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  1. Article: Landmark annotation through feature combinations: a comparative study on cephalometric images with in-depth analysis of model's explainability.

    S, Rashmi / S, Srinath / S Murthy, Prashanth / Deshmukh, Seema

    Dento maxillo facial radiology

    2024  Volume 53, Issue 2, Page(s) 115–126

    Abstract: Objectives: The objectives of this study are to explore and evaluate the automation of anatomical landmark localization in cephalometric images using machine learning techniques, with a focus on feature extraction and combinations, contextual analysis, ... ...

    Abstract Objectives: The objectives of this study are to explore and evaluate the automation of anatomical landmark localization in cephalometric images using machine learning techniques, with a focus on feature extraction and combinations, contextual analysis, and model interpretability through Shapley Additive exPlanations (SHAP) values.
    Methods: We conducted extensive experimentation on a private dataset of 300 lateral cephalograms to thoroughly study the annotation results obtained using pixel feature descriptors including raw pixel, gradient magnitude, gradient direction, and histogram-oriented gradient (HOG) values. The study includes evaluation and comparison of these feature descriptions calculated at different contexts namely local, pyramid, and global. The feature descriptor obtained using individual combinations is used to discern between landmark and nonlandmark pixels using classification method. Additionally, this study addresses the opacity of LGBM ensemble tree models across landmarks, introducing SHAP values to enhance interpretability.
    Results: The performance of feature combinations was assessed using metrics like mean radial error, standard deviation, success detection rate (SDR) (2 mm), and test time. Remarkably, among all the combinations explored, both the HOG and gradient direction operations demonstrated significant performance across all context combinations. At the contextual level, the global texture outperformed the others, although it came with the trade-off of increased test time. The HOG in the local context emerged as the top performer with an SDR of 75.84% compared to others.
    Conclusions: The presented analysis enhances the understanding of the significance of different features and their combinations in the realm of landmark annotation but also paves the way for further exploration of landmark-specific feature combination methods, facilitated by explainability.
    MeSH term(s) Humans ; Cephalometry/methods ; Anatomic Landmarks ; Machine Learning ; Data Curation
    Language English
    Publishing date 2024-01-02
    Publishing country England
    Document type Journal Article
    ZDB-ID 221323-0
    ISSN 1476-542X ; 0250-832X ; 0349-490X
    ISSN (online) 1476-542X
    ISSN 0250-832X ; 0349-490X
    DOI 10.1093/dmfr/twad011
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Evaluation of Ocular Perfusion Pressure in Migraine Patients

    S Rashmi / KS Divyalakshmi / K Soujanya / B Anupama / H Pavithra

    Journal of Clinical and Diagnostic Research, Vol 17, Iss 10, Pp 05-

    A Case-control Study

    2023  Volume 08

    Abstract: Introduction: Vascular dysregulation is a common underlying factor between migraine and glaucoma. Fluctuations in Ocular Perfusion Pressure (OPP) can lead to ischaemia and damage to the optic nerve head. It is unclear if the risk of glaucoma in migraine ... ...

    Abstract Introduction: Vascular dysregulation is a common underlying factor between migraine and glaucoma. Fluctuations in Ocular Perfusion Pressure (OPP) can lead to ischaemia and damage to the optic nerve head. It is unclear if the risk of glaucoma in migraine patients is due to low OPP. Aim: To compare the OPP of migraine patients with healthy controls and assess the role of OPP as a risk factor for glaucoma in migraine patients. Materials and Methods: This case-control study was conducted from June 2019 to May 2020 at Yenepoya Medical College Hospital, Mangaluru, Karnataka, India. Adult patients of either gender, aged between 18 and 40 years, diagnosed with migraine, were included in the study. Intraocular Pressure (IOP), blood pressure, and OPP were measured in 94 migraine patients and compared with 94 age-matched controls. Data were analysed using Statistical Package for the Social Sciences (SPSS) version 23.0. Independent t-tests were used for comparison. Adjusted odds ratios were calculated using binary logistic regression, and a p-value <0.05 was considered statistically significant. Results: The mean IOP was 13.27±2.02 mmHg among cases and 13.38±1.87 mmHg among controls. The mean Systolic Blood Pressure (SBP) was 118.91±4.67 mmHg among cases and 116.09±5.18 mmHg among controls. The mean Diastolic Blood Pressure (DBP) was 77.72±4.48 mmHg among cases and 75.77±4.89 mmHg among controls. The mean OPP was 47.69±2.43 mmHg among cases and 46.08±2.46 mmHg among controls. The t-test values showed a statistically significant difference in SBP, DBP, and OPP between the two groups (p-value<0.05). Conclusion: The OPP in migraine patients differed significantly from that of the controls. However, further studies are needed to evaluate the relationship between perfusion pressure abnormalities and the risk of glaucoma in migraine patients.
    Keywords blood pressure ; intraocular pressure ; ischaemia ; glaucoma ; Medicine ; R
    Subject code 610
    Language English
    Publishing date 2023-10-01T00:00:00Z
    Publisher JCDR Research and Publications Private Limited
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  3. Article ; Online: Shot based keyframe extraction using edge-LBP approach

    H.M. Nandini / H.K. Chethan / B.S. Rashmi

    Journal of King Saud University: Computer and Information Sciences, Vol 34, Iss 7, Pp 4537-

    2022  Volume 4545

    Abstract: Advancement in technology has led to tremendous increase in the online video content that requires efficient and effective content based video analysis approaches. In this regard, efficient approach for abrupt Shot Boundary Detection (SBD) and keyframe ... ...

    Abstract Advancement in technology has led to tremendous increase in the online video content that requires efficient and effective content based video analysis approaches. In this regard, efficient approach for abrupt Shot Boundary Detection (SBD) and keyframe extraction has been presented. The proposed method detects abrupt shots by extracting binarized edge information from frames for texture characterisation using Local Binary Pattern (LBP) method. Further, Euclidean distance has been applied on the histogram features constructed and an adaptive threshold is used to detect abrupt shots. During keyframe extraction phase, magnitude gradient using Sobel operator has been extracted from each frame of the segmented shot. Subsequently, magnitude values are transformed into Z-score which describes the position of each pixel in terms of its distance from the mean, when measured in standard deviation units of every frame. Finally, Co-efficient of variation is computed for each frame and the frame possessing the highest value is selected as a keyframe from every shot. Experiments were conducted on TRECVID 2001 dataset to analyze and validate the proposed approach. Experimental result manifest that the proposed SBD and keyframe extraction method outperforms some of the state-of-the-art algorithms with average F1-score of 98.15% and average fidelity measure of 90% respectively.
    Keywords Sobel operator ; Shot boundary detection ; Gradient function ; Keyframe extraction ; Z-score ; Electronic computers. Computer science ; QA75.5-76.95
    Subject code 006
    Language English
    Publishing date 2022-07-01T00:00:00Z
    Publisher Elsevier
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  4. Article ; Online: Learning Humanities through Art in Medical Education - A Potential Exercise to Improve Observational Skills

    K S Rashmi / R Raghunandana / M Shilpa / K Narayana

    Journal of Medical Sciences and Health, Vol 7, Iss 3, Pp 1-

    2021  Volume 5

    Keywords Medicine ; R
    Language English
    Publishing date 2021-12-01T00:00:00Z
    Publisher ADICHUNCHANAGIRI INSTITUTE OF MEDICAL SCIENCES
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  5. Article ; Online: Visual rehabilitation with secondary intraocular lens implantation in a case of hallermann–streiff syndrome

    S Rashmi / Praveen S Alavandi

    Archives of Medicine and Health Sciences, Vol 5, Iss 2, Pp 242-

    2017  Volume 244

    Abstract: Hallermann–Streiff syndrome (HSS) is a rare congenital disorder with multiple abnormalities mainly affecting face, skull, hair, eyes, and teeth. We report a case of an 18-year-old Indian girl with HSS having typical physical features and ophthalmological ...

    Abstract Hallermann–Streiff syndrome (HSS) is a rare congenital disorder with multiple abnormalities mainly affecting face, skull, hair, eyes, and teeth. We report a case of an 18-year-old Indian girl with HSS having typical physical features and ophthalmological manifestations. She had been operated for bilateral congenital cataract in her infancy, and since then, she had been aphakic in both eyes. She had poor vision in the right eye and irreversible blindness in the left eye. She underwent scleral-fixated (glued) intraocular lens implantation in the right eye with good visual recovery.
    Keywords Glued intraocular lens ; Hallermann–Streiff syndrome ; scleral-fixated intraocular lens ; Medicine ; R
    Language English
    Publishing date 2017-01-01T00:00:00Z
    Publisher Wolters Kluwer Medknow Publications
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  6. Article ; Online: Zebrafish as an experimental model for the simulation of neurological and craniofacial disorders

    Ashwin Rohan Rai / Teresa Joy / K. S. Rashmi / Rajalakshmi Rai / N. A. Vinodini / P. J. Jiji

    Veterinary World, Vol 15, Iss 1, Pp 22-

    2022  Volume 29

    Abstract: Zebrafish have gained momentum as a leading experimental model in recent years. At present, the zebrafish vertebrate model is increasingly used due to its multifactorial similarities to humans that include genetic, organ, and cellular factors. With the ... ...

    Abstract Zebrafish have gained momentum as a leading experimental model in recent years. At present, the zebrafish vertebrate model is increasingly used due to its multifactorial similarities to humans that include genetic, organ, and cellular factors. With the emergence of novel research techniques that are very expensive, it is necessary to develop affordable and valid experimental models. This review aimed to highlight some of the most important similarities between zebrafish and humans by emphasizing the relevance of the first in simulating neurological disorders and craniofacial deformity.
    Keywords craniofacial deformity ; experimental model ; neurological disorders ; zebrafish ; Animal culture ; SF1-1100 ; Veterinary medicine ; SF600-1100
    Language English
    Publishing date 2022-01-01T00:00:00Z
    Publisher Veterinary World
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  7. Article ; Online: Mutations in SARS-CoV-2 Leading to Antigenic Variations in Spike Protein

    Praveen Kumar Singh / Umay Kulsum / Syed Beenish Rufai / S. Rashmi Mudliar / Sarman Singh

    Journal of Laboratory Physicians, Vol 12, Iss 02, Pp 154-

    A Challenge in Vaccine Development

    2020  Volume 160

    Abstract: Objectives The spread of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) virus has been unprecedentedly fast, spreading to more than 180 countries within 3 months with variable severity. One of the major reasons attributed to this variation ... ...

    Abstract Objectives The spread of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) virus has been unprecedentedly fast, spreading to more than 180 countries within 3 months with variable severity. One of the major reasons attributed to this variation is genetic mutation. Therefore, we aimed to predict the mutations in the spike protein (S) of the SARS-CoV-2 genomes available worldwide and analyze its impact on the antigenicity. Materials and Methods Several research groups have generated whole genome sequencing data which are available in the public repositories. A total of 1,604 spike proteins were extracted from 1,325 complete genome and 279 partial spike coding sequences of SARS-CoV-2 available in NCBI till May 1, 2020 and subjected to multiple sequence alignment to find the mutations corresponding to the reported single nucleotide polymorphisms (SNPs) in the genomic study. Further, the antigenicity of the predicted mutations inferred, and the epitopes were superimposed on the structure of the spike protein. Results The sequence analysis resulted in high SNPs frequency. The significant variations in the predicted epitopes showing high antigenicity were A348V, V367F and A419S in receptor binding domain (RBD). Other mutations observed within RBD exhibiting low antigenicity were T323I, A344S, R408I, G476S, V483A, H519Q, A520S, A522S and K529E. The RBD T323I, A344S, V367F, A419S, A522S and K529E are novel mutations reported first time in this study. Moreover, A930V and D936Y mutations were observed in the heptad repeat domain and one mutation D1168H was noted in heptad repeat domain 2. Conclusion S protein is the major target for vaccine development, but several mutations were predicted in the antigenic epitopes of S protein across all genomes available globally. The emergence of various mutations within a short period might result in the conformational changes of the protein structure, which suggests that developing a universal vaccine may be a challenging task.
    Keywords sars-cov-2 ; spike protein ; mutations ; epitopes ; antigenicity ; Medicine ; R ; covid19
    Subject code 572
    Language English
    Publishing date 2020-08-01T00:00:00Z
    Publisher Thieme Medical and Scientific Publishers Pvt. Ltd.
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  8. Article ; Online: Quantification of excess Carbon-14 specific activity in terrestrial biota in the off-site locations of the PHWR nuclear power plant at Kaiga, India.

    Karunakara, N / D'Souza, Renita Shiny / Nayak, S Rashmi / Bharath, S / Krishnan, K Arya / Dileep, B N / Ravi, P M

    The Science of the total environment

    2022  Volume 858, Issue Pt 1, Page(s) 159756

    Abstract: This is the first detailed study ... ...

    Abstract This is the first detailed study on
    MeSH term(s) Nuclear Power Plants ; Carbon Radioisotopes ; Biota ; India ; Gases
    Chemical Substances Carbon-14 (7V68J5677O) ; Carbon Radioisotopes ; Gases
    Language English
    Publishing date 2022-10-27
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 121506-1
    ISSN 1879-1026 ; 0048-9697
    ISSN (online) 1879-1026
    ISSN 0048-9697
    DOI 10.1016/j.scitotenv.2022.159756
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  9. Article ; Online: Study of demographic features in retropositive pregnant women

    Saravana A. / Shashikala B. Patil / K. S. Rashmi

    International Journal of Reproduction, Contraception, Obstetrics and Gynecology, Vol 5, Iss 10, Pp 3529-

    2016  Volume 3531

    Abstract: Background: Study of demographic features like age, educational status of the patient and her husband, occupation of the patient and her husband and religion of the retropositive pregnant women compared to controls. Methods: In this prospective study ... ...

    Abstract Background: Study of demographic features like age, educational status of the patient and her husband, occupation of the patient and her husband and religion of the retropositive pregnant women compared to controls. Methods: In this prospective study patients were selected from Vani Vilas Hospital attached to Bangalore Medical College attending the antenatal Clinic of Obstetrics and Gynaecology. The study period was for 2 years. The study group comprised of 100 HIV seropositive patients. The control group comprised of 100 HIV seronegative patients. At enrollment, data collection of demographic features like age, educational status of the patient and her husband, occupation of patient and her husband, and religion of the retropositive pregnant women compared to controls. Results: The minimum and maximum age in the study group was 18 and 36 years respectively and in the control group 17 and 35 years respectively. Around 73% of pregnant women in the study group were below 25 years of age. 89% of pregnant women in the study group were Hindus. Around 36% of women in the study group were illiterate compared to 21% in the control group. Around 45% of women in the control group have studied till secondary school. In this study, most of the women in both the groups were housewives. There was one commercial sex worker and 8 women had polygamous relationship in the study group. The occupational pattern of the husbands was analyzed and 34% of the husbands of HIV positive women were drivers. 56% of the husbands in the study group admitted to have had multiple sexual partners, whereas only 9% admitted so, in the control group. Conclusions: Retropositive pregnant women were younger; most of them were house wives. Husbands of retropositive pregnant women were drivers and most of them had multiple sexual partners. [Int J Reprod Contracept Obstet Gynecol 2016; 5(10.000): 3529-3531]
    Keywords Demographic features ; Retropositive ; Pregnant women ; Gynecology and obstetrics ; RG1-991 ; Medicine ; R
    Subject code 360
    Language English
    Publishing date 2016-10-01T00:00:00Z
    Publisher Medip Academy
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  10. Article: Mutations in SARS-CoV-2 Leading to Antigenic Variations in Spike Protein: A Challenge in Vaccine Development.

    Singh, Praveen Kumar / Kulsum, Umay / Rufai, Syed Beenish / Mudliar, S Rashmi / Singh, Sarman

    Journal of laboratory physicians

    2020  Volume 12, Issue 2, Page(s) 154–160

    Abstract: ... ...

    Abstract Objectives
    Keywords covid19
    Language English
    Publishing date 2020-09-01
    Publishing country Germany
    Document type Journal Article
    ZDB-ID 2461120-7
    ISSN 0974-7826 ; 0974-2727
    ISSN (online) 0974-7826
    ISSN 0974-2727
    DOI 10.1055/s-0040-1715790
    Database MEDical Literature Analysis and Retrieval System OnLINE

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