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  1. Article ; Online: Cytotoxic CD4+ T-cells specific for EBV capsid antigen BORF1 are maintained in long-term latently infected healthy donors.

    Dowell, Alexander C / Haigh, Tracey A / Ryan, Gordon B / Turner, James E / Long, Heather M / Taylor, Graham S

    PLoS pathogens

    2021  Volume 17, Issue 12, Page(s) e1010137

    Abstract: Epstein Barr Virus (EBV) infects more than 95% of the population whereupon it establishes a latent infection of B-cells that persists for life under immune control. Primary EBV infection can cause infectious mononucleosis (IM) and long-term viral ... ...

    Abstract Epstein Barr Virus (EBV) infects more than 95% of the population whereupon it establishes a latent infection of B-cells that persists for life under immune control. Primary EBV infection can cause infectious mononucleosis (IM) and long-term viral carriage is associated with several malignancies and certain autoimmune diseases. Current efforts developing EBV prophylactic vaccination have focussed on neutralising antibodies. An alternative strategy, that could enhance the efficacy of such vaccines or be used alone, is to generate T-cell responses capable of recognising and eliminating newly EBV-infected cells before the virus initiates its growth transformation program. T-cell responses against the EBV structural proteins, brought into the newly infected cell by the incoming virion, are prime candidates for such responses. Here we show the structural EBV capsid proteins BcLF1, BDLF1 and BORF1 are frequent targets of T-cell responses in EBV infected people, identify new CD8+ and CD4+ T-cell epitopes and map their HLA restricting alleles. Using T-cell clones we demonstrate that CD4+ but not CD8+ T-cell clones specific for the capsid proteins can recognise newly EBV-infected B-cells and control B-cell outgrowth via cytotoxicity. Using MHC-II tetramers we show a CD4+ T-cell response to an epitope within the BORF1 capsid protein epitope is present during acute EBV infection and in long-term viral carriage. In common with other EBV-specific CD4+ T-cell responses the BORF1-specific CD4+ T-cells in IM patients expressed perforin and granzyme-B. Unexpectedly, perforin and granzyme-B expression was sustained over time even when the donor had entered the long-term infected state. These data further our understanding of EBV structural proteins as targets of T-cell responses and how CD4+ T-cell responses to EBV change from acute disease into convalescence. They also identify new targets for prophylactic EBV vaccine development.
    MeSH term(s) CD4-Positive T-Lymphocytes/immunology ; DNA-Binding Proteins/immunology ; Epstein-Barr Virus Infections/immunology ; Herpesvirus 4, Human/immunology ; Humans ; Latent Infection/immunology ; T-Lymphocytes, Cytotoxic/immunology ; Viral Proteins/immunology ; Virus Latency/immunology
    Chemical Substances BORF1 protein, Epstein-Barr virus ; DNA-Binding Proteins ; Viral Proteins
    Language English
    Publishing date 2021-12-09
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2205412-1
    ISSN 1553-7374 ; 1553-7374
    ISSN (online) 1553-7374
    ISSN 1553-7374
    DOI 10.1371/journal.ppat.1010137
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: The Cellular Localization of Human Cytomegalovirus Glycoprotein Expression Greatly Influences the Frequency and Functional Phenotype of Specific CD4+ T Cell Responses.

    Pachnio, Annette / Zuo, Jianmin / Ryan, Gordon B / Begum, Jusnara / Moss, Paul A H

    Journal of immunology (Baltimore, Md. : 1950)

    2015  Volume 195, Issue 8, Page(s) 3803–3815

    Abstract: CMV infection is a significant cause of morbidity and mortality in immunocompromised individuals, and the development of a vaccine is of high priority. Glycoprotein B (gB) is a leading vaccine candidate but the glycoprotein H (gH) pentameric complex is ... ...

    Abstract CMV infection is a significant cause of morbidity and mortality in immunocompromised individuals, and the development of a vaccine is of high priority. Glycoprotein B (gB) is a leading vaccine candidate but the glycoprotein H (gH) pentameric complex is now recognized as the major target for neutralizing Abs. However, little is known about the T cell immune response against gH and glycoprotein L (gL) and this is likely to be an important attribute for vaccine immunogenicity. In this study, we examine and contrast the magnitude and phenotype of the T cell immune response against gB, gH, and gL within healthy donors. gB-specific CD4(+) T cells were found in 95% of donors, and 29 epitopes were defined with gB-specific response sizes ranging from 0.02 to 2.88% of the CD4(+) T cell pool. In contrast, only 20% of donors exhibited a T cell response against gH or gL. Additionally, gB-specific CD4(+) T cells exhibited a more cytotoxic phenotype, with high levels of granzyme B expression. Glycoproteins were effectively presented following delivery to APCs but only gB-derived epitopes were presented following endogenous synthesis. gB expression was observed exclusively within vesicular structures colocalizing with HLA-DM whereas gH was distributed evenly throughout the cytoplasm. Grafting of the C-terminal domain from gB onto gH could not transfer this pattern of presentation. These results reveal that gB is a uniquely immunogenic CMV glycoprotein and this is likely to reflect its unique pattern of endogenous Ag presentation. Consideration may be required toward mechanisms that boost cellular immunity to gH and gL within future subunit vaccines.
    MeSH term(s) Adult ; CD4-Positive T-Lymphocytes/immunology ; CD4-Positive T-Lymphocytes/pathology ; Cytomegalovirus/genetics ; Cytomegalovirus/immunology ; Cytomegalovirus Infections/genetics ; Cytomegalovirus Infections/immunology ; Cytomegalovirus Infections/pathology ; Cytomegalovirus Vaccines/genetics ; Cytomegalovirus Vaccines/immunology ; Epitopes, T-Lymphocyte/genetics ; Epitopes, T-Lymphocyte/immunology ; Female ; Granzymes ; Humans ; Immunity, Cellular ; Male ; Middle Aged ; Viral Envelope Proteins/genetics ; Viral Envelope Proteins/immunology
    Chemical Substances Cytomegalovirus Vaccines ; Epitopes, T-Lymphocyte ; Viral Envelope Proteins ; GZMB protein, human (EC 3.4.21.-) ; Granzymes (EC 3.4.21.-)
    Language English
    Publishing date 2015-09-11
    Publishing country United States
    Document type Clinical Trial ; Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 3056-9
    ISSN 1550-6606 ; 0022-1767 ; 1048-3233 ; 1047-7381
    ISSN (online) 1550-6606
    ISSN 0022-1767 ; 1048-3233 ; 1047-7381
    DOI 10.4049/jimmunol.1500696
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Non-uniform

    Burns, David M / Ryan, Gordon B / Harvey, Caroline M / Nagy, Eszter / Hughes, Simon / Murray, Paul G / Russell, Nigel H / Fox, Christopher P / Long, Heather M

    Frontiers in immunology

    2019  Volume 10, Page(s) 2489

    Abstract: Epstein-Barr virus (EBV)-associated post-transplant lymphoproliferative disease (PTLD) is a life-threatening complication of T-lymphocyte deplete allogeneic hematopoietic stem cell transplantation (allo-HSCT). For patients with PTLD refractory to ... ...

    Abstract Epstein-Barr virus (EBV)-associated post-transplant lymphoproliferative disease (PTLD) is a life-threatening complication of T-lymphocyte deplete allogeneic hematopoietic stem cell transplantation (allo-HSCT). For patients with PTLD refractory to Rituximab, donor lymphocyte infusion (DLI) is established as a successful option for salvage therapy. However, although
    MeSH term(s) Adoptive Transfer/adverse effects ; Adoptive Transfer/methods ; Disease Susceptibility ; Epitopes, T-Lymphocyte/immunology ; Epstein-Barr Virus Infections/immunology ; Epstein-Barr Virus Infections/virology ; Female ; Hematopoietic Stem Cell Transplantation/adverse effects ; Hematopoietic Stem Cell Transplantation/methods ; Herpesvirus 4, Human/immunology ; Humans ; Immunohistochemistry ; Immunophenotyping ; Lymphocyte Activation/immunology ; Lymphocyte Subsets/immunology ; Lymphocyte Subsets/metabolism ; Lymphoproliferative Disorders/diagnosis ; Lymphoproliferative Disorders/etiology ; Male ; Middle Aged ; Positron-Emission Tomography ; T-Cell Antigen Receptor Specificity/immunology ; T-Lymphocytes/immunology ; T-Lymphocytes/metabolism ; Tissue Donors ; Viral Load
    Chemical Substances Epitopes, T-Lymphocyte
    Language English
    Publishing date 2019-10-29
    Publishing country Switzerland
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2606827-8
    ISSN 1664-3224 ; 1664-3224
    ISSN (online) 1664-3224
    ISSN 1664-3224
    DOI 10.3389/fimmu.2019.02489
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Primary EBV Infection Induces an Acute Wave of Activated Antigen-Specific Cytotoxic CD4

    Meckiff, Benjamin J / Ladell, Kristin / McLaren, James E / Ryan, Gordon B / Leese, Alison M / James, Eddie A / Price, David A / Long, Heather M

    Journal of immunology (Baltimore, Md. : 1950)

    2019  Volume 203, Issue 5, Page(s) 1276–1287

    Abstract: ... ...

    Abstract CD4
    MeSH term(s) B-Lymphocytes/immunology ; CD4 Antigens/immunology ; CD4-Positive T-Lymphocytes/immunology ; Cytotoxicity, Immunologic/immunology ; Epstein-Barr Virus Infections/immunology ; Herpesvirus 4, Human/immunology ; Humans ; Immunologic Memory/immunology ; Infectious Mononucleosis/immunology ; T-Lymphocytes, Cytotoxic/immunology
    Chemical Substances CD4 Antigens
    Language English
    Publishing date 2019-07-15
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 3056-9
    ISSN 1550-6606 ; 0022-1767 ; 1048-3233 ; 1047-7381
    ISSN (online) 1550-6606
    ISSN 0022-1767 ; 1048-3233 ; 1047-7381
    DOI 10.4049/jimmunol.1900377
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: Adenovirus E1A interacts directly with, and regulates the level of expression of, the immunoproteasome component MECL1

    Berhane, Sarah / Aresté, Cristina / Ablack, Jailal N / Ryan, Gordon B / Blackbourn, David J / Mymryk, Joe S / Turnell, Andrew S / Steele, Jane C / Grand, Roger J.A

    Virology. 2011 Dec. 20, v. 421, no. 2

    2011  

    Abstract: Proteasomes represent the major non-lysosomal mechanism responsible for the degradation of proteins. Following interferon γ treatment 3 proteasome subunits are replaced producing immunoproteasomes. Adenovirus E1A interacts with components of the 20S and ... ...

    Abstract Proteasomes represent the major non-lysosomal mechanism responsible for the degradation of proteins. Following interferon γ treatment 3 proteasome subunits are replaced producing immunoproteasomes. Adenovirus E1A interacts with components of the 20S and 26S proteasome and can affect presentation of peptides. In light of these observations we investigated the relationship of AdE1A to the immunoproteasome. AdE1A interacts with the immunoproteasome subunit, MECL1. In contrast, AdE1A binds poorly to the proteasome β2 subunit which is replaced by MECL1 in the conversion of proteasomes to immunoproteasomes. Binding sites on E1A for MECL1 correspond to the N-terminal region and conserved region 3. Furthermore, AdE1A causes down-regulation of MECL1 expression, as well as LMP2 and LMP7, induced by interferon γ treatment during Ad infections or following transient transfection. Consistent with previous reports AdE1A reduced IFNγ-stimulated STAT1 phosphorylation which appeared to be responsible for its ability to reduce expression of immunoproteasome subunits.
    Keywords binding sites ; gene expression regulation ; interferon-gamma ; peptides ; phosphorylation ; proteasome endopeptidase complex ; proteins ; transfection
    Language English
    Dates of publication 2011-1220
    Size p. 149-158.
    Publishing place Elsevier Inc.
    Document type Article
    ZDB-ID 200425-2
    ISSN 1096-0341 ; 0042-6822
    ISSN (online) 1096-0341
    ISSN 0042-6822
    DOI 10.1016/j.virol.2011.09.025
    Database NAL-Catalogue (AGRICOLA)

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  6. Article: The full-length E1E4 protein of human papillomavirus type 18 modulates differentiation-dependent viral DNA amplification and late gene expression.

    Wilson, Regina / Ryan, Gordon B / Knight, Gillian L / Laimins, Laimonis A / Roberts, Sally

    Virology

    2007  Volume 362, Issue 2, Page(s) 453–460

    Abstract: Activation of the productive phase of the human papillomavirus (HPV) life cycle in differentiated keratinocytes is coincident with high-level expression of E1E4 protein. To determine the role of E1E4 in the HPV replication cycle, we constructed HPV18 ... ...

    Abstract Activation of the productive phase of the human papillomavirus (HPV) life cycle in differentiated keratinocytes is coincident with high-level expression of E1E4 protein. To determine the role of E1E4 in the HPV replication cycle, we constructed HPV18 mutant genomes in which expression of the full-length E1E4 protein was abrogated. Undifferentiated keratinocytes containing mutant genomes showed enhanced proliferation when compared to cells containing wildtype genomes, but there were no differences in maintenance of viral episomes. Following differentiation, cells with mutant genomes exhibited reduced levels of viral DNA amplification and late gene expression, compared to wildtype genome-containing cells. This indicates that HPV18 E1E4 plays an important role in regulating HPV late functions, and it may also function in the early phase of the replication cycle. Our finding that full-length HPV18 E1E4 protein plays a significant role in promoting viral genome amplification concurs with a similar report with HPV31, but is in contrast to an HPV11 study where viral DNA amplification was not dependent on full-length E1E4 expression, and to HPV16 where only C-terminal truncations in E1E4 abrogated vegetative genome replication. This suggests that type-specific differences exist between various E1E4 proteins.
    MeSH term(s) Cell Differentiation ; Cells, Cultured ; DNA, Viral/biosynthesis ; Human papillomavirus 18/genetics ; Human papillomavirus 18/physiology ; Humans ; In Situ Hybridization, Fluorescence ; Indoles/metabolism ; Keratinocytes/cytology ; Keratinocytes/virology ; Oncogene Proteins, Viral/genetics ; Oncogene Proteins, Viral/physiology ; Virus Replication/physiology
    Chemical Substances DNA, Viral ; Indoles ; Oncogene Proteins, Viral ; oncogene protein E1, Human papillomavirus type 18 ; oncogene protein E4, Human papillomavirus type 18 ; DAPI (47165-04-8)
    Language English
    Publishing date 2007-06-05
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 200425-2
    ISSN 1096-0341 ; 0042-6822
    ISSN (online) 1096-0341
    ISSN 0042-6822
    DOI 10.1016/j.virol.2007.01.005
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Development and Validation of a Combined Hypoxia and Immune Prognostic Classifier for Head and Neck Cancer.

    Brooks, Jill M / Menezes, Albert N / Ibrahim, Maha / Archer, Lucinda / Lal, Neeraj / Bagnall, Christopher J / von Zeidler, Sandra V / Valentine, Helen R / Spruce, Rachel J / Batis, Nikolaos / Bryant, Jennifer L / Hartley, Margaret / Kaul, Baksho / Ryan, Gordon B / Bao, Riyue / Khattri, Arun / Lee, Steven P / Ogbureke, Kalu U E / Middleton, Gary /
    Tennant, Daniel A / Beggs, Andrew D / Deeks, Jonathan / West, Catharine M L / Cazier, Jean-Baptiste / Willcox, Benjamin E / Seiwert, Tanguy Y / Mehanna, Hisham

    Clinical cancer research : an official journal of the American Association for Cancer Research

    2019  Volume 25, Issue 17, Page(s) 5315–5328

    Abstract: Purpose: Intratumoral hypoxia and immunity have been correlated with patient outcome in various tumor settings. However, these factors are not currently considered for treatment selection in head and neck cancer (HNC) due to lack of validated biomarkers. ...

    Abstract Purpose: Intratumoral hypoxia and immunity have been correlated with patient outcome in various tumor settings. However, these factors are not currently considered for treatment selection in head and neck cancer (HNC) due to lack of validated biomarkers. Here we sought to develop a hypoxia-immune classifier with potential application in patient prognostication and prediction of response to targeted therapy.
    Experimental design: A 54-gene hypoxia-immune signature was constructed on the basis of literature review. Gene expression was analyzed
    Results: Unsupervised hierarchical clustering of TCGA dataset (development cohort) identified three patient subgroups with distinct hypoxia-immune phenotypes and survival profiles: hypoxia
    Conclusions: We developed and validated a hypoxia-immune prognostic transcriptional classifier, which may have clinical application to guide the use of hypoxia modification and targeted immunotherapies for the treatment of HNC.
    MeSH term(s) Adult ; Aged ; Aged, 80 and over ; B7-H1 Antigen/immunology ; B7-H1 Antigen/metabolism ; Biomarkers, Tumor/analysis ; Biomarkers, Tumor/genetics ; Biomarkers, Tumor/immunology ; Cohort Studies ; Female ; Gene Expression Profiling/methods ; Gene Expression Regulation, Neoplastic ; Head and Neck Neoplasms/genetics ; Head and Neck Neoplasms/immunology ; Head and Neck Neoplasms/metabolism ; Head and Neck Neoplasms/pathology ; Humans ; Hypoxia/genetics ; Hypoxia/immunology ; Hypoxia/metabolism ; Hypoxia/pathology ; Lymphocytes, Tumor-Infiltrating/immunology ; Male ; Middle Aged ; Prognosis ; Retrospective Studies ; Survival Rate ; Young Adult
    Chemical Substances B7-H1 Antigen ; Biomarkers, Tumor ; CD274 protein, human
    Language English
    Publishing date 2019-06-10
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S. ; Validation Study
    ZDB-ID 1225457-5
    ISSN 1557-3265 ; 1078-0432
    ISSN (online) 1557-3265
    ISSN 1078-0432
    DOI 10.1158/1078-0432.CCR-18-3314
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: MHC II tetramers visualize human CD4+ T cell responses to Epstein-Barr virus infection and demonstrate atypical kinetics of the nuclear antigen EBNA1 response.

    Long, Heather M / Chagoury, Odette L / Leese, Alison M / Ryan, Gordon B / James, Eddie / Morton, Laura T / Abbott, Rachel J M / Sabbah, Shereen / Kwok, William / Rickinson, Alan B

    The Journal of experimental medicine

    2013  Volume 210, Issue 5, Page(s) 933–949

    Abstract: Virus-specific CD4(+) T cells are key orchestrators of host responses to viral infection yet, compared with their CD8(+) T cell counterparts, remain poorly characterized at the single cell level. Here we use nine MHC II-epitope peptide tetramers to ... ...

    Abstract Virus-specific CD4(+) T cells are key orchestrators of host responses to viral infection yet, compared with their CD8(+) T cell counterparts, remain poorly characterized at the single cell level. Here we use nine MHC II-epitope peptide tetramers to visualize human CD4(+) T cell responses to Epstein-Barr virus (EBV), the causative agent of infectious mononucleosis (IM), a disease associated with large virus-specific CD8(+) T cell responses. We find that, while not approaching virus-specific CD8(+) T cell expansions in magnitude, activated CD4(+) T cells specific for epitopes in the latent antigen EBNA2 and four lytic cycle antigens are detected at high frequencies in acute IM blood. They then fall rapidly to values typical of life-long virus carriage where most tetramer-positive cells display conventional memory markers but some, unexpectedly, revert to a naive-like phenotype. In contrast CD4(+) T cell responses to EBNA1 epitopes are greatly delayed in IM patients, in line with the well-known but hitherto unexplained delay in EBNA1 IgG antibody responses. We present evidence from an in vitro system that may explain these unusual kinetics. Unlike other EBNAs and lytic cycle proteins, EBNA1 is not naturally released from EBV-infected cells as a source of antigen for CD4(+) T cell priming.
    MeSH term(s) Acute Disease ; Antibody Formation/immunology ; Antigens, Viral/immunology ; CD4-Positive T-Lymphocytes/immunology ; Cell Proliferation ; Convalescence ; Epitopes/immunology ; Epstein-Barr Virus Infections/immunology ; Epstein-Barr Virus Nuclear Antigens/immunology ; Herpesvirus 4, Human/immunology ; Histocompatibility Antigens Class II/immunology ; Humans ; Immunoglobulin G/immunology ; Immunologic Memory ; Infectious Mononucleosis/immunology ; Infectious Mononucleosis/pathology ; Kinetics ; Phenotype ; Protein Multimerization ; Species Specificity
    Chemical Substances Antigens, Viral ; Epitopes ; Epstein-Barr Virus Nuclear Antigens ; Histocompatibility Antigens Class II ; Immunoglobulin G ; EBV-encoded nuclear antigen 1 (O5GA75RST7)
    Language English
    Publishing date 2013-04-08
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 218343-2
    ISSN 1540-9538 ; 0022-1007
    ISSN (online) 1540-9538
    ISSN 0022-1007
    DOI 10.1084/jem.20121437
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Adenovirus E1A interacts directly with, and regulates the level of expression of, the immunoproteasome component MECL1.

    Berhane, Sarah / Aresté, Cristina / Ablack, Jailal N / Ryan, Gordon B / Blackbourn, David J / Mymryk, Joe S / Turnell, Andrew S / Steele, Jane C / Grand, Roger J A

    Virology

    2011  Volume 421, Issue 2, Page(s) 149–158

    Abstract: Proteasomes represent the major non-lysosomal mechanism responsible for the degradation of proteins. Following interferon γ treatment 3 proteasome subunits are replaced producing immunoproteasomes. Adenovirus E1A interacts with components of the 20S and ... ...

    Abstract Proteasomes represent the major non-lysosomal mechanism responsible for the degradation of proteins. Following interferon γ treatment 3 proteasome subunits are replaced producing immunoproteasomes. Adenovirus E1A interacts with components of the 20S and 26S proteasome and can affect presentation of peptides. In light of these observations we investigated the relationship of AdE1A to the immunoproteasome. AdE1A interacts with the immunoproteasome subunit, MECL1. In contrast, AdE1A binds poorly to the proteasome β2 subunit which is replaced by MECL1 in the conversion of proteasomes to immunoproteasomes. Binding sites on E1A for MECL1 correspond to the N-terminal region and conserved region 3. Furthermore, AdE1A causes down-regulation of MECL1 expression, as well as LMP2 and LMP7, induced by interferon γ treatment during Ad infections or following transient transfection. Consistent with previous reports AdE1A reduced IFNγ-stimulated STAT1 phosphorylation which appeared to be responsible for its ability to reduce expression of immunoproteasome subunits.
    MeSH term(s) Adenoviridae/genetics ; Adenoviridae/metabolism ; Adenoviridae/pathogenicity ; Adenovirus E1A Proteins/chemistry ; Adenovirus E1A Proteins/genetics ; Adenovirus E1A Proteins/metabolism ; Binding Sites ; Cell Line, Tumor ; Cysteine Endopeptidases/biosynthesis ; Cysteine Endopeptidases/metabolism ; Down-Regulation ; Humans ; Interferon-gamma/pharmacology ; Phosphorylation ; Proteasome Endopeptidase Complex/biosynthesis ; Proteasome Endopeptidase Complex/chemistry ; Proteasome Endopeptidase Complex/genetics ; Proteasome Endopeptidase Complex/metabolism ; Protein Binding ; STAT1 Transcription Factor/metabolism ; Signal Transduction
    Chemical Substances Adenovirus E1A Proteins ; STAT1 Transcription Factor ; STAT1 protein, human ; LMP-2 protein (144416-78-4) ; Interferon-gamma (82115-62-6) ; Cysteine Endopeptidases (EC 3.4.22.-) ; LMP7 protein (EC 3.4.25.1) ; PSMB10 protein, human (EC 3.4.25.1) ; Proteasome Endopeptidase Complex (EC 3.4.25.1)
    Language English
    Publishing date 2011-10-21
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 200425-2
    ISSN 1096-0341 ; 0042-6822
    ISSN (online) 1096-0341
    ISSN 0042-6822
    DOI 10.1016/j.virol.2011.09.025
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article: The trans-acting protein interacting with the DNA motif proximal to the transcriptional start site of plant L-asparaginase is bacterial sarcosine oxidase.

    Jones, William T / Al-Samarrai, Taha / Reeves, Janice M / Ryan, Gordon B / Kirk, Christopher A / Vincze, Eva / Harvey, Dawn / McCambridge, Marie / Greenwood, David / Reynolds, Paul H S

    Journal of bacteriology

    2004  Volume 186, Issue 3, Page(s) 811–817

    Abstract: A trans-acting protein interacting with a specific sequence motif proximal to the transcriptional start site of the L-asparaginase promoter has been observed previously (E. Vincze, J. M. Reeves, E. Lamping, K. J. F. Farnden, and P. H. S. Reynolds, Plant ... ...

    Abstract A trans-acting protein interacting with a specific sequence motif proximal to the transcriptional start site of the L-asparaginase promoter has been observed previously (E. Vincze, J. M. Reeves, E. Lamping, K. J. F. Farnden, and P. H. S. Reynolds, Plant Mol. Biol. 26:303-311, 1994). Gel retardation experiments in which protein extracts of Mesorhizobium loti and developing nodules were used suggested a bacterial origin for the repressor binding protein (rep2037). Nodulation tests were performed by using different Fix(-) Tn5 mutants of M. loti. Analyses of these mutants revealed a correlation between the presence of Mesorhizobium in the nodule-like structures and the ability of nodule protein extracts to bind the repressor binding domain (RBD). Through the use of mutated RBD sequences, the RBD sequence was identified as CTAAAAT. The repressor protein was isolated from M. loti NZP2037 by multiple chromatographic procedures and affinity separation by using concatemers of RBD attached to magnetic beads. Sequencing of the recovered protein resulted in identification of the repressor protein as the sarcosine oxidase alpha subunit. This was confirmed by expression of the gene encoding the M. loti alpha subunit of sarcosine oxidase in Escherichia coli. When the expressed peptide was bound to RBD, the gel retardation result was identical to the result obtained with rep2037 from M. loti strain NZP2037.
    MeSH term(s) Amino Acid Sequence ; Asparaginase/genetics ; DNA/metabolism ; DNA-Binding Proteins/isolation & purification ; DNA-Binding Proteins/metabolism ; Molecular Sequence Data ; Oxidoreductases, N-Demethylating/chemistry ; Oxidoreductases, N-Demethylating/metabolism ; Promoter Regions, Genetic ; Protein Subunits ; Repressor Proteins/isolation & purification ; Repressor Proteins/metabolism ; Sarcosine Oxidase ; Transcription, Genetic
    Chemical Substances DNA-Binding Proteins ; Protein Subunits ; Repressor Proteins ; DNA (9007-49-2) ; Oxidoreductases, N-Demethylating (EC 1.5.-) ; Sarcosine Oxidase (EC 1.5.3.1) ; Asparaginase (EC 3.5.1.1)
    Language English
    Publishing date 2004-01-16
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2968-3
    ISSN 1098-5530 ; 0021-9193
    ISSN (online) 1098-5530
    ISSN 0021-9193
    DOI 10.1128/JB.186.3.811-817.2004
    Database MEDical Literature Analysis and Retrieval System OnLINE

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