameworks (MOFs) have been widely studied as materials for sorption and destruction of chemical warfare agents (CWAs). It is important to understand the diffusion of CWAs, their reaction products, and ... ...

    Abstract Highly porous zirconium-based metal–organic frameworks (MOFs) have been widely studied as materials for sorption and destruction of chemical warfare agents (CWAs). It is important to understand the diffusion of CWAs, their reaction products, and environmental molecules through MOFs to utilize these materials for protection against CWA threats. As a first step toward this goal, we study adsorption and diffusion of acetone in pristine UiO-66. We have chosen to study UiO-66 because it has been demonstrated to be effective for destruction of CWAs and simulants; we use acetone because it is a prototypical polar organic molecule small enough to be expected to diffuse fairly rapidly through nondefective UiO-66. We specifically examine the impact of framework flexibility and hydrogen bonding between acetone and the OH groups on the nodes of the framework on the diffusivity of acetone. We find that inclusion of flexibility is essential for meaningful predictions of diffusion of acetone. We have identified the dynamics of the three linkers making up the triangular window between adjacent pores as the critical factor in controlling diffusion of acetone. We demonstrate from experiments and first-principles calculations that acetone readily hydrogen bonds to UiO-66 framework OH groups. We have modified the classical potential for UiO-66 to accurately model the framework–acetone hydrogen bonds, which are not accounted for in many MOF potentials. We find that hydrogen bonding decreases the diffusivity by about 1 order of magnitude at low loading and about a factor of 3 at high loading. Thus, proper accounting of hydrogen bonding and framework flexibility are both critical for obtaining physically realistic values of diffusivities for acetone and similar-sized polar molecules in UiO-66.
    Keywords acetone ; adsorption ; diffusivity ; hydrogen
    Language English
    Dates of publication 2020-1217
    Size p. 28469-28478.
    Publishing place American Chemical Society
    Document type Article
    Note NAL-AP-2-clean
    ISSN 1932-7455
    DOI 10.1021/acs.jpcc.0c07040
    Database NAL-Catalogue (AGRICOLA)

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